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Matthias Richter

Publications and source records attributed to Matthias Richter.

4 recordsLinked to original sources

COVID-BLUeS -- A Prospective Study on the Value of AI in Lung Ultrasound Analysis

As a lightweight and non-invasive imaging technique, lung ultrasound (LUS) has gained importance for assessing lung pathologies. The use of Artificial intelligence (AI) in medical decision support systems is promising due to the time- and expertise-intensive interpretation, however, due to the poor quality of existing data used for training AI models, their usability for real-world applications remains unclear. In a prospective study, we analyze data from 63 COVID-19 suspects (33 positive) collected at Maastricht University Medical Centre. Ultrasound recordings at six body locations were acquired following the BLUE protocol and manually labeled for severity of lung involvement. Several AI models were applied and trained for detection and severity of pulmonary infection. The severity of the lung infection, as assigned by human annotators based on the LUS videos, is not significantly different between COVID-19 positive and negative patients (p = 0.89). Nevertheless, the predictions of image-based AI models identify a COVID-19 infection with 65% accuracy when applied zero-shot (i.e., trained on other datasets), and up to 79% with targeted training, whereas the accuracy based on human annotations is at most 65%. Multi-modal models combining images and CBC improve significantly over image-only models. Although our analysis generally supports the value of AI in LUS assessment, the evaluated models fall short of the performance expected from previous work. We find this is due to 1) the heterogeneity of LUS datasets, limiting the generalization ability to new data, 2) the frame-based processing of AI models ignoring video-level information, and 3) lack of work on multi-modal models that can extract the most relevant information from video-, image- and variable-based inputs. To aid future research, we publish the dataset at: https://github.com/NinaWie/COVID-BLUES.

q-bio.TO

Exploration of Differentiability in a Proton Computed Tomography Simulation Framework

Objective. Algorithmic differentiation (AD) can be a useful technique to numerically optimize design and algorithmic parameters by, and quantify uncertainties in, computer simulations. However, the effectiveness of AD depends on how "well-linearizable" the software is. In this study, we assess how promising derivative information of a typical proton computed tomography (pCT) scan computer simulation is for the aforementioned applications. Approach. This study is mainly based on numerical experiments, in which we repeatedly evaluate three representative computational steps with perturbed input values. We support our observations with a review of the algorithmic steps and arithmetic operations performed by the software, using debugging techniques. Main results. The model-based iterative reconstruction (MBIR) subprocedure (at the end of the software pipeline) and the Monte Carlo (MC) simulation (at the beginning) were piecewise differentiable. Jumps in the MBIR function arose from the discrete computation of the set of voxels intersected by a proton path. Jumps in the MC function likely arose from changes in the control flow that affect the amount of consumed random numbers. The tracking algorithm solves an inherently non-differentiable problem. Significance. The MC and MBIR codes are ready for the integration of AD, and further research on surrogate models for the tracking subprocedure is necessary.

physics.med-ph

The charge sensitivity calibration of the upgraded ALICE Inner Tracking System

The ALICE detector is undergoing an upgrade for Run 3 at the LHC. A new Inner Tracking System (ITS) is part of this upgrade. The upgraded ALICE ITS features the ALPIDE, a Monolithic Active Pixel Sensor. Due to IC fabrication variations and radiation damages, the threshold values for the ALPIDE chips in ITS need to be measured and adjusted periodically to ensure the quality of data. The calibration is implemented within the ALICE Online-Offline (O$^2$) Computing System, thus it runs in the same framework as the normal operations. This paper describes the concept and first implementation of the charge sensitivity scanning procedures for the upgraded ALICE ITS in the ALICE O$^2$ System, and demonstrates the first results of the scanning of the data taken from the installed ITS.

physics.ins-det

Remote Configuration of the ProASIC3 on the ALICE Inner Tracking System Readout Unit

A Large Ion Collider Experiment (ALICE) is one of the four major experiments conducted at the CERN Large Hadron Collider (LHC). The ALICE detector is currently undergoing an upgrade for the upcoming Run 3 at the LHC. The new Inner Tracking System (ITS) sub-detector is part of this upgrade. The front-end electronics of the ITS is composed by 192 Readout Units, installed in a radiation environment. Single Event Upsets (SEUs) in the SRAM-based Xilinx Kintex Ultrascale FPGAs used in the ITS readout represent a real concern. To clear SEUs affecting the Kintex configuration memory, a secondary Flash-based Microsemi ProASIC3E (PA3) FPGA is used. This device configures and continuously scrubs the Xilinx FPGA while data-taking is ongoing, which avoids accumulation of SEUs. The communication path to the RUs is via the radiation hard Gigabit Transceiver (GBT) system on 100 m long optical links. The PA3 is reachable via the GBT Slow Control Adapter (GBT-SCA) ASIC using a dedicated JTAG bus driving channel. During the course of Run 3, it is foreseeable that the FPGA design of the PA3 will require upgrades to correct possible issues and add new functionality. It is therefore mandatory that the PA3 itself can be configured remotely, for which a dedicated software tool is needed. This paper presents the design and implementation of the distributed tools to re-configure remotely the PA3 FPGAs.

physics.ins-det