arXiv subjects

Manoj Varma

Publications and source records attributed to Manoj Varma.

12 recordsLinked to original sources

arXiv2025

On-Chip and Off-Chip TIA Amplifiers for Nanopore Signal Readout Design, Performance and Challenges: A Review

Advancements in biomedical research have driven continuous innovations in sensing and diagnostic technologies. Among these, nanopore based single molecule sensing and sequencing is rapidly emerging as a powerful and versatile sensing methodology. Advancements in nanopore based approaches require concomitant improvements in the electronic readout methods employed, from the point of low noise, bandwidth and form factor. This article focuses on current sensing circuits designed and employed for ultra low noise nanopore signal readout, addressing the fundamental limitations of traditional off chip transimpedance amplifiers (TIAs), which suffer from high input parasitic capacitance, bandwidth constraints, and increased noise at high frequencies. This review explores the latest design schemes and circuit structures classified into on-chip and off-chip TIA designs, highlighting their design implementation, performance, respective challenges and explores the interplay between noise performance, capacitance, and bandwidth across diverse transimpedance amplifier (TIA) configurations. Emphasis is placed on characterizing noise response under varying parasitic capacitance and operational frequencies, a systematic evaluation not extensively addressed in prior literature while also considering the allowable input current compliance range limitations. The review also compares the widely used Axopatch 200B system to the designs reported in literature. The findings offer valuable insights into optimizing TIA designs for enhanced signal integrity in high speed and high sensitivity applications focusing on noise reduction, impedance matching, DC blocking, and offset cancellation techniques.

eess.SP↗

arXiv2025

Test and Calibration of the Solar Ultraviolet Imaging Telescope (SUIT) on board Aditya-L1

The Solar Ultraviolet Imaging Telescope (SUIT) on board the AdityaL1 mission observes the Sun in the 200-400 nm wavelength range. This paper presents the results of various on ground and on board tests and their comparison with the specifications. Moreover, we also present the scheme for data calibration. We demonstrate that the test results are compliant with the specified figures, except the spatial resolution. Such discrepancy will limit the photometric measurements only, at a scale of 2.2" instead of 1.4" as originally envisioned. The results obtained here show that SUIT observations open up a new window for solar observations.

astro-ph.IM↗

arXiv2025

The Solar Ultraviolet Imaging Telescope on board Aditya-L1

The Solar Ultraviolet Imaging Telescope (SUIT) is an instrument on the Aditya-L1 mission of the Indian Space Research Organization (ISRO) launched on September 02, 2023. SUIT continuously provides, near-simultaneous full-disk and region-of-interest images of the Sun, slicing through the photosphere and chromosphere and covering a field of view up to 1.5 solar radii. For this purpose, SUIT uses 11 filters tuned at different wavelengths in the 200{--}400~nm range, including the Mg~{\sc ii} h~and~k and Ca~{\sc ii}~H spectral lines. The observations made by SUIT help us understand the magnetic coupling of the lower and middle solar atmosphere. In addition, for the first time, it allows the measurements of spatially resolved solar broad-band radiation in the near and mid ultraviolet, which will help constrain the variability of the solar ultraviolet irradiance in a wavelength range that is central for the chemistry of the Earth's atmosphere. This paper discusses the details of the instrument and data products.

astro-ph.SR↗

arXiv2023

Role of single particle motility statistics on efficiency of targeted delivery of micro-robot swarms

The study of dynamics of single active particles plays an important role in the development of artificial or hybrid micro-systems for bio-medical and other applications at micro-scale. Here, we utilize the results of these studies to better understand their implications for the specific application of drug delivery. We analyze the variations in the capture efficiency for different types of motion dynamics without inter-particle interactions and compare the results. We also discuss the reasons for the same and describe the specific parameters that affect the capture efficiency, which in turn helps in both hardware and control design of a micro-bot swarm system for drug delivery.

cs.RO↗

arXiv2023

Navigation of micro-robot swarms for targeted delivery using reinforcement learning

Micro robotics is quickly emerging to be a promising technological solution to many medical treatments with focus on targeted drug delivery. They are effective when working in swarms whose individual control is mostly infeasible owing to their minute size. Controlling a number of robots with a single controller is thus important and artificial intelligence can help us perform this task successfully. In this work, we use the Reinforcement Learning (RL) algorithms Proximal Policy Optimization (PPO) and Robust Policy Optimization (RPO) to navigate a swarm of 4, 9 and 16 microswimmers under hydrodynamic effects, controlled by their orientation, towards a circular absorbing target. We look at both PPO and RPO performances with limited state information scenarios and also test their robustness for random target location and size. We use curriculum learning to improve upon the performance and demonstrate the same in learning to navigate a swarm of 25 swimmers and steering the swarm to exemplify the manoeuvring capabilities of the RL model.

cs.RO↗

arXiv2021

Quality-Quantity Trade-offs in Tests for Management of COVID-19-like Epidemics

There are multiple testing methods to ascertain an infection in an individual and they vary in their performances, cost and delay. Unfortunately, better performing tests are sometimes costlier and time consuming and can only be done for a small fraction of the population. On the other hand, greater number of individuals can be tested using a cheaper, rapid test, but may only provide less reliable results. In this work, we studied the interplay between cost and delay of the tests as well the additional advantages offered by partial and complete lockdowns. To understand the influence of different test strategies, we implemented them on realistic random social networks with a COVID-19-like epidemic in progression. Specifically, we compared the performance of two tests mimicking the characteristics of popular tests implemented for COVID-19 detection. We present procedures and intuitive understanding to ascertain the optimum combination of the tests to minimize the peak infection as well as total quarantine days when the number of tests is constrained by a fixed total budget.

cs.SI↗

arXiv2019

Fundamental Limitations in Biomarker Based Early Disease Diagnosis

Clinical biosensors with low detection limit hold significant promise in the early diagnosis of debilitating diseases. Recent progress in sensor development has led to the demonstration of detection capable of detecting target molecules even down to single-molecule level. One crucial performance parameter which is not adequately discussed is the issue of measurement fidelity in such sensors. We define measurement fidelity based on the false positive rate of the system as we expect systems with higher sensitivity to concomitantly respond more to interfering molecules thus increasing the false-positive rates. We present a model which allows us to estimate the limit of detection of a biosensor system constrained by a specified false-positive rate. Two major results emerging from our model is that a) there is a lower bound to the detection limit for a target molecule determined by the variation in the concentration of background molecules interfering with the molecular recognition process and b) systems which use a secondary label, such as a fluorophore, can achieve lower detection limits for a given false positive rate. We also present data collected from literature to support our model. The insights from our model will be useful in the systematic design of future clinical biosensors to achieve relevant detection limits with assured fidelity.

physics.med-ph↗

arXiv2019

Tuning the torque-speed characteristics of bacterial flagellar motor to enhance the swimming speed

In a classic paper, Edward Purcell analysed the dynamics of flagellated bacterial swimmers and derived a geometrical relationship which optimizes the propulsion efficiency. Experimental measurements for wild-type bacterial species E. coli have revealed that they closely satisfy this geometric optimality. However, the dependence of the flagellar motor speed on the load and more generally the role of the torque-speed characteristics of the flagellar motor is not considered in Purcell's original analysis. Here we derive a tuned condition representing a match between the flagella geometry and the torque-speed characteristics of the flagellar motor to maximize the bacterial swimming speed for a given load. This condition is independent of the geometric optimality condition derived by Purcell and interestingly this condition is not satisfied by wild-type E. coli which swim 2-3 times slower than the maximum possible speed given the amount of available motor torque. Our analysis also reveals the existence of an anomalous propulsion regime, where the swim speed increases with increasing load (drag). Finally, we present experimental data which supports our analysis.

physics.bio-ph↗

arXiv2018

A Null-model Exhibiting Synchronized Dynamics in Uncoupled Oscillators

The phenomenon of phase synchronization of oscillatory systems arising out of feedback coupling is ubiquitous across physics and biology. In noisy, complex systems, one generally observes transient epochs of synchronization followed by non-synchronous dynamics. How does one guarantee that the observed transient epochs of synchronization are arising from an underlying feedback mechanism and not from some peculiar statistical properties of the system? This question is particularly important for complex biological systems where the search for a non-existent feedback mechanism may turn out be an enormous waste of resources. In this article, we propose a null model for synchronization motivated by expectations on the dynamical behaviour of biological systems to provide a quantitative measure of the confidence with which one can infer the existence of a feedback mechanism based on observation of transient synchronized behaviour. We demonstrate the application of our null model to the phenomenon of gait synchronization in free-swimming nematodes, C. elegans.

physics.bio-ph↗

arXiv2017

Thermo-optic coefficient measurement of liquids using silicon photonic microring resonators

On-chip measurement of thermo-optic coefficient (TOC) of samples along with on-chip temperature measurements can be used to compensate for thermal fluctuation induced noise in refractometry using integrated photonic sensors. In this article we demonstrate a device design and describe the method to extract TOCs of liquid samples using resonant wavelength shifts of a silicon microring resonator. The TOCs of three standard fluids; De-ionized water, Ethanol and Isopropanol, were determined using our sensor and show a good agreement with values reported in literature. A mechanism for tracking of on-chip temperature variations is also included for ensuring accuracy of TOC measurements. Potential applications of the demonstrated on-chip TOC sensor include improvements in accuracy of refractive index measurements and multiparametric analysis of biochemical analytes.

physics.ins-det↗

arXiv2017

Trapping/Pinning of colloidal microspheres over glass substrate using surface features

Suspensions of micro and nano particles made of Polystyrene, Poly(methyl methacrylate), Silicon dioxide etc. have been a standard model system to understand colloidal physics. . These systems have proved useful insights into phenomena such as self-assembly. Colloidal model systems are also extensively used to simulate many condensed matter phenomena such as dynamics in a quenched disordered system and glass transition. A precise control of particles using optical or holographic tweezers is essential for such studies. However, studies of collective phenomena such as jamming and flocking behaviour in a disordered space are limited due to the low throughput of the optical trapping techniques.In this article, we present a technique where we trap and pin polystyrene microspheres ~ 10 μm over triangular-crest shaped microstructures in a microfluidic environment. Trapping/Pinning occurs due to the combined effect of hydrodynamic interaction and non-specific adhesion forces. This method allows trapping and pinning of microspheres in any arbitrary pattern with a high degree of spatial accuracy which can be useful in studying fundamentals of various collective phenomena as well as in applications such as bead detachment assay based biosensors.

cond-mat.soft↗

arXiv2015

Spotting 2-D Atomic Layers on Aluminum Nitride Thin Films

The availability of large-area substrates imposes an important constraint on the technological and commercial realization of devices made of layered materials. Aluminum nitride films on silicon are shown to be promising candidate materials as large-area substrates for such devices. Herein, the optical contrast of exemplar 2D layers - MoS2and graphene - on AlN films has been investigated as a necessary first step to realize devices on these substrates. Significant contrast enhancements are predicted and observed on AlN films compared to conventional SiO2films. Quantitative estimates of experimental contrast using reflectance spectroscopy show very good agreement with predicted values.

cond-mat.mtrl-sci↗