arXiv subjects

M. Y. Choi

Publications and source records attributed to M. Y. Choi.

At least 37 records · Page 2Linked to original sources

arXiv2007

Construction of equilibrium networks with an energy function

We construct equilibrium networks by introducing an energy function depending on the degree of each node as well as the product of neighboring degrees. With this topological energy function, networks constitute a canonical ensemble, which follows the Boltzmann distribution for given temperature. It is observed that the system undergoes a topological phase transition from a random network to a star or a fully-connected network as the temperature is lowered. Both mean-field analysis and numerical simulations reveal strong first-order phase transitions at temperatures which decrease logarithmically with the system size. Quantitative discrepancies of the simulation results from the mean-field prediction are discussed in view of the strong first-order nature.

cond-mat.stat-mech↗

arXiv2006

Quantum Dissipative Dynamics of Entanglement in the Spin-Boson Model

We study quantum dissipative dynamics of entanglement in the spin-boson model, described by the generalized master equation. We consider the two opposite limits of pure-dephasing and relaxation models, measuring the degree of entanglement with the concurrence. When the Markovian approximation is employed, entanglement is shown to decay exponentially in both cases. On the other hand, non-Markovian contributions alter the analytic structure of the master equation, resulting in logarithmic decay in the pure dephasing model.

cond-mat.mes-hall↗

arXiv2006

Kondo Effects in Carbon Nanotubes: From SU(4) to SU(2) symmetry

We study the Kondo effect in a single-electron transistor device realized in a single-wall carbon nanotube. The K-K' double orbital degeneracy of a nanotube, which originates from the peculiar two-dimensional band structure of graphene, plays the role of a pseudo-spin. Screening of this pseudo-spin, together with the real spin, can result in an SU(4) Kondo effect at low temperatures. For such an exotic Kondo effect to arise, it is crucial that this orbital quantum number is conserved during tunneling. Experimentally, this conservation is not obvious and some mixing in the orbital channel may occur. Here we investigate in detail the role of mixing and asymmetry in the tunneling coupling and analyze how different Kondo effects, from the SU(4) symmetry to a two-level SU(2) symmetry, emerge depending on the mixing and/or asymmetry. We use four different theoretical approaches to address both the linear and non-linear conductance for different values of the external magnetic field. Our results point out clearly the experimental conditions to observe exclusively SU(4) Kondo physics. Although we focus on nanotube quantum dots, our results also apply to vertical quantum dots. We also mention that a finite amount of orbital mixing corresponds, in the pseudospin language, to having non-collinear leads with respect to the orbital ''magnetization'' axis which defines the two pseudospin orientations in the nanotube quantum dot. In this sense, some of our results are also relevant to the problem of a Kondo quantum dot coupled to non-collinear ferromagnetic leads.

cond-mat.mes-hall↗

arXiv2006

Dynamic critical behaviors in two-dimensional Josephson junction arrays with positional disorder

We numerically investigate dynamic critical behaviors of two-dimensional (2D) Josephson-junction arrays with positional disorder in the scheme of the resistively shunted junction dynamics. Large-scale computation of the current voltage characteristics reveals an evidence supporting that a phase transition occurs at a nonzero critical temperature in the strong disorder regime, as well as in the weak disorder regime. The phase transition at weak disorder appears to belong to the Berezinskii-Kosterlitz-Thouless (BKT) type. In contrast, evidence for a non-BKT transition is found in the strong disorder regime. These results are consistent with the recent experiment %by Yun {\it et al.} in cond-mat/0509151 on positionally disordered Josephson-junction arrays; in particular, the critical temperature of the non-BKT transition (ranging from 0.265 down to the minimum 0.22 in units of $E_J/k_B$ with the Josephson coupling strength $E_J$), the correlation length critical exponent $ν=1.2$, and the dynamic critical exponent $z=2.0$ in the strong disorder regime agree with the existing studies of the 2D gauge-glass model.

cond-mat.supr-con↗

arXiv2005

Defect Motion and Lattice Pinning Barrier in Josephson-Junction Ladders

We study motion of domain wall defects in a fully frustrated Josephson-unction ladder system, driven by small applied currents. For small system sizes, the energy barrier E_B to the defect motion is computed analytically via symmetry and topological considerations. More generally, we perform numerical simulations directly on the equations of motion, based on the resistively-shunted junction model, to study the dynamics of defects, varying the system size. Coherent motion of domain walls is observed for large system sizes. In the thermodynamical limit, we find E_B=0.1827 in units of the Josephson coupling energy.

cond-mat.stat-mech↗

arXiv2005

Glucose metabolism and oscillatory behavior of pancreatic islets

A variety of oscillations are observed in pancreatic islets.We establish a model, incorporating two oscillatory systems of different time scales: One is the well-known bursting model in pancreatic beta-cells and the other is the glucose-insulin feedback model which considers direct and indirect feedback of secreted insulin. These two are coupled to interact with each other in the combined model, and two basic assumptions are made on the basis of biological observations: The conductance g_{K(ATP)} for the ATP-dependent potassium current is a decreasing function of the glucose concentration whereas the insulin secretion rate is given by a function of the intracellular calcium concentration. Obtained via extensive numerical simulations are complex oscillations including clusters of bursts, slow and fast calcium oscillations, and so on. We also consider how the intracellular glucose concentration depends upon the extracellular glucose concentration, and examine the inhibitory effects of insulin.

q-bio.CB↗

arXiv2005

How Noise and Coupling Induce Bursting Action Potentials in Pancreatic beta-cells

Unlike isolated beta-cells, which usually produce continuous spikes or fast and irregular bursts, electrically coupled beta-cells are apt to exhibit robust bursting action potentials. We consider the noise induced by thermal fluctuations as well as that by channel gating stochasticity and examine its effects on the action potential behavior of the beta-cell model. It is observed numerically that such noise in general helps single cells to produce a variety of electrical activities. In addition, we also probe coupling via gap junctions between neighboring cells,with heterogeneity induced by noise, to find that it enhances regular bursts.

q-bio.CB↗

arXiv2005

Dynamic model for failures in biological systems

A dynamic model for failures in biological organisms is proposed and studied both analytically and numerically. Each cell in the organism becomes dead under sufficiently strong stress, and is then allowed to be healed with some probability. It is found that unlike the case of no healing, the organism in general does not completely break down even in the presence of noise. Revealed is the characteristic time evolution that the system tends to resist the stress longer than the system without healing, followed by sudden breakdown with some fraction of cells surviving. When the noise is weak, the critical stress beyond which the system breaks down increases rapidly as the healing parameter is raised from zero, indicative of the importance of healing in biological systems.

q-bio.CB↗

arXiv2005

Network Marketing on a Small-World Network

We investigate a dynamic model of network marketing in a small-world network structure artificially constructed similarly to the Watts-Strogatz network model. Different from the traditional marketing, consumers can also play the role of the manufacturer's selling agents in network marketing, which is stimulated by the referral fee the manufacturer offers. As the wiring probability $α$ is increased from zero to unity, the network changes from the one-dimensional regular directed network to the star network where all but one player are connected to one consumer. The price $p$ of the product and the referral fee $r$ are used as free parameters to maximize the profit of the manufacturer. It is observed that at $α=0$ the maximized profit is constant independent of the network size $N$ while at $α\neq 0$, it increases linearly with $N$. This is in parallel to the small-world transition. It is also revealed that while the optimal value of $p$ stays at an almost constant level in a broad range of $α$, that of $r$ is sensitive to a change in the network structure. The consumer surplus is also studied and discussed.

physics.soc-ph↗

arXiv2005

Stability of thermodynamic and dynamical order in a system of globally coupled rotors

A system of globally coupled rotors is studied in a unified framework of microcanonical and canonical ensembles. We consider the Fokker-Planck equation governing the time evolution of the system, and examine various stationary as well as non-stationary solutions. The canonical distribution, describing equilibrium, provides a stationary solution also in the microcanonical ensemble, which leads to order in a system with ferromagnetic coupling at low temperatures. On the other hand, the microcanonical ensemble admits additional stationary and non-stationary solutions; the latter allows dynamical order, characterized by multiple degrees of clustering, for both ferromagnetic and antiferromagnetic interactions. We present a detailed stability analysis of these solutions: In a ferromagnetic system, the canonical distribution is observed stable down to a certain temperature, which tends to get lower as the number of Fourier components of the perturbed distribution is increased in the analysis. The non-stationary solution remains neutrally stable below the critical temperature, indicating inequivalence between the two ensembles. For antiferromagnetic systems, all solutions are found to be neutrally stable at all temperatures, suggesting that dynamical ordering is relatively easy to observe at low temperatures compared with ferromagnetic systems.

cond-mat.stat-mech↗

arXiv2005

1/f spectrum in the information transfer model for mass extinction

We study the information transfer model for biological evolution with several kinds of fitness function. The system is stimulated to volve into a stationary state, depending on the fitness function and on the dimension of the lattice formed by the species. In particular the system yields time series of the mutation rate which exhibits the $1/f$ spectrum, thus explains the power-law behavior in fossil data. Effects of shortcuts introduced on the lattice are also examined and the evolution activity is usually found to increase in a well-growing system although the reduction of the overall activity may also be observed in the presence of shortcuts, depending on the initial configuration.

cond-mat.stat-mech↗

arXiv2005

Critical currents for vortex defect motion in superconducting arrays

We study numerically the motion of vortices in two-dimensional arrays of resistively shunted Josephson junctions. An extra vortex is created in the ground states by introducing novel boundary conditions and made mobile by applying external currents. We then measure critical currents and the corresponding pinning energy barriers to vortex motion, which in the unfrustrated case agree well with previous theoretical and experimental findings. In the fully frustrated case our results also give good agreement with experimental ones, in sharp contrast with the existing theoretical prediction. A physical explanation is provided in relation with the vortex motion observed in simulations.

cond-mat.stat-mech↗

arXiv2005

Entropic sampling dynamics of the globally-coupled kinetic Ising model

The entropic sampling dynamics based on the reversible information transfer to and from the environment is applied to the globally coupled Ising model in the presence of an oscillating magnetic field. When the driving frequency is low enough, coherence between the magnetization and the external magnetic field is observed; such behavior tends to weaken with the system size. The time-scale matching between the intrinsic time scale, defined in the absence of the external magnetic field, and the extrinsic time scale, given by the inverse of the driving frequency, is used to explain the observed coherence behavior.

cond-mat.stat-mech↗

arXiv2005

A Molecular Dynamics Computer Simulation Study of Room-Temperature Ionic Liquids: II. Equilibrium and Nonequilibrium Solvation Dynamics

The molecular dynamics (MD) simulation study of solvation structure and free energetics in 1-ethyl-3-methylimidazolium chloride and 1-ethyl-3-methylimidazolium hexafluorophosphate using a probe solute in the preceding article [Y. Shim, M. Y. Choi and H. J. Kim, cond-mat/0501305] is extended to investigate dynamic properties of these liquids. Solvent fluctuation dynamics near equilibrium are studied via MD and associated time-depedent friction is analyzed via the generalized Langevin equation. Nonequilibrium solvent relaxation following an instantaneous change in the solute charge distribution and accompanying solvent structure reorganization are also investigated. Both equilibrium and nonequilibrium solvation dynamics are characterized by at least two vastly different time scales--a subpicosecond inertial regime followed by a slow diffusive regime. Solvent regions contributing to the subpicosecond nonequilibrium relaxation are found to vary significantly with initial solvation configurations, especially near the solute. If the solvent density near the solute is sufficiently high at the outset of the relaxation, subpicosecond dynamics are mainly governed by the motions of a few ions close to the solute. By contrast, in the case of a low local density, solvent ions located not only close to but also relatively far from the solute participate in the subpicosecond relaxation. Despite this difference, linear response holds reasonably well in both ionic liquids.

cond-mat.soft↗

arXiv2005

A molecular dynamics computer simulation study of room-temperature ionic liquids. I. Equilibrium solvation structure and free energetics

Solvation in 1-ethyl-3-methylmidazolium chloride and in 1-ethyl-3-methylimidazolium hexafluorophosphate near equilibrium is investigated via molecular dynamics computer simulations with diatomic and benzenelike molecules employed as probe solutes. It is found that electrostriction plays an important role in both solvation structure and free energetics. The angular and radial distributions of cations and anions become more structured and their densities near the solute become enhanced as the solute charge separation grows. Due to the enhancement in structural rigidity induced by electrostriction, the force constant associated with solvent configuration fluctuations relevant to charge shift and transfer processes is also found to increase. The effective polarity and reorganization free energies of these ionic liquids are analyzed and compared with those of highly polar acetonitrile. Their screening behavior of electric charges is also investigated.

cond-mat.soft↗

arXiv2005

Slow relaxation in the Ising model on a small-world network with strong long-range interactions

We consider the Ising model on a small-world network, where the long-range interaction strength $J_2$ is in general different from the local interaction strength $J_1$, and examine its relaxation behaviors as well as phase transitions. As $J_2/J_1$ is raised from zero, the critical temperature also increases, manifesting contributions of long-range interactions to ordering. However, it becomes saturated eventually at large values of $J_2/J_1$ and the system is found to display very slow relaxation, revealing that ordering dynamics is inhibited rather than facilitated by strong long-range interactions. To circumvent this problem, we propose a modified updating algorithm in Monte Carlo simulations, assisting the system to reach equilibrium quickly.

cond-mat.stat-mech↗

arXiv2004

Scale-free dynamics emerging from information transfer

The dynamics based on information transfer is proposed as an underlying mechanism for the scale-invariant dynamic critical behavior observed in a variety of systems. We apply the dynamics to the globally-coupled Ising model, which is analytically tractable, and show that dynamic criticality is indeed attained. Such emergence of criticality is confirmed numerically in the two-dimensional Ising model as well as the globally coupled one and in a biological evolution model. Although criticality is precise only when information transfer is reversible, it may also be observed even in the irreversible case, during the practical time scale shorter than the relaxation time.

cond-mat.stat-mech↗

arXiv2004

Collective synchronization in spatially extended systems of coupled oscillators with random frequencies

We study collective behavior of locally coupled limit-cycle oscillators with random intrinsic frequencies, spatially extended over $d$-dimensional hypercubic lattices. Phase synchronization as well as frequency entrainment are explored analytically in the linear (strong-coupling) regime and numerically in the nonlinear (weak-coupling) regime. Our analysis shows that the oscillator phases are always desynchronized up to $d=4$, which implies the lower critical dimension $d_{l}^{P}=4$ for phase synchronization. On the other hand, the oscillators behave collectively in frequency (phase velocity) even in three dimensions ($d=3$), indicating that the lower critical dimension for frequency entrainment is $d_{l}^{F}=2$. Nonlinear effects due to periodic nature of limit-cycle oscillators are found to become significant in the weak-coupling regime: So-called {\em runaway oscillators} destroy the synchronized (ordered) phase and there emerges a fully random (disordered) phase. Critical behavior near the synchronization transition into the fully random phase is unveiled via numerical investigation. Collective behavior of globally-coupled oscillators is also examined and compared with that of locally coupled oscillators.

cond-mat.stat-mech↗