arXiv subjects

Mariya Toneva

Publications and source records attributed to Mariya Toneva.

At least 19 recordsLinked to original sources

arXiv2026

RABBiT: Rapidly adaptive BOLD foundation model via brain-tuning for accurate zero-shot and few-shot prediction of speech-elicited responses in the brain

Language understanding in the brain is context-dependent, varying across experimental stimuli and individuals, which makes it difficult to build computational models that generalize across both. This calls for a foundation model of language-evoked brain activity that can capture shared structure while adapting efficiently to new participants and inputs. We introduce RABBiT (Rapidly Adaptive BOLD foundation model via BraIn-Tuning), a compact audio-to-fMRI encoder designed for accurate zero- and few-shot prediction. A comprehensive evaluation on 324 participants across multiple unseen fMRI datasets shows that RABBiT enables accurate zero-shot prediction of fMRI responses to natural speech across auditory and language-selective regions, surpassing the SOTA foundation model for fMRI and predictions based on group averages. With as little as 10 minutes of participant-specific data, RABBiT further improves performance via parameter-efficient tuning, substantially outperforming per-participant linear models. RABBiT's performance is driven by two key innovations: (1) learned region-specific attention, and (2) a decomposition of brain responses into shared and subject-specific components, combined with a brain-tuned speech backbone. In addition to supporting strong predictive accuracy, the structured, region-specific representations that RABBiT learns enable interpretability. By eliminating the need for extensive per-participant data and model fitting, RABBiT enables scalable population-level analyses of language in the human brain. We make the code available at https://github.com/bridge-ai-neuro/rabbit.

cs.CL↗

arXiv2026

Neural Signatures of Programming Expertise: Classifying Programmer Skill Levels Using EEG Data

Accurately assessing a programmer's skill level is critical for hiring, team composition, and performance evaluation in the software industry. Conventional methods, such as coding tests or interviews, often fail to capture the full spectrum of cognitive abilities underlying programming expertise. This study explores using electroencephalography (EEG) and machine learning to investigate neural correlates of programming skill. We analyzed an existing EEG dataset recorded during code comprehension from 37 programmers with 1 to 30 years of experience (8.1 +/- 6.3 years) to examine relationships between neural activity and expertise. Additionally, we conducted classification experiments using Random Forest classifiers with diverse features for binary (experts vs. novices) and multi-class (experts, intermediates, novices) setups. We identified EEG features and brain regions associated with programming expertise. Specifically, EEG entropy showed the strongest correlation with skill level. Furthermore, experts' brains were characterized by highly localized centro-frontal activation, whereas frontal activation in other groups was part of a more distributed network. Regarding classification, our setup achieved an average accuracy of 91.83% (binary) and 78.15% (multi-class) in stratified 10-fold cross-validation, while leave-one-subject-out validation achieved 85.00% and 58.80%, respectively. Individual frequency bands outperformed full-spectrum analyses, and both program comprehension and resting-state data yielded strong results. These findings demonstrate that EEG features effectively capture neural correlates across different skill levels and highlight the potential of neural data to complement traditional methods of skill assessment.

cs.HC↗

arXiv2026

Temporal Context Reinstatement Drives Episodic-Like Order Memory in Long-Context Language Models

Human episodic memory supports the retrieval of experiences that unfold over extended timescales, yet the computational mechanisms underlying this ability remain debated due to the limited mechanistic accessibility in long-term memory experiments in humans. Long-context LLMs may offer promising ways to reveal plausible computational mechanisms that drive this type of retrieval. Here, we investigate whether and how LLMs capture the core behavioral signatures of episodic memory via a temporal order memory task. Using a new dataset of human behavior based on memory of a full-length novel, we show that models exhibit the same characteristic distance effect observed in humans on this task. We next apply long-context mechanistic interpretability analyses to uncover how models solve this task, and find that model performance relies on a one-dimensional temporal code that is reinstated during retrieval by a single time-reinstatement attention head. These findings support temporal context reinstatement as an important mechanism for episodic-like temporal-order memory in LLMs, offering new insights into how temporal aspects of long-term episodic memory may be instantiated in both artificial and biological systems.

cs.AI↗

arXiv2026

Tracking Equivalent Mechanistic Interpretations Across Neural Networks

Mechanistic interpretability (MI) is an emerging framework for interpreting neural networks. Given a task and model, MI aims to discover a succinct algorithmic process, an interpretation, that explains the model's decision process on that task. However, MI is difficult to scale and generalize. This stems in part from two key challenges: there is no precise notion of a valid interpretation; and, generating interpretations is often an ad hoc process. In this paper, we address these challenges by defining and studying the problem of interpretive equivalence: determining whether two different models share a common interpretation, without requiring an explicit description of what that interpretation is. At the core of our approach, we propose and formalize the principle that two interpretations of a model are equivalent if all of their possible implementations are also equivalent. We develop an algorithm to estimate interpretive equivalence and case study its use on Transformer-based models. To analyze our algorithm, we introduce necessary and sufficient conditions for interpretive equivalence based on models' representation similarity. We provide guarantees that simultaneously relate a model's algorithmic interpretations, circuits, and representations. Our framework lays a foundation for the development of more rigorous evaluation methods of MI and automated, generalizable interpretation discovery methods.

cs.LG↗

arXiv2026

When Language Models Lose Their Mind: The Consequences of Brain Misalignment

While brain-aligned large language models (LLMs) have garnered attention for their potential as cognitive models and for potential for enhanced safety and trustworthiness in AI, the role of this brain alignment for linguistic competence remains uncertain. In this work, we investigate the functional implications of brain alignment by introducing brain-misaligned models--LLMs intentionally trained to predict brain activity poorly while maintaining high language modeling performance. We evaluate these models on over 200 downstream tasks encompassing diverse linguistic domains, including semantics, syntax, discourse, reasoning, and morphology. By comparing brain-misaligned models with well-matched brain-aligned counterparts, we isolate the specific impact of brain alignment on language understanding. Our experiments reveal that brain misalignment substantially impairs downstream performance, highlighting the critical role of brain alignment in achieving robust linguistic competence. These findings underscore the importance of brain alignment in LLMs and offer novel insights into the relationship between neural representations and linguistic processing.

cs.CL↗

arXiv2025

The One Where They Brain-Tune for Social Cognition: Multi-Modal Brain-Tuning on Friends

Recent studies on audio models show brain-tuning - fine-tuning models to better predict corresponding fMRI activity - improves brain alignment and increases performance on downstream semantic and audio tasks. We extend this approach to a multimodal audio-video model to enhance social cognition, targeting the Superior Temporal Sulcus (STS), a key region for social processing, while subjects watch Friends. We find significant increases in brain alignment to the STS and an adjacent ROI, as well as improvements to a social cognition task related to the training data - sarcasm detection in sitcoms. In summary, our study extends brain-tuning to the multi-modal domain, demonstrating improvements to a downstream task after tuning to a relevant functional region.

cs.AI↗

arXiv2025

CLIP is All You Need for Human-like Semantic Representations in Stable Diffusion

Latent diffusion models such as Stable Diffusion achieve state-of-the-art results on text-to-image generation tasks. However, the extent to which these models have a semantic understanding of the images they generate is not well understood. In this work, we investigate whether the internal representations used by these models during text-to-image generation contain semantic information that is meaningful to humans. To do so, we perform probing on Stable Diffusion with simple regression layers that predict semantic attributes for objects and evaluate these predictions against human annotations. Surprisingly, we find that this success can actually be attributed to the text encoding occurring in CLIP rather than the reverse diffusion process. We demonstrate that groups of specific semantic attributes have markedly different decoding accuracy than the average, and are thus represented to different degrees. Finally, we show that attributes become more difficult to disambiguate from one another during the inverse diffusion process, further demonstrating the strongest semantic representation of object attributes in CLIP. We conclude that the separately trained CLIP vision-language model is what determines the human-like semantic representation, and that the diffusion process instead takes the role of a visual decoder.

cs.CV↗

arXiv2025

Large Language Models as Model Organisms for Human Associative Learning

Associative learning--forming links between co-occurring items--is fundamental to human cognition, reshaping internal representations in complex ways. Testing hypotheses on how representational changes occur in biological systems is challenging, but large language models (LLMs) offer a scalable alternative. Building on LLMs' in-context learning, we adapt a cognitive neuroscience associative learning paradigm and investigate how representations evolve across six models. Our initial findings reveal a non-monotonic pattern consistent with the Non-Monotonic Plasticity Hypothesis, with moderately similar items differentiating after learning. Leveraging the controllability of LLMs, we further show that this differentiation is modulated by the overlap of associated items with the broader vocabulary--a factor we term vocabulary interference, capturing how new associations compete with prior knowledge. We find that higher vocabulary interference amplifies differentiation, suggesting that representational change is influenced by both item similarity and global competition. Our findings position LLMs not only as powerful tools for studying representational dynamics in human-like learning systems, but also as accessible and general computational models for generating new hypotheses about the principles underlying memory reorganization in the brain.

cs.LG↗

arXiv2025

Brain-tuning Improves Generalizability and Efficiency of Brain Alignment in Speech Models

Pretrained language models are remarkably effective in aligning with human brain responses elicited by natural language stimuli, positioning them as promising model organisms for studying language processing in the brain. However, existing approaches for both estimating and improving this brain alignment are participant-dependent and highly affected by the amount of data available per participant, hindering both generalization to new participants and population-level analyses. In this work, we address these limitations by introducing a scalable, generalizable brain-tuning method, in which we fine-tune pretrained speech language models to jointly predict fMRI responses from multiple participants. We demonstrate that the resulting brain-tuned models exhibit strong individual brain alignment while generalizing across participants. Specifically, our method leads to 1) a 5-fold decrease in the amount of fMRI data needed to predict brain data from new participants, 2) up to a 50% increase in the overall brain alignment, and 3) strong generalization to new unseen datasets. Furthermore, this multi-participant brain-tuning additionally improves downstream performance on semantic tasks, suggesting that training using brain data from multiple participants leads to more generalizable semantic representations. Taken together, these findings demonstrate a bidirectional benefit between neuroscience and AI, helping bridge the gap between the two fields. We make our code and models publicly available at https://github.com/bridge-ai-neuro/multi-brain-tuning.

cs.CL↗

arXiv2025

Fine-grained Analysis of Brain-LLM Alignment through Input Attribution

Understanding the alignment between large language models (LLMs) and human brain activity can reveal computational principles underlying language processing. We introduce a fine-grained input attribution method to identify the specific words most important for brain-LLM alignment, and leverage it to study a contentious research question about brain-LLM alignment: the relationship between brain alignment (BA) and next-word prediction (NWP). Our findings reveal that BA and NWP rely on largely distinct word subsets: NWP exhibits recency and primacy biases with a focus on syntax, while BA prioritizes semantic and discourse-level information with a more targeted recency effect. This work advances our understanding of how LLMs relate to human language processing and highlights differences in feature reliance between BA and NWP. Beyond this study, our attribution method can be broadly applied to explore the cognitive relevance of model predictions in diverse language processing tasks.

cs.CL↗

arXiv2025

How do Humans and LLMs Process Confusing Code?

Already today, humans and programming assistants based on large language models (LLMs) collaborate in everyday programming tasks. Clearly, a misalignment between how LLMs and programmers comprehend code can lead to misunderstandings, inefficiencies, low code quality, and bugs. A key question in this space is whether humans and LLMs are confused by the same kind of code. This would not only guide our choices of integrating LLMs in software engineering workflows, but also inform about possible improvements of LLMs. To this end, we conducted an empirical study comparing an LLM to human programmers comprehending clean and confusing code. We operationalized comprehension for the LLM by using LLM perplexity, and for human programmers using neurophysiological responses (in particular, EEG-based fixation-related potentials). We found that LLM perplexity spikes correlate both in terms of location and amplitude with human neurophysiological responses that indicate confusion. This result suggests that LLMs and humans are similarly confused about the code. Based on these findings, we devised a data-driven, LLM-based approach to identify regions of confusion in code that elicit confusion in human programmers.

cs.SE↗

arXiv2025

Positional Biases Shift as Inputs Approach Context Window Limits

Large Language Models (LLMs) often struggle to use information across long inputs effectively. Prior work has identified positional biases, such as the Lost in the Middle (LiM) effect, where models perform better when information appears at the beginning (primacy bias) or end (recency bias) of the input, rather than in the middle. However, long-context studies have not consistently replicated these effects, raising questions about their intensity and the conditions under which they manifest. To address this, we conducted a comprehensive analysis using relative rather than absolute input lengths, defined with respect to each model's context window. Our findings reveal that the LiM effect is strongest when inputs occupy up to 50% of a model's context window. Beyond that, the primacy bias weakens, while recency bias remains relatively stable. This effectively eliminates the LiM effect; instead, we observe a distance-based bias, where model performance is better when relevant information is closer to the end of the input. Furthermore, our results suggest that successful retrieval is a prerequisite for reasoning in LLMs, and that the observed positional biases in reasoning are largely inherited from retrieval. These insights have implications for long-context tasks, the design of future LLM benchmarks, and evaluation methodologies for LLMs handling extended inputs.

cs.CL↗

arXiv2025

Brain-tuned Speech Models Better Reflect Speech Processing Stages in the Brain

Pretrained self-supervised speech models excel in speech tasks but do not reflect the hierarchy of human speech processing, as they encode rich semantics in middle layers and poor semantics in late layers. Recent work showed that brain-tuning (fine-tuning models using human brain recordings) improves speech models' semantic understanding. Here, we examine how well brain-tuned models further reflect the brain's intermediate stages of speech processing. We find that late layers of brain-tuned models substantially improve over pretrained models in their alignment with semantic language regions. Further layer-wise probing reveals that early layers remain dedicated to low-level acoustic features, while late layers become the best at complex high-level tasks. These findings show that brain-tuned models not only perform better but also exhibit a well-defined hierarchical processing going from acoustic to semantic representations, making them better model organisms for human speech processing.

cs.CL↗

arXiv2025

Position: Episodic Memory is the Missing Piece for Long-Term LLM Agents

As Large Language Models (LLMs) evolve from text-completion tools into fully fledged agents operating in dynamic environments, they must address the challenge of continually learning and retaining long-term knowledge. Many biological systems solve these challenges with episodic memory, which supports single-shot learning of instance-specific contexts. Inspired by this, we present an episodic memory framework for LLM agents, centered around five key properties of episodic memory that underlie adaptive and context-sensitive behavior. With various research efforts already partially covering these properties, this position paper argues that now is the right time for an explicit, integrated focus on episodic memory to catalyze the development of long-term agents. To this end, we outline a roadmap that unites several research directions under the goal to support all five properties of episodic memory for more efficient long-term LLM agents.

cs.AI↗

arXiv2024

Hints Help Finding and Fixing Bugs Differently in Python and Text-based Program Representations

With the recent advances in AI programming assistants such as GitHub Copilot, programming is not limited to classical programming languages anymore--programming tasks can also be expressed and solved by end-users in natural text. Despite the availability of this new programming modality, users still face difficulties with algorithmic understanding and program debugging. One promising approach to support end-users is to provide hints to help them find and fix bugs while forming and improving their programming capabilities. While it is plausible that hints can help, it is unclear which type of hint is helpful and how this depends on program representations (classic source code or a textual representation) and the user's capability of understanding the algorithmic task. To understand the role of hints in this space, we conduct a large-scale crowd-sourced study involving 753 participants investigating the effect of three types of hints (test cases, conceptual, and detailed), across two program representations (Python and text-based), and two groups of users (with clear understanding or confusion about the algorithmic task). We find that the program representation (Python vs. text) has a significant influence on the users' accuracy at finding and fixing bugs. Surprisingly, users are more accurate at finding and fixing bugs when they see the program in natural text. Hints are generally helpful in improving accuracy, but different hints help differently depending on the program representation and the user's understanding of the algorithmic task. These findings have implications for designing next-generation programming tools that provide personalized support to users, for example, by adapting the programming modality and providing hints with respect to the user's skill level and understanding.

cs.SE↗

arXiv2024

SLayR: Scene Layout Generation with Rectified Flow

We introduce SLayR, Scene Layout Generation with Rectified flow, a novel transformer-based model for text-to-layout generation which can then be paired with existing layout-to-image models to produce images. SLayR addresses a domain in which current text-to-image pipelines struggle: generating scene layouts that are of significant variety and plausibility, when the given prompt is ambiguous and does not provide constraints on the scene. SLayR surpasses existing baselines including LLMs in unconstrained generation, and can generate layouts from an open caption set. To accurately evaluate the layout generation, we introduce a new benchmark suite, including numerical metrics and a carefully designed repeatable human-evaluation procedure that assesses the plausibility and variety of generated images. We show that our method sets a new state of the art for achieving both at the same time, while being at least 3x times smaller in the number of parameters.

cs.CV↗

arXiv2024

Improving Semantic Understanding in Speech Language Models via Brain-tuning

Speech language models align with human brain responses to natural language to an impressive degree. However, current models rely heavily on low-level speech features, indicating they lack brain-relevant semantics which limits their utility as model organisms of semantic processing in the brain. In this work, we address this limitation by inducing brain-relevant bias directly into the models via fine-tuning with fMRI recordings of people listening to natural stories, a process we name brain-tuning. After testing it on 3 different pretrained model families, we show that brain-tuning not only improves overall alignment with new brain recordings in semantic language regions, but also reduces the reliance on low-level speech features for this alignment. Excitingly, we further show that brain-tuning leads to 1) consistent improvements in performance on a range of downstream tasks and 2) a representational space with increased semantic preference. Our results provide converging evidence, for the first time, that incorporating brain signals into the training of language models improves the models' semantic understanding.

cs.CL↗

arXiv2024

Assessing Episodic Memory in LLMs with Sequence Order Recall Tasks

Current LLM benchmarks focus on evaluating models' memory of facts and semantic relations, primarily assessing semantic aspects of long-term memory. However, in humans, long-term memory also includes episodic memory, which links memories to their contexts, such as the time and place they occurred. The ability to contextualize memories is crucial for many cognitive tasks and everyday functions. This form of memory has not been evaluated in LLMs with existing benchmarks. To address the gap in evaluating memory in LLMs, we introduce Sequence Order Recall Tasks (SORT), which we adapt from tasks used to study episodic memory in cognitive psychology. SORT requires LLMs to recall the correct order of text segments, and provides a general framework that is both easily extendable and does not require any additional annotations. We present an initial evaluation dataset, Book-SORT, comprising 36k pairs of segments extracted from 9 books recently added to the public domain. Based on a human experiment with 155 participants, we show that humans can recall sequence order based on long-term memory of a book. We find that models can perform the task with high accuracy when relevant text is given in-context during the SORT evaluation. However, when presented with the book text only during training, LLMs' performance on SORT falls short. By allowing to evaluate more aspects of memory, we believe that SORT will aid in the emerging development of memory-augmented models.

cs.CL↗