arXiv subjects

Maciej Zięba

Publications and source records attributed to Maciej Zięba.

At least 19 recordsLinked to original sources

arXiv2026

CryoTracer: A Synthetic-to-Real System for Filament Instance Tracing in Cryo-EM

Particle picking in cryo-electron microscopy is commonly formulated as an object-detection problem in which individual particles are represented by bounding boxes, a natural representation for globular particles but a poor match for filaments that can extend across an entire micrograph. Existing methods reconstruct filament trajectories by linking local predictions in a separate post-processing stage, decoupling detection from instance formation and creating potential ambiguities at gaps and crossings. Directly preserving filament identity is particularly useful for polymorphic specimens, where segments originating from the same filament should remain associated. However, learning such instance-level representations is challenging because expert centerline annotations are scarce and costly to obtain. We introduce CryoTracer, a synthetic-to-real framework that addresses this limitation through procedural micrograph generation, transformer-based polyline prediction, and specimen-specific fine-tuning. Procedural pretraining exposes the model to diverse filament geometries, intersections, and imaging conditions before adaptation using a limited number of fully annotated experimental micrographs. CryoTracer represents filaments as ordered centerline polylines and optimizes their geometry using an orientation-invariant discrete Fréchet objective, enabling consistent learning regardless of tracing direction. Evaluation on established and newly expert-annotated datasets shows that CryoTracer improves instance-level filament recovery over existing particle-detection approaches. These results establish end-to-end polyline prediction as a practical alternative to detection-and-linking pipelines for recovering complete filament instances with limited micrograph annotation budgets. Code and data are available at https://github.com/cryotracer/cryotracer

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arXiv2026

Robust Importance Sampling for Rare Events via Constrained Gaussian Mixtures

We study estimating rare-event probabilities $I = \mathbb{P}(g(\mathbf{X}) > γ)$ with $\mathbf{X} \sim \mathcal{N}(\boldsymbolμ, \boldsymbolΣ)$ and general $g : \mathbb{R}^d \to \mathbb{R}$. We address this problem through importance sampling, and propose a framework that substantially improves efficiency and robustness over baselines such as crude Monte Carlo, adaptive cross-entropy, variational-inference-based methods (including reverse- and forward-KL approaches), as well as Safe-ICE, Subset Simulation, and Sequential Monte Carlo, drawing on ideas from both rare-event estimation and cross-entropy optimization. The key contribution has two parts: first, we separate the problem into coverage, to overcome the cold-start barrier, and fitting, to refine proposals once a meaningful signal is available; second, we constrain the final GMM proposal so that it has finite importance-sampling variance (since coverage alone is not sufficient -- without safeguards, importance sampling may still suffer from infinite variance). Together, these ingredients yield expressive proposals; finite variance does not by itself guarantee practical stability at a fixed sampling budget. Extensive experiments demonstrate substantial variance reduction, strong robustness across diverse benchmarks, and favorable cost--efficiency trade-offs, with the proposed approach often outperforming these baselines, particularly in high-dimensional and multimodal settings where competing methods frequently become unstable or fail. Our code is available at https://github.com/lorek/robust-cfi-is.

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arXiv2026

Robust to Which Model Change? A Unified Evaluation of Robust Counterfactual Explanations

Robust counterfactual explanations promise recourse that still works after the model behind it changes. Whether they keep that promise depends on what the change is. A small perturbation of the parameters, retraining on new data, and a new architecture are different events, and each existing method is evaluated against the one it was built for. Reported robustness scores, therefore, answer different questions and cannot be compared. We propose a unified cross-family evaluation protocol that holds factual instances and generated counterfactuals fixed while testing every method against the same eight types of model change. The benchmark compares six robust methods and two standard baselines on four tabular datasets. It characterizes every changed classifier through its outputs and reports empirical robustness together with coverage, base validity, and proximity. We find that relative performance and failure modes vary across change families. Bounded parameter perturbations change 0.95\% of test predictions on average, compared with 4.9\% for bootstrap retraining. Methods with guarantees for these perturbations do not necessarily transfer to other changes. RobX transfers most consistently in our experiments, although greater stability can require larger interventions. We argue that robust CFE methods should be evaluated through a common protocol that specifies the model changes, measures their realized behavioral magnitude, and keeps generation performance separate from robustness.

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arXiv2026

ORCA: Occlusion-Aware Refinement and Completion for Novel View Synthesis

Novel-view synthesis from a single image is a fundamentally ambiguous problem. As the camera moves away from the input viewpoint, previously hidden regions become visible, exposing missing geometry and holes in the reconstructed scene. Existing methods often rely on generative models to complete such regions. However, many of these artifacts are small gaps near depth boundaries and do not require generating new scene content. In order to eliminate expensive process of generating image we introduce ORCA, an occlusion-aware method for reconstructing and completing explorable 3D scenes from a single image. ORCA first introduces 3D structure into a Gaussian-anchor representation using monocular depth while preserving the original camera-ray correspondence. During scene exploration, missing regions are handled based on their size and structure. Small disocclusions are repaired using RGB-D information already available in the reconstruction, while generative inpainting is reserved for larger regions that cannot be reliably recovered from the scene. New Gaussian anchors are added and optimized locally without modifying the existing representation. By reducing unnecessary reliance on generative inpainting, ORCA limits generation-induced hallucinations and better preserves the content and structure of the original scene. On DIV2K, ORCA improves novel-view quality over VistaDream across all reported metrics, increasing MUSIQ from 61.60 to 68.71 and CLIP-IQA from 0.474 to 0.574. These results show that many novel-view artifacts can be repaired effectively by reusing information already present in the reconstructed scene.

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arXiv2026

Unifying Deep Stochastic Processes for Image Enhancement

Deep stochastic processes have recently become a central paradigm for image enhancement, with many methods explicitly conditioning the stochastic trajectory on the degraded input. However, the relationship between these conditional processes and standard diffusion models remains unclear. In this work, we introduce a unified perspective on stochastic image enhancement by classifying recent methods into three families of continuous-time processes: unconditional diffusion models, Ornstein-Uhlenbeck (OU) processes, and diffusion bridges. We show that all of these approaches arise from a common stochastic differential equation (SDE) formulation. This framework makes explicit that seemingly disparate methods differ primarily in their drift and diffusion terms, terminal distributions, and boundary conditions, while schedulers and samplers constitute orthogonal design choices. Leveraging this unification, we conduct a controlled empirical study across multiple image enhancement tasks using identical architectures and training protocols. Our results reveal no consistently dominant method; instead, we identify and disentangle the specific design choices that most strongly influence performance. Finally, we release ItoVision, a modular PyTorch library that implements the unified framework and enables rapid prototyping and fair comparison of stochastic image enhancement methods.

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arXiv2026

CEL: Comprehensive Counterfactual Explanations Library and Benchmark

Counterfactual explanations are a prominent approach in explainable artificial intelligence (xAI), providing actionable guidance on what input changes would alter a model's prediction to a desired outcome. While early methods primarily focused on minimal feature changes, recent work incorporates additional properties such as sparsity, actionability and plausibility. Despite this progress, fair and systematic evaluation remains challenging. Existing studies often rely on different data splits, predictive models, and evaluation metrics, which limits objective comparison across methods. To fill this gap, we introduce CEL (Counterfactual Explanations Library), a unified library and benchmark for counterfactual explanations designed to support consistent implementation and evaluation. CEL includes 18 datasets of varying size and complexity and provides implementations or reimplementations of 14 widely used counterfactual methods. Using this standardized setup, we conduct a comprehensive quantitative comparison across a variety of methods on datasets that differ in size, number, and types of attributes. The evaluation protocol incorporates multiple complementary metrics capturing validity, coverage, sparsity, proximity, and distributional plausibility, including density- and outlier-based measures to assess the realism of generated counterfactuals. To the best of our knowledge, this is the first comprehensive benchmark that systematically evaluates recent counterfactual explanation methods within a unified and reproducible framework. While prior libraries and benchmarking efforts exist in the literature, many are outdated, limited in scope, or lack consistent evaluation protocols. The proposed benchmark aims to improve reproducibility, enable fair comparison, and establish a workbench for the development of future counterfactual explanation methods.

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arXiv2026

Mind the Gap: Quantifying the Domain Gap in Cross-Sensor Diffusion Super-Resolution

Demand for high-resolution satellite imagery has increased interest in super-resolution (SR) to bridge the spatial resolution gap between freely available missions such as Sentinel-2 and commercial systems like PlanetScope. Because no sensor provides true paired low- and high-resolution observations, SR models are usually trained on synthetically degraded data, creating a domain gap on real cross-sensor imagery. In this work, we provide the first systematic study of how this synthetic-to-real mismatch affects the performance of modern diffusion-based SR models. Using a large, geometrically and temporally aligned dataset of Sentinel-2 and PlanetScope imagery, we evaluate five state-of-the-art diffusion architectures under controlled experimental settings. We also introduce LPIPS-Sat, a domain-adapted perceptual metric based on Sentinel-2 self-supervised features. Our results show two persistent challenges: synthetically trained models degrade sharply on real pairs, while models trained on real cross-sensor data exhibit optimisation difficulties and struggle to adapt to the physical and radiometric diversity. These findings highlight a key limitation of current SR and motivate methods that disentangle super-resolution from domain adaptation.

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arXiv2026

Counterfactual Explanations Under Concept Drift

Counterfactual explanations (CFEs) provide actionable recourse, but most methods assume a static framework with fixed data and a trained classifier. This assumption breaks in evolving data environments, such as data streams, where online models are repeatedly updated under concept drift. We identify CFE maintenance in this setting as a previously overlooked problem: explanations that are valid when generated may silently become invalid as the model evolves, including robust CFEs, which are not designed for continuous drift. We propose a lightweight, model-agnostic update scheme that repairs existing CFEs using local sampling to estimate validity and plausibility directions while preserving proximity to the original instance. Experiments on synthetic drifting streams show that initially created CFEs rapidly lose validity, whereas maintained CFEs preserve validity and local plausibility at a lower cost than repeated regeneration.

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arXiv2026

V4FinBench: Benchmarking Tabular Foundation Models, LLMs, and Standard Methods on Corporate Bankruptcy Prediction

Corporate bankruptcy prediction is a high-stakes financial task characterized by severe class imbalance and multi-horizon forecasting demands. Public datasets supporting it remain scarce and small: widely used free benchmarks contain between 6,000 and 80,000 company-year observations, while larger resources are behind subscription paywalls. To address this gap, we introduce V4FinBench, a benchmark of over one million company-year records from the Visegràd Group (V4) economies (2006-2021), with 131 financial and non-financial features, six prediction horizons, and a composite distress criterion jointly capturing solvency, profitability, and liquidity deterioration. V4FinBench is designed to support the evaluation of tabular and foundation-model methods under realistic class imbalance, with positive rates between 0.19% and 0.36%. We provide reference evaluations of standard tabular baselines, finetuned TabPFN, and QLoRA-finetuned Llama-3-8B. With imbalance-aware finetuning, TabPFN matches or exceeds gradient boosting at longer time horizons on both $F_1$-score and ROC-AUC. In contrast, Llama-3-8B trails gradient boosting on ROC-AUC at every horizon and is generally weaker on $F_1$-score, with the gap widening sharply beyond the immediate horizon. In an external evaluation on the American Bankruptcy Dataset, the V4FinBench-finetuned TabPFN checkpoint improves over vanilla TabPFN, suggesting that adaptation captures transferable financial-distress structure rather than only V4-specific patterns. V4FinBench is publicly released to support further evaluation and development of prediction methods on realistic financial data.

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arXiv2026

Unifying Perspectives: Plausible Counterfactual Explanations on Global, Group-wise, and Local Levels

The growing complexity of AI systems has intensified the need for transparency through Explainable AI (XAI). Counterfactual explanations (CFs) offer actionable "what-if" scenarios on three levels: Local CFs providing instance-specific insights, Global CFs addressing broader trends, and Group-wise CFs (GWCFs) striking a balance and revealing patterns within cohesive groups. Despite the availability of methods for each granularity level, the field lacks a unified method that integrates these complementary approaches. We address this limitation by proposing a gradient-based optimization method for differentiable models that generates Local, Global, and Group-wise Counterfactual Explanations in a unified manner. We especially enhance GWCF generation by combining instance grouping and counterfactual generation into a single efficient process, replacing traditional two-step methods. Moreover, to ensure trustworthiness, we innovatively introduce the integration of plausibility criteria into the GWCF domain, making explanations both valid and realistic. Our results demonstrate the method's effectiveness in balancing validity, proximity, and plausibility while optimizing group granularity, with practical utility validated through practical use cases.

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arXiv2026

A Probabilistic Consensus-Driven Approach for Robust Counterfactual Explanations

Counterfactual explanations (CFEs) are essential for interpreting black-box models, yet they often become invalid when models are slightly changed. Existing methods for generating robust CFEs are often limited to specific types of models, require costly tuning, or inflexible robustness controls. We propose a novel approach that jointly models the data distribution and the space of plausible model decisions to ensure robustness to model changes. Using a probabilistic consensus over a model ensemble, we train a conditional normalizing flow that captures the data density under varying levels of classifier agreement. At inference time, a single interpretable parameter controls the robustness level; it specifies the minimum fraction of models that should agree on the target class without retraining the generative model. Our method effectively pushes CFEs toward regions that are both plausible and stable across model changes. Experimental results demonstrate that our approach achieves superior empirical robustness while also maintaining good performance across other evaluation measures.

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arXiv2026

From Unlearning to UNBRANDING: A Benchmark for Trademark-Safe Text-to-Image Generation

The rapid progress of text-to-image diffusion models raises significant concerns regarding the unauthorized reproduction of trademarked content. While prior work targets general concepts (e.g., styles, celebrities), it fails to address specific brand identifiers. Brand recognition is multi-dimensional, extending beyond explicit logos to encompass distinctive structural features (e.g., a car's front grille). To tackle this, we introduce unbranding, a novel task for the fine-grained removal of both trademarks and subtle structural brand features, while preserving semantic coherence. We construct a benchmark dataset and introduce a novel evaluation framework combining Vision Language Models (VLMs) with segmentation-based classifiers trained on human annotations of logos and trade dress features, addressing the limitations of existing brand detectors that fail to capture abstract trade dress. Furthermore, we observe that newer, higher-fidelity systems (SDXL, FLUX) synthesize brand identifiers more readily than older models, highlighting the urgency of this challenge. Our results confirm that unbranding is a distinct problem requiring specialized techniques. Project Page: https://gmum.github.io/UNBRANDING/.

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arXiv2026

GaINeR: Geometry-Aware Implicit Network Representation

Implicit Neural Representations (INRs) are widely used for modeling continuous 2D images, enabling high-fidelity reconstruction, super-resolution, and compression. Architectures such as SIREN, WIRE, and FINER demonstrate their ability to capture fine image details. However, conventional INRs lack explicit geometric structure, limiting local editing, and integration with physical simulation. To address these limitations, we propose GaINeR (Geometry-Aware Implicit Neural Representation for Image Editing), a novel framework for 2D images that combines trainable Gaussian distributions with a neural network-based INR. For a given image coordinate, the model retrieves the K nearest Gaussians, aggregates distance-weighted embeddings, and predicts the RGB value via a neural network. This design enables continuous image representation, interpretable geometric structure, and flexible local editing, providing a foundation for physically aware and interactive image manipulation. Our method supports geometry-consistent transformations, seamless super-resolution, and integration with physics-based simulations. Moreover, the Gaussian representation allows lifting a single 2D image into a geometry-aware 3D representation, enabling depth-guided editing. Experiments demonstrate that GaINeR achieves state-of-the-art reconstruction quality while maintaining flexible and physically consistent image editing. The official implementation of our method is publicly available at https://github.com/WJakubowska/GaINeR.

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arXiv2026

Towards plausibility in time series counterfactual explanations

We present a new method for generating plausible counterfactual explanations for time series classification problems. The approach performs gradient-based optimization directly in the input space. To enforce plausibility, we integrate soft-DTW (dynamic time warping) alignment with $k$-nearest neighbors from the target class, which effectively encourages the generated counterfactuals to adopt a realistic temporal structure. The overall optimization objective is a multi-faceted loss function that balances key counterfactual properties. It incorporates losses for validity, sparsity, and proximity, alongside the novel soft-DTW-based plausibility component. We conduct an evaluation of our method against several strong reference approaches, measuring the key properties of the generated counterfactuals across multiple dimensions. The results demonstrate that our method achieves competitive performance in validity while significantly outperforming existing approaches in distributional alignment with the target class, indicating superior temporal realism. Furthermore, a qualitative analysis highlights the critical limitations of existing methods in preserving realistic temporal structure. This work shows that the proposed method consistently generates counterfactual explanations for time series classifiers that are not only valid but also highly plausible and consistent with temporal patterns.

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arXiv2026

CounterFlowNet: From Minimal Changes to Meaningful Counterfactual Explanations

Counterfactual explanations (CFs) provide human-interpretable insights into model's predictions by identifying minimal changes to input features that would alter the model's output. However, existing methods struggle to generate multiple high-quality explanations that (1) affect only a small portion of the features, (2) can be applied to tabular data with heterogeneous features, and (3) are consistent with the user-defined constraints. We propose CounterFlowNet, a generative approach that formulates CF generation as sequential feature modification using conditional Generative Flow Networks (GFlowNet). CounterFlowNet is trained to sample CFs proportionally to a user-specified reward function that can encode key CF desiderata: validity, sparsity, proximity and plausibility, encouraging high-quality explanations. The sequential formulation yields highly sparse edits, while a unified action space seamlessly supports continuous and categorical features. Moreover, actionability constraints, such as immutability and monotonicity of features, can be enforced at inference time via action masking, without retraining. Experiments on eight datasets under two evaluation protocols demonstrate that CounterFlowNet achieves superior trade-offs between validity, sparsity, plausibility, and diversity with full satisfaction of the given constraints.

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arXiv2026

Reducing Estimation Uncertainty Using Normalizing Flows and Stratification

Estimating the expectation of a real-valued function of a random variable from sample data is a critical aspect of statistical analysis, with far-reaching implications in various applications. Current methodologies typically assume (semi-)parametric distributions such as Gaussian or mixed Gaussian, leading to significant estimation uncertainty if these assumptions do not hold. We propose a flow-based model, integrated with stratified sampling, that leverages a parametrized neural network to offer greater flexibility in modeling unknown data distributions, thereby mitigating this limitation. Our model shows a marked reduction in estimation uncertainty across multiple datasets, including high-dimensional (30 and 128) ones, outperforming crude Monte Carlo estimators and Gaussian mixture models. Reproducible code is available at https://github.com/rnoxy/flowstrat.

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arXiv2025

Are Foundation Models Useful for Bankruptcy Prediction?

Foundation models have shown promise across various financial applications, yet their effectiveness for corporate bankruptcy prediction remains systematically unevaluated against established methods. We study bankruptcy forecasting using Llama-3.3-70B-Instruct and TabPFN, evaluated on large, highly imbalanced datasets of over one million company records from the Visegrád Group. We provide the first systematic comparison of foundation models against classical machine learning baselines for this task. Our results show that models such as XGBoost and CatBoost consistently outperform foundation models across all prediction horizons. LLM-based approaches suffer from unreliable probability estimates, undermining their use in risk-sensitive financial settings. TabPFN, while competitive with simpler baselines, requires substantial computational resources with costs not justified by performance gains. These findings suggest that, despite their generality, current foundation models remain less effective than specialized methods for bankruptcy forecasting.

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arXiv2025

DiCoFlex: Model-agnostic diverse counterfactuals with flexible control

Counterfactual explanations play a pivotal role in explainable artificial intelligence (XAI) by offering intuitive, human-understandable alternatives that elucidate machine learning model decisions. Despite their significance, existing methods for generating counterfactuals often require constant access to the predictive model, involve computationally intensive optimization for each instance and lack the flexibility to adapt to new user-defined constraints without retraining. In this paper, we propose DiCoFlex, a novel model-agnostic, conditional generative framework that produces multiple diverse counterfactuals in a single forward pass. Leveraging conditional normalizing flows trained solely on labeled data, DiCoFlex addresses key limitations by enabling real-time user-driven customization of constraints such as sparsity and actionability at inference time. Extensive experiments on standard benchmark datasets show that DiCoFlex outperforms existing methods in terms of validity, diversity, proximity, and constraint adherence, making it a practical and scalable solution for counterfactual generation in sensitive decision-making domains.

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