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Luis Barboza

Publications and source records attributed to Luis Barboza.

3 recordsLinked to original sources

Parameter estimates of the 2016-2017 Zika outbreak in Costa Rica: An Approximate Bayesian Computation (ABC) Approach

In Costa Rica, the first known cases of Zika were reported in 2016. We looked at the 2016-2017 Zika outbreak and explored the transmission dynamics using weekly reported data. A nonlinear differential equation single-outbreak model with sexual transmission, as well as host availability for vector-feeding was used to estimate key parameters, fit the data and compute the {\it basic reproductive number}, $\mathcal{R}_0$, distribution. Furthermore, a sensitivity and elasticity analysis was computed based on the $\mathcal{R}_0$ parameters.

q-bio.PE

Infection model for analyzing biological control of coffee rust using bacterial anti-fungal compounds

Coffee rust is one of the main diseases that affect coffee plantations worldwide. This causes an important economic impact in the coffee production industry in countries where coffee is an important part of the economy. A common method for combating this disease is using copper hydroxide as a fungicide, which can have damaging effects both on the coffee tree and on human health. A novel method for biological control of coffee rust using bacteria has been proven to be an effective alternative to copper hydroxide fungicides as anti-fungal compounds. In this paper, we develop and explore a spatial stochastic model for this interaction in a coffee plantation. We analyze equilibria for specific control strategies, as well as compute the basic reproductive number, R0, of individual coffee trees, conditions for local and global stability under specific conditions, parameter estimation of key parameters, as well as sensitivity analysis, and numerical experiments under local and global control strategies for key scenarios.

q-bio.PE

Reconstructing past temperatures from natural proxies and estimated climate forcings using short- and long-memory models

We produce new reconstructions of Northern Hemisphere annually averaged temperature anomalies back to 1000 AD, and explore the effects of including external climate forcings within the reconstruction and of accounting for short-memory and long-memory features. Our reconstructions are based on two linear models, with the first linking the latent temperature series to three main external forcings (solar irradiance, greenhouse gas concentration and volcanism), and the second linking the observed temperature proxy data (tree rings, sediment record, ice cores, etc.) to the unobserved temperature series. Uncertainty is captured with additive noise, and a rigorous statistical investigation of the correlation structure in the regression errors is conducted through systematic comparisons between reconstructions that assume no memory, short-memory autoregressive models, and long-memory fractional Gaussian noise models. We use Bayesian estimation to fit the model parameters and to perform separate reconstructions of land-only and combined land-and-marine temperature anomalies. For model formulations that include forcings, both exploratory and Bayesian data analysis provide evidence against models with no memory. Model assessments indicate that models with no memory underestimate uncertainty. However, no single line of evidence is sufficient to favor short-memory models over long-memory ones, or to favor the opposite choice. When forcings are not included, the long-memory models appear to be necessary. While including external climate forcings substantially improves the reconstruction, accurate reconstructions that exclude these forcings are vital for testing the fidelity of climate models used for future projections.

stat.AP