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Marija Bezbradica

Publications and source records attributed to Marija Bezbradica.

10 recordsLinked to original sources

Adaptation Interfaces for In-Context Tabular Foundation Models in Time-to-Event Prediction

Tabular foundation models (TabFMs) achieve strong performance on structured data, particularly for standard classification and regression problems. Yet, extending them to censored time-to-event prediction is challenging because it requires properly handling censoring and event-time dynamics. Building on our prior work, we further link TabFMs with CoxPH and DeepHit and revise the context-resampled training procedure. We evaluate temporal zero-shot reformulation, classification-based fine-tuning, and survival-head adaptation using frozen TabFM backbones on 74 single-risk data sets, and we additionally study 4 competing-risk data sets. Zero-shot inference is effective on smaller single-risk data sets, whereas supervised adaptation becomes increasingly advantageous as data sets scale. Cox provides the most reliably strong interface, especially for Integrated Brier Score (IBS) on larger data sets. DeepHit is relatively stronger for the time-dependent Concordance Index than for IBS, while cause-specific MTLR ranks highest among the TabFM survival heads in the four-data-set competing-risk analysis. Classification fine-tuning becomes more competitive with zero-shot inference as data sets grow but remains weaker for probabilistic prediction. Overall, our results indicate that effective TabFM transfer depends on the data regime and on the statistical structure represented by the chosen adaptation interface. The implementation scripts used for this work are available at https://github.com/kaylode/survival-fm.

cs.LG

Retrieval-aligned Tabular Foundation Models Enable Robust Clinical Risk Prediction in Electronic Health Records Under Real-world Constraints

Clinical prediction from structured electronic health records (EHRs) is challenging due to high dimensionality, heterogeneity, class imbalance, and distribution shift. While tabular in-context learning (TICL) and retrieval-augmented methods perform well on generic benchmarks, their behavior in clinical settings remains unclear. We present a multi-cohort EHR benchmark comparing classical, deep tabular, and TICL models across varying data scale, feature dimensionality, outcome rarity, and cross-cohort generalization. PFN-based TICL models are sample-efficient in low-data regimes but degrade under naive distance-based retrieval as heterogeneity and imbalance increase. We propose AWARE, a task-aligned retrieval framework using supervised embedding learning and lightweight adapters. AWARE improves AUPRC by up to 12.2% under extreme imbalance, with gains increasing with data complexity. Our results identify retrieval quality and retrieval-inference alignment as key bottlenecks for deploying tabular in-context learning in clinical prediction.

cs.AI

Tabular Foundation Models for Clinical Survival Analysis via Survival-Aware Adaptation

Predicting time-to-event outcomes such as mortality is a fundamental task in clinical decision-making, commonly addressed through survival analysis. While classical statistical and deep learning approaches have been widely studied, they typically require task-specific training and sufficient labeled data. Recent advances in tabular foundation models offer a new paradigm by learning general-purpose representations for structured data. However, their applicability to censored time-to-event prediction in clinical settings remains underexplored, as typical applications are restricted to discrete classification rather than survival analysis tasks. In this work, we propose a lightweight adaptation approach for applying tabular foundation models to clinical survival analysis by directly training a survival-aware head on top of the pretrained representations. We study representative architectures, including TabPFN, TabDPT, and TabICL, and adapt them using a multi-task logistic regression (MTLR) head to model right-censored time-to-event outcomes. We evaluate this approach on a diverse set of public survival benchmarks and two large-scale ICU cohorts, MIMIC-IV and eICU. Our results show that this transfer learning approach achieves competitive or superior performance compared to strong baselines. On MIMIC-IV, TabDPT-FT-MTLR reaches a C-index of 0.856, corresponding to a relative improvement of +1.4% over the best non-FM baseline (DeepSurv, 0.844) and +6.7% over the best zero-shot model (0.802). On eICU, TabICL-FT-MTLR achieves 0.797, yielding gains of +1.7% (DeepSurv, 0.784) and +6.4% (0.749), respectively. These findings highlight the importance of combining pretrained tabular representations with survival-aware objectives and suggest that tabular foundation models provide a practical and effective alternative for clinical survival prediction.

cs.LG

Community-level Contagion among Diverse Financial Assets

As global financial markets become increasingly interconnected, financial contagion has developed into a major influencer of asset price dynamics. Motivated by this context, our study explores financial contagion both within and between asset communities. We contribute to the literature by examining the contagion phenomenon at the community level rather than among individual assets. Our experiments rely on high-frequency data comprising cryptocurrencies, stocks and US ETFs over the 4-year period from April 2019 to May 2023. Using the Louvain community detection algorithm, Vector Autoregression contagion detection model and Tracy-Widom random matrix theory for noise removal from financial assets, we present three main findings. Firstly, while the magnitude of contagion remains relatively stable over time, contagion density (the percentage of asset pairs exhibiting contagion within a financial system) increases. This suggests that market uncertainty is better characterized by the transmission of shocks more broadly than by the strength of any single spillover. Secondly, there is no significant difference between intra- and inter-community contagion, indicating that contagion is a system-wide phenomenon rather than being confined to specific asset groups. Lastly, certain communities themselves, especially those dominated by Information Technology assets, tend to act as major contagion transmitters in the financial network over the examined period, spreading shocks with high densities to many other communities. Our findings suggest that traditional risk management strategies such as portfolio diversification through investing in low-correlated assets or different types of investment vehicle might be insufficient due to widespread contagion.

physics.soc-ph

Filtering amplitude dependence of correlation dynamics in complex systems: application to the cryptocurrency market

Based on the cryptocurrency market dynamics, this study presents a general methodology for analyzing evolving correlation structures in complex systems using the $q$-dependent detrended cross-correlation coefficient ρ(q,s). By extending traditional metrics, this approach captures correlations at varying fluctuation amplitudes and time scales. The method employs $q$-dependent minimum spanning trees ($q$MSTs) to visualize evolving network structures. Using minute-by-minute exchange rate data for 140 cryptocurrencies on Binance (Jan 2021-Oct 2024), a rolling window analysis reveals significant shifts in $q$MSTs, notably around April 2022 during the Terra/Luna crash. Initially centralized around Bitcoin (BTC), the network later decentralized, with Ethereum (ETH) and others gaining prominence. Spectral analysis confirms BTC's declining dominance and increased diversification among assets. A key finding is that medium-scale fluctuations exhibit stronger correlations than large-scale ones, with $q$MSTs based on the latter being more decentralized. Properly exploiting such facts may offer the possibility of a more flexible optimal portfolio construction. Distance metrics highlight that major disruptions amplify correlation differences, leading to fully decentralized structures during crashes. These results demonstrate $q$MSTs' effectiveness in uncovering fluctuation-dependent correlations, with potential applications beyond finance, including biology, social and other complex systems.

q-fin.ST

Explainable AI for Infection Prevention and Control: Modeling CPE Acquisition and Patient Outcomes in an Irish Hospital with Transformers

Carbapenemase-Producing Enterobacteriace poses a critical concern for infection prevention and control in hospitals. However, predictive modeling of previously highlighted CPE-associated risks such as readmission, mortality, and extended length of stay (LOS) remains underexplored, particularly with modern deep learning approaches. This study introduces an eXplainable AI modeling framework to investigate CPE impact on patient outcomes from Electronic Medical Records data of an Irish hospital. We analyzed an inpatient dataset from an Irish acute hospital, incorporating diagnostic codes, ward transitions, patient demographics, infection-related variables and contact network features. Several Transformer-based architectures were benchmarked alongside traditional machine learning models. Clinical outcomes were predicted, and XAI techniques were applied to interpret model decisions. Our framework successfully demonstrated the utility of Transformer-based models, with TabTransformer consistently outperforming baselines across multiple clinical prediction tasks, especially for CPE acquisition (AUROC and sensitivity). We found infection-related features, including historical hospital exposure, admission context, and network centrality measures, to be highly influential in predicting patient outcomes and CPE acquisition risk. Explainability analyses revealed that features like "Area of Residence", "Admission Ward" and prior admissions are key risk factors. Network variables like "Ward PageRank" also ranked highly, reflecting the potential value of structural exposure information. This study presents a robust and explainable AI framework for analyzing complex EMR data to identify key risk factors and predict CPE-related outcomes. Our findings underscore the superior performance of the Transformer models and highlight the importance of diverse clinical and network features.

cs.AI

Herding Unmasked: Insights into Cryptocurrencies, Stocks and US ETFs

Herding behavior has become a familiar phenomenon to investors, with potential dangers of both undervaluing and overvaluing assets, while also threatening market stability. This study contributes to the literature on herding behavior by using a recent dataset, covering the most impactful events of recent years. To our knowledge, this is the first study examining herding behavior across three different types of investment vehicle and also the first study observing herding at a community (subset) level. Specifically, we first explore this phenomenon in each separate type of investment vehicle, namely stocks, US ETFs and cryptocurrencies, using the Cross-Sectional Absolute Deviation model. We find mostly similar herding patterns for stocks and US ETFs. Subsequently, the same experiment is implemented on a combination of all three investment vehicles. For a deeper investigation, we adopt graph-based techniques including the Minimum Spanning Tree and Louvain community detection to partition the combination into smaller subsets to detect herding behavior for each subset. We find that herding behavior exists at all times across all types of investment vehicle at a subset level, although perhaps not at the superset level, and that this herding behavior tends to stem from specific events that solely impact that subset of assets. Lastly, we explore herding by examining the financial contagion effects between these types of investment vehicle. Results show that US ETFs not only have a tendency to propagate similar trading behaviors in stocks and especially cryptocurrencies but also show self-reinforcing herding behavior, acting as drivers of their own trends.

q-fin.MF

Exploring the Trie of Rules: a fast data structure for the representation of association rules

Association rule mining techniques can generate a large volume of sequential data when implemented on transactional databases. Extracting insights from a large set of association rules has been found to be a challenging process. When examining a ruleset, the fundamental question is how to summarise and represent meaningful mined knowledge efficiently. Many algorithms and strategies have been developed to address issue of knowledge extraction; however, the effectiveness of this process can be limited by the data structures. A better data structure can sufficiently affect the speed of the knowledge extraction process. This paper proposes a novel data structure, called the Trie of rules, for storing a ruleset that is generated by association rule mining. The resulting data structure is a prefix-tree graph structure made of pre-mined rules. This graph stores the rules as paths within the prefix-tree in a way that similar rules overlay each other. Each node in the tree represents a rule where a consequent is this node, and an antecedent is a path from this node to the root of the tree. The evaluation showed that the proposed representation technique is promising. It compresses a ruleset with almost no data loss and benefits in terms of time for basic operations such as searching for a specific rule and sorting, which is the base for many knowledge discovery methods. Moreover, our method demonstrated a significant improvement in traversing time, achieving an 8-fold increase compared to traditional data structures.

cs.LG

High Fidelity Synthetic Face Generation for Rosacea Skin Condition from Limited Data

Similar to the majority of deep learning applications, diagnosing skin diseases using computer vision and deep learning often requires a large volume of data. However, obtaining sufficient data for particular types of facial skin conditions can be difficult due to privacy concerns. As a result, conditions like Rosacea are often understudied in computer-aided diagnosis. The limited availability of data for facial skin conditions has led to the investigation of alternative methods for computer-aided diagnosis. In recent years, Generative Adversarial Networks (GANs), mainly variants of StyleGANs, have demonstrated promising results in generating synthetic facial images. In this study, for the first time, a small dataset of Rosacea with 300 full-face images is utilized to further investigate the possibility of generating synthetic data. The preliminary experiments show how fine-tuning the model and varying experimental settings significantly affect the fidelity of the Rosacea features. It is demonstrated that $R_1$ Regularization strength helps achieve high-fidelity details. Additionally, this study presents qualitative evaluations of synthetic/generated faces by expert dermatologists and non-specialist participants. The quantitative evaluation is presented using a few validation metric(s). Furthermore a number of limitations and future directions are discussed. Code and generated dataset are available at: \url{https://github.com/thinkercache/stylegan2-ada-pytorch}

cs.CV

Analysis of inter-transaction time fluctuations in the cryptocurrency market

We analyse tick-by-tick data representing major cryptocurrencies traded on some different cryptocurrency trading platforms. We focus on such quantities like the inter-transaction times, the number of transactions in time unit, the traded volume, and volatility. We show that the inter-transaction times show long-range power-law autocorrelations. These lead to multifractality expressed by the right-side asymmetry of the singularity spectra $f(α)$ indicating that the periods of increased market activity are characterised by richer multifractality compared to the periods of quiet market. We also show that neither the stretched exponential distribution nor the power-law-tail distribution are able to model universally the cumulative distribution functions of the quantities considered in this work. For each quantity, some data sets can be modeled by the former, some data sets by the latter, while both fail in other cases. An interesting, yet difficult to account for, observation is that parallel data sets from different trading platforms can show disparate statistical properties.

q-fin.ST