arXiv subjects

Luigi Genovese

Publications and source records attributed to Luigi Genovese.

At least 37 records · Page 2Linked to original sources

arXiv2018

Comment on the stability of decorated C 48 B 12 heterofullerene

A good hydrogen storage material should adsorb hydrogen in high concentrations and with optimal binding energies. Numerous mixed carbon boron fullerenes which are decorated with metal atoms were previously constructed by hand and proposed as a promising material in this context. We present a fully ab-initio, unbiased structure search in the configurational space of decorated C48B12 and find that most of the hitherto postulated ground state structures are not ground states. We determine the energetically lowest configurations for Be, Ca, Li and Sc decorated C48B12 clusters.

cond-mat.mtrl-sci↗

arXiv2017

Accurate, Large-Scale and Affordable Hybrid-PBE0 Calculations with GPU-Accelerated Supercomputers

Performing high accuracy hybrid functional calculations for condensed matter systems containing a large number of atoms is at present computationally very demanding - when not out of reach - if high quality basis sets are used. We present a highly efficient multiple GPU implementation of the exact exchange operator which allows hybrid functional density-functional theory calculations with systematic basis sets without additional approximations for up to a thousand atoms. This method is implemented in a portable real-space-based algorithm, released as an open-source package. With such a framework hybrid DFT calculations of high quality become accessible on state-of-the-art supercomputers within a time-to-solution of the same order of magnitude as traditional semilocal-GGA functionals.

cond-mat.mtrl-sci↗

arXiv2017

Linear scaling DFT calculations for large Tungsten systems using an optimized local basis

Density Functional Theory (DFT) has become the quasi-standard for ab-initio simulations for a wide range of applications. While the intrinsic cubic scaling of DFT was for a long time limiting the accessible system size to some hundred atoms, the recent progress with respect to linear scaling DFT methods has allowed to tackle problems that are larger by many orders of magnitudes. However, as these linear scaling methods were developed for insulators, they cannot, in general, be straightforwardly applied to metals, as a finite temperature is needed to ensure locality of the density matrix. In this paper we show that, once finite electronic temperature is employed, the linear scaling version of the BigDFT code is able to exploit this locality to provide a computational treatment that scales linearly with respect to the number of atoms of a metallic system. We provide prototype examples based on bulk Tungsten, which plays a key role in finding safe and long-lasting materials for Fusion Reactors. We believe that such an approach might help in opening the path towards novel approaches for investigating the electronic structure of such materials, in particular when large supercells are required.

cond-mat.mtrl-sci↗

arXiv2017

Efficient Computation of Sparse Matrix Functions for Large-Scale Electronic Structure Calculations: The CheSS Library

We present CheSS, the "Chebyshev Sparse Solvers" library, which has been designed to solve typical problems arising in large-scale electronic structure calculations using localized basis sets. The library is based on a flexible and efficient expansion in terms of Chebyshev polynomials and presently features the calculation of the density matrix, the calculation of matrix powers for arbitrary powers, and the extraction of eigenvalues in a selected interval. CheSS is able to exploit the sparsity of the matrices and scales linearly with respect to the number of nonzero entries, making it well-suited for large-scale calculations. The approach is particularly adapted for setups leading to small spectral widths of the involved matrices and outperforms alternative methods in this regime. By coupling CheSS to the DFT code BigDFT, we show that such a favorable setup is indeed possible in practice. In addition, the approach based on Chebyshev polynomials can be massively parallelized, and CheSS exhibits excellent scaling up to thousands of cores even for relatively small matrix sizes.

physics.chem-ph↗

arXiv2017

Complexity Reduction in Large Quantum Systems: Reliable Electrostatic Embedding for Multiscale Approaches via Optimized Minimal Basis Functions

Given a partition of a large system into an active quantum mechanical (QM) region and its environment, we present a simple way of embedding the QM region into an effective electrostatic potential representing the environment. This potential is generated by partitioning the environment into well defined fragments, and assigning each one a set of electrostatic multipoles, which can then be used to build up the electrostatic potential. We show that, providing the fragments and the projection scheme for the multipoles are chosen properly, this leads to an effective electrostatic embedding of the active QM region which is of equal quality as a full QM calculation. We coupled our formalism to the DFT code BigDFT, which uses a minimal set of localized in-situ optimized basis functions; this property eases the fragment definition while still describing the electronic structure with great precision. Thanks to the linear scaling capabilities of BigDFT, we can compare the modeling of the electrostatic embedding with results coming from unbiased full QM calculations of the entire system. This enables a reliable and controllable setup of an effective coarse-graining approach, coupling together different levels of description, which yields a considerable reduction in the degrees of freedom and thus paves the way towards efficient QM/QM and QM/MM methods for the treatment of very large systems.

physics.chem-ph↗

arXiv2017

Complexity Reduction in Large Quantum Systems: Fragment Identification and Population Analysis via a Local Optimized Minimal Basis

We present, within Kohn-Sham Density Functional Theory calculations, a quantitative method to identify and assess the partitioning of a large quantum mechanical system into fragments. We then show how within this framework simple generalizations of other well-known population analyses can be used to extract, from first principles, reliable electrostatic multipoles for the identified fragments. Our approach reduces arbitrariness in the fragmentation procedure, and enables the possibility to assess, quantitatively, whether the corresponding fragment multipoles can be interpreted as observable quantities associated to a system's moiety. By applying our formalism within the code BigDFT, we show that the use of a minimal set of in-situ optimized basis functions allows at the same time a proper fragment definition and an accurate description of the electronic structure.

physics.chem-ph↗

arXiv2016

Revisiting the domain model for lithium intercalated graphite

In this letter, we study the stability of the domain model for lithium intercalated graphite in stages III and II by means of Density Functional Theory and Kinetic Lattice Monte Carlo simulations. We find that the domain model is either thermodynamically or kinetically stable when compared to the standard model in stages III and II. The existence of domains in the intercalation sequence is well supported by recent high resolution transmission electron microscope observations in lithiated graphite. Moreover, we predict that such domain staging sequences leads to a wide range of diffusivity as reported in experiments.

cond-mat.mtrl-sci↗

arXiv2016

Challenges in Large Scale Quantum Mechanical Calculations

During the past decades, quantum mechanical methods have undergone an amazing transition from pioneering investigations of experts into a wide range of practical applications, made by a vast community of researchers. First principles calculations of systems containing up to a few hundred atoms have become a standard in many branches of science. The sizes of the systems which can be simulated have increased even further during recent years, and quantum-mechanical calculations of systems up to many thousands of atoms are nowadays possible. This opens up new appealing possibilities, in particular for interdisciplinary work, bridging together communities of different needs and sensibilities. In this review we will present the current status of this topic, and will also give an outlook on the vast multitude of applications, challenges and opportunities stimulated by electronic structure calculations, making this field an important working tool and bringing together researchers of many different domains.

physics.chem-ph↗

arXiv2016

A wavelet-based Projector Augmented-Wave (PAW) method: reaching frozen-core all-electron precision with a systematic, adaptive and localized wavelet basis set

We present a Projector Augmented-Wave~(PAW) method based on a wavelet basis set. We implemented our wavelet-PAW method as a PAW library in the ABINIT package [http://www.abinit.org] and into BigDFT [http://www.bigdft.org]. We test our implementation in prototypical systems to illustrate the potential usage of our code. By using the wavelet-PAW method, we can simulate charged and special boundary condition systems with frozen-core all-electron precision. Furthermore, our work paves the way to large-scale and potentially order-N simulations within a PAW method.

cond-mat.mtrl-sci↗

arXiv2015

Multipole-Preserving Quadratures for Discretization of Functions in Real-Space Electronic Structure Calculations

Discretizing an analytic function on a uniform real-space grid is often done via a straightforward collocation method. This is ubiquitous in all areas of computational physics and quantum chemistry. An example in Density Functional Theory (DFT) is given by the external potential or the pseudo-potential describing the interaction between ions and electrons. The accuracy of the collocation method used is therefore very important for the reliability of subsequent treatments like self-consistent field solutions of the electronic structure problems. By construction, the collocation method introduces numerical artifacts typical of real-space treatments, like the so-called egg-box error, that may spoil the numerical stability of the description when the real-space grid is too coarse. As the external potential is an input of the problem, even a highly precise computational treatment cannot cope this inconvenience. We present in this paper a new quadrature scheme that is able to exactly preserve the moments of a given analytic function even for large grid spacings, while reconciling with the traditional collocation method when the grid spacing is small enough. In the context of real-space electronic structure calculations, we show that this method improves considerably the stability of the results for large grid spacings, opening the path towards reliable low-accuracy DFT calculations with reduced number of degrees of freedom.

physics.comp-ph↗

arXiv2015

Phonon-limited carrier mobility and resistivity from carbon nanotubes to graphene

Under which conditions do the electrical transport properties of one-dimensional (1D) carbon nanotubes (CNTs) and 2D graphene become equivalent? We have performed atomistic calculations of the phonon-limited electrical mobility in graphene and in a wide range of CNTs of different types to address this issue. The theoretical study is based on a tight-binding method and a force-constant model from which all possible electron-phonon couplings are computed. The electrical resistivity of graphene is found in very good agreement with experiments performed at high carrier density. A common methodology is applied to study the transition from 1D to 2D by considering CNTs with diameter up to 16 nm. It is found that the mobility in CNTs of increasing diameter converges to the same value, the mobility in graphene. This convergence is much faster at high temperature and high carrier density. For small-diameter CNTs, the mobility strongly depends on chirality, diameter, and existence of a bandgap.

cond-mat.mes-hall↗

arXiv2015

Identification of Resonant States via the Generalized Virial Theorem

The numerical extraction of resonant states of open quantum systems is usually a difficult problem. Regularization techniques, such as the mapping to complex coordinates or the addition of Complex Absorbing Potentials are typically employed, as they render resonant wavefunctions localized and therefore normalizable. Physically relevant metastable states have energies that do not depend on the chosen regularization method. Their identification therefore involves cumbersome comparisons between multiple regularised calculations, often performed graphically, which require fine-tuning and specific intuition to avoid approximated, if not wrong, results. In this Letter, we define an operator that explicitly measures such invariance, valid for any arbitrary mapping of spatial coordinates. Resonant states of the system can eventually simply be identified evaluating the expectation value of this operator. Our method eases the extraction of resonant states even for numerical potentials that are difficult to scale to complex coordinates, and avoids the need for ad hoc complex absorbing potentials. We provide explicit evidence of our findings discussing one-dimensional case-studies,also in the presence of external electric fields.

cond-mat.mtrl-sci↗

arXiv2015

Fragment Approach to Constrained Density Functional Theory Calculations using Daubechies Wavelets

In a recent paper we presented a linear scaling Kohn-Sham density functional theory (DFT) code based on Daubechies wavelets, where a minimal set of localized support functions is optimized in situ and therefore adapted to the chemical properties of the molecular system. Thanks to the systematically controllable accuracy of the underlying basis set, this approach is able to provide an optimal contracted basis for a given system: accuracies for ground state energies and atomic forces are of the same quality as an uncontracted, cubic scaling approach. This basis set offers, by construction, a natural subset where the density matrix of the system can be projected. In this paper we demonstrate the flexibility of this minimal basis formalism in providing a basis set that can be reused as-is, i.e. without reoptimization, for charge-constrained DFT calculations within a fragment approach. Support functions, represented in the underlying wavelet grid, of the template fragments are roto-translated with high numerical precision to the required positions and used as projectors for the charge weight function. We demonstrate the interest of this approach to express highly precise and efficient calculations for preparing diabatic states and for the computational setup of systems in complex environments.

cond-mat.mtrl-sci↗

arXiv2015

Accurate and efficient linear scaling DFT calculations with universal applicability

Density Functional Theory calculations traditionally suffer from an inherent cubic scaling with respect to the size of the system, making big calculations extremely expensive. This cubic scaling can be avoided by the use of so-called linear scaling algorithms, which have been developed during the last few decades. In this way it becomes possible to perform ab-initio calculations for several tens of thousands of atoms or even more within a reasonable time frame. However, even though the use of linear scaling algorithms is physically well justified, their implementation often introduces some small errors. Consequently most implementations offering such a linear complexity either yield only a limited accuracy or, if one wants to go beyond this restriction, require a tedious fine tuning of many parameters. In our linear scaling approach within the BigDFT package, we were able to overcome this restriction. Using an ansatz based on localized support functions expressed in an underlying Daubechies wavelet basis -- which offers ideal properties for accurate linear scaling calculations -- we obtain an amazingly high accuracy and a universal applicability while still keeping the possibility of simulating large systems with only a moderate demand of computing resources.

cond-mat.mtrl-sci↗

arXiv2014

Daubechies Wavelets for Linear Scaling Density Functional Theory

We demonstrate that Daubechies wavelets can be used to construct a minimal set of optimized localized contracted basis functions in which the Kohn-Sham orbitals can be represented with an arbitrarily high, controllable precision. Ground state energies and the forces acting on the ions can be calculated in this basis with the same accuracy as if they were calculated directly in a Daubechies wavelets basis, provided that the amplitude of these contracted basis functions is sufficiently small on the surface of the localization region, which is guaranteed by the optimization procedure described in this work. This approach reduces the computational costs of DFT calculations, and can be combined with sparse matrix algebra to obtain linear scaling with respect to the number of electrons in the system. Calculations on systems of 10,000 atoms or more thus become feasible in a systematic basis set with moderate computational resources. Further computational savings can be achieved by exploiting the similarity of the contracted basis functions for closely related environments, e.g. in geometry optimizations or combined calculations of neutral and charged systems.

cond-mat.mtrl-sci↗

arXiv2013

Accurate Complex Scaling of Three Dimensional Numerical Potentials

The complex scaling method, which consists in continuing spatial coordinates into the complex plane, is a well-established method that allows to compute resonant eigenfunctions of the time-independent Schroedinger operator. Whenever it is desirable to apply the complex scaling to investigate resonances in physical systems defined on numerical discrete grids, the most direct approach relies on the application of a similarity transformation to the original, unscaled Hamiltonian. We show that such an approach can be conveniently implemented in the Daubechies wavelet basis set, featuring a very promising level of generality, high accuracy, and no need for artificial convergence parameters. Complex scaling of three dimensional numerical potentials can be efficiently and accurately performed. By carrying out an illustrative resonant state computation in the case of a one-dimensional model potential, we then show that our wavelet-based approach may disclose new exciting opportunities in the field of computational non-Hermitian quantum mechanics.

cond-mat.mtrl-sci↗

arXiv2013

Boron aggregation in the ground states of boron-carbon fullerenes

We present novel structural motifs for boron-carbon nano-cages of the stochiometries B12C48 and B12C50, based on first principle calculations. These configurations are distinct from those proposed so far by the fact that the boron atoms are not isolated and distributed over the entire surface of the cages, but rather aggregate at one location to form a patch. Our putative ground state of B12C48 is 1.8 eV lower in energy than the previously proposed ground state and violates all the suggested empirical rules for constructing low energy fullerenes. The B12C50 configuration is energetically even more favorable than B12C48, showing that structures derived from the C60 Buckminsterfullerene are not necessarily magic sizes for heterofullerenes.

cond-mat.mtrl-sci↗

arXiv2013

Norm-conserving pseudopotentials with chemical accuracy compared to all-electron calculations

By adding a non-linear core correction to the well established Dual Space Gaussian type pseudopotentials for the chemical elements up to the third period, we construct improved pseudopotentials for the Perdew Burke Ernzerhof (PBE) functional and demonstrate that they exhibit excellent accuracy. Our benchmarks for the G2-1 test set show average atomization energy errors of only half a kcal/mol. The pseudopotentials also remain highly reliable for high pressure phases of crystalline solids. When supplemented by empirical dispersion corrections the average error in the interaction energy between molecules is also about half a kcal/mol. The accuracy that can be obtained by these pseudopotentials in combination with a systematic basis set is well superior to the accuracy that can be obtained by commonly used medium size Gaussian basis sets in all-electron calculations.

physics.chem-ph↗