arXiv subjects

Michail-Antisthenis Tsompanas

Publications and source records attributed to Michail-Antisthenis Tsompanas.

At least 19 recordsLinked to original sources

arXiv2026

Machine Learning Driven Prediction of the Behavior of Biohybrid Actuators

Skeletal muscle-based biohybrid actuators have proved to be a promising component in soft robotics, offering efficient movement. However, their intrinsic biological variability and nonlinearity pose significant challenges for controllability and predictability. To address these issues, this study investigates the application of supervised learning, a form of machine learning, to model and predict the behavior of biohybrid machines (BHMs), focusing on a muscle ring anchored on flexible polymer pillars. First, static prediction models (i.e., random forest and neural network regressors) are trained to estimate the maximum exerted force achieved from input variables such as muscle sample, electrical stimulation parameters, and baseline exerted force. Second, a dynamic modeling framework, based on Long Short-Term Memory networks, is developed to serve as a digital twin, replicating the time series of exerted forces observed in response to electrical stimulation. Both modeling approaches demonstrate high predictive accuracy. The best performance of the static models is characterized by R2 of 0.9425, whereas the dynamic model achieves R2 of 0.9956. The static models can enable optimization of muscle actuator performance for targeted applications and required force outcomes, while the dynamic model provides a foundation for developing robustly adaptive control strategies in future biohybrid robotic systems.

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arXiv2025

Evaluating Fitness Averaging Strategies in Cooperative NeuroCoEvolution for Automated Soft Actuator Design

Soft robotics are increasingly favoured in specific applications such as healthcare, due to their adaptability, which stems from the non-linear properties of their building materials. However, these properties also pose significant challenges in designing the morphologies and controllers of soft robots. The relatively short history of this field has not yet produced sufficient knowledge to consistently derive optimal solutions. Consequently, an automated process for the design of soft robot morphologies can be extremely helpful. This study focusses on the cooperative NeuroCoEvolution of networks that are indirect representations of soft robot actuators. Both the morphologies and controllers represented by Compositional Pattern Producing Networks are evolved using the well-established method NeuroEvolution of Augmented Topologies (CPPN-NEAT). The CoEvolution of controllers and morphologies is implemented using the top n individuals from the cooperating population, with various averaging methods tested to determine the fitness of the evaluated individuals. The test-case application for this research is the optimisation of a soft actuator for a drug delivery system. The primary metric used is the maximum displacement of one end of the actuator in a specified direction. Additionally, the robustness of the evolved morphologies is assessed against a range of randomly generated controllers to simulate potential noise in real-world applications. The results of this investigation indicate that CPPN-NEAT produces superior morphologies compared to previously published results from multi-objective optimisation, with reduced computational effort and time. Moreover, the best configuration is found to be CoEvolution with the two best individuals from the cooperative population and the averaging of their fitness using the weighted mean method.

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arXiv2025

NEAT and HyperNEAT based Design for Soft Actuator Controllers

Since soft robotics are composed of compliant materials, they perform better than conventional rigid robotics in specific fields, such as medical applications. However, the field of soft robotics is fairly new, and the design process of their morphology and their controller strategies has not yet been thoroughly studied. Consequently, here, an automated design method for the controller of soft actuators based on Neuroevolution is proposed. Specifically, the suggested techniques employ Neuroevolution of Augmenting Topologies (NEAT) and Hypercube-based NEAT (HyperNEAT) to generate the synchronization profile of the components of a simulated soft actuator by employing Compositional Pattern Producing Networks (CPPNs). As a baseline methodology, a Standard Genetic Algorithm (SGA) was used. Moreover, to test the robustness of the proposed methodologies, both high- and low-performing morphologies of soft actuators were utilized as testbeds. Moreover, the use of an affluent and a more limited set of activation functions for the Neuroevolution targets was tested throughout the experiments. The results support the hypothesis that Neuroevolution based methodologies are more appropriate for designing controllers that align with both types of morphologies. In specific, NEAT performed better for all different scenarios tested and produced more simplistic networks that are easier to implement in real life applications.

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arXiv2025

Designing morphologies of soft medical devices using cooperative neuro coevolution

Soft robots have proven to outperform traditional robots in applications related to propagation in geometrically constrained environments. Designing these robots and their controllers is an intricate task, since their building materials exhibit non-linear properties. Human designs may be biased; hence, alternative designing processes should be considered. We present a cooperative neuro coevolution approach to designing the morphologies of soft actuators and their controllers for applications in drug delivery apparatus. Morphologies and controllers are encoded as compositional pattern-producing networks evolved by Neuroevolution of Augmented Topologies (NEAT) and in cooperative coevolution methodology, taking into account different collaboration methods. Four collaboration methods are studied: n best individuals, n worst individuals, n best and worst individuals, and n random individuals. As a performance baseline, the results from the implementation of Age-Fitness Pareto Optimisation (AFPO) are considered. The metrics used are the maximum displacement in upward bending and the robustness of the devices in terms of applying to the same evolved morphology a diverse set of controllers. Results suggest that the cooperative neuro coevolution approach can produce more suitable morphologies for the intended devices than AFPO.

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arXiv2024

Using neuroevolution for designing soft medical devices

Soft robots can exhibit better performance in specific tasks compared to conventional robots, particularly in healthcare-related tasks. However, the field of soft robotics is still young, and designing them often involves mimicking natural organisms or relying heavily on human experts' creativity. A formal automated design process is required. We propose the use of neuroevolution-based algorithms to automatically design initial sketches of soft actuators that can enable the movement of future medical devices, such as drug-delivering catheters. The actuator morphologies discovered by algorithms like Age-Fitness Pareto Optimization, NeuroEvolution of Augmenting Topologies (NEAT), and Hypercube-based NEAT (HyperNEAT) were compared based on the maximum displacement reached and their robustness against various control methods. Analyzing the results granted the insight that neuroevolution-based algorithms produce better-performing and more robust actuators under different control methods. Moreover, the best-performing morphologies were discovered by the NEAT algorithm. As a future work aspect, we propose using the morphologies discovered here as test beds to optimize specialized controllers, enabling more effective functionality towards the desired deflections of the suggested soft catheters.

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arXiv2024

Control of Biohybrid Actuators using NeuroEvolution

In medical-related tasks, soft robots can perform better than conventional robots because of their compliant building materials and the movements they are able perform. However, designing soft robot controllers is not an easy task, due to the non-linear properties of their materials. Since human expertise to design such controllers is yet not sufficiently effective, a formal design process is needed. The present research proposes neuroevolution-based algorithms as the core mechanism to automatically generate controllers for biohybrid actuators that can be used on future medical devices, such as a catheter that will deliver drugs. The controllers generated by methodologies based on Neuroevolution of Augmenting Topologies (NEAT) and Hypercube-based NEAT (HyperNEAT) are compared against the ones generated by a standard genetic algorithm (SGA). In specific, the metrics considered are the maximum displacement in upward bending movement and the robustness to control different biohybrid actuator morphologies without redesigning the control strategy. Results indicate that the neuroevolution-based algorithms produce better suited controllers than the SGA. In particular, NEAT designed the best controllers, achieving up to 25% higher displacement when compared with SGA-produced specialised controllers trained over a single morphology and 23% when compared with general purpose controllers trained over a set of morphologies.

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arXiv2024

NeuroEvolution algorithms applied in the designing process of biohybrid actuators

Soft robots diverge from traditional rigid robotics, offering unique advantages in adaptability, safety, and human-robot interaction. In some cases, soft robots can be powered by biohybrid actuators and the design process of these systems is far from straightforward. We analyse here two algorithms that may assist the design of these systems, namely, NEAT (NeuroEvolution of Augmented Topologies) and HyperNEAT (Hypercube-based NeuroEvolution of Augmented Topologies). These algorithms exploit the evolution of the structure of actuators encoded through neural networks. To evaluate these algorithms, we compare them with a similar approach using the Age Fitness Pareto Optimization (AFPO) algorithm, with a focus on assessing the maximum displacement achieved by the discovered biohybrid morphologies. Additionally, we investigate the effects of optimization against both the volume of these morphologies and the distance they can cover. To further accelerate the computational process, the proposed methodology is implemented in a client-server setting; so, the most demanding calculations can be executed on specialized and efficient hardware. The results indicate that the HyperNEAT-based approach excels in identifying morphologies with minimal volumes that still achieve satisfactory displacement targets.

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arXiv2024

On complexity of colloid cellular automata

The colloid cellular automata do not imitate the physical structure of colloids but are governed by logical functions derived from the colloids. We analyse the space-time complexity of Boolean circuits derived from the electrical responses of colloids: ZnO (zinc oxide, an inorganic compound also known as calamine or zinc white, which naturally occurs as the mineral zincite), proteinoids (microspheres and crystals of thermal abiotic proteins), and combinations thereof to electrical stimulation. To extract Boolean circuits from colloids, we send all possible configurations of two-, four-, and eight-bit binary strings, encoded as electrical potential values, to the colloids, record their responses, and thereby infer the Boolean functions they implement. We map the discovered functions onto the cell-state transition rules of cellular automata (arrays of binary state machines that update their states synchronously according to the same rule) -- the colloid cellular automata. We then analyse the phenomenology of the space-time configurations of the automata and evaluate their complexity using measures such as compressibility, Shannon entropy, Simpson diversity, and expressivity. A hierarchy of phenomenological and measurable space-time complexity is constructed.

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arXiv2023

Logical circuits in colloids

Colloid-based computing devices offer remarkable fault tolerance and adaptability to varying environmental conditions due to their amorphous structure. An intriguing observation is that a colloidal suspension of ZnO nanoparticles in DMSO exhibits reconfiguration when exposed to electrical stimulation and produces spikes of electrical potential in response. This study presents a novel laboratory prototype of a ZnO colloidal computer, showcasing its capability to implement various Boolean functions featuring two, four, and eight inputs. During our experiments, we input binary strings into the colloid mixture, where a logical ``True" state is represented by an impulse of an electrical potential. In contrast, the absence of the electrical impulse denotes a logical ``False" state. The electrical responses of the colloid mixture are recorded, allowing us to extract truth tables from the recordings. Through this methodological approach, we demonstrate the successful implementation of a wide range of logical functions using colloidal mixtures. We provide detailed distributions of the logical functions discovered and offer speculation on the potential impacts of our findings on future and emerging unconventional computing technologies. This research highlights the exciting possibilities of colloid-based computing and paves the way for further advancements.

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arXiv2022

Reactive fungal insoles

Mycelium bound composites are promising materials for a diverse range of applications including wearables and building elements. Their functionality surpasses some of the capabilities of traditionally passive materials, such as synthetic fibres, reconstituted cellulose fibres and natural fibres. Thereby, creating novel propositions including augmented functionality (sensory) and aesthetic (personal fashion). Biomaterials can offer multiple modal sensing capability such as mechanical loading (compressive and tensile) and moisture content. To assess the sensing potential of fungal insoles we undertook laboratory experiments on electrical response of bespoke insoles made from capillary matting colonised with oyster fungi Pleurotus ostreatus to compressive stress which mimics human loading when standing and walking. We have shown changes in electrical activity with compressive loading. The results advance the development of intelligent sensing insoles which are a building block towards more generic reactive fungal wearables. Using FitzhHugh-Nagumo model we numerically illustrated how excitation wave-fronts behave in a mycelium network colonising an insole and shown that it may be possible to discern pressure points from the mycelium electrical activity.

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arXiv2021

Logics in fungal mycelium networks

The living mycelium networks are capable of efficient sensorial fusion over very large areas and distributed decision making. The information processing in the mycelium networks is implemented via propagation of electrical and chemical signals en pair with morphological changes in the mycelium structure. These information processing mechanisms are manifested in experimental laboratory findings that show that the mycelium networks exhibit rich dynamics of neuron-like spiking behaviour and a wide range of non-linear electrical properties. On an example of a single real colony of \emph{Aspergillus niger}, we demonstrate that the non-linear transformation of electrical signals and trains of extracellular voltage spikes can be used to implement logical gates and circuits. The approaches adopted include numerical modelling of excitation propagation on the mycelium network, representation of the mycelium network as a resistive and capacitive (RC) network and an experimental laboratory study on mining logical circuits in mycelium bound composites.

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arXiv2021

Fungal electronics

Fungal electronics is a family of living electronic devices made of mycelium bound composites or pure mycelium. Fungal electronic devices are capable of changing their impedance and generating spikes of electrical potential in response to external control parameters. Fungal electronics can be embedded into fungal materials and wearables or used as stand alone sensing and computing devices.

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arXiv2021

On electrical gates on fungal colony

Mycelium networks are promising substrates for designing unconventional computing devices providing rich topologies and geometries where signals propagate and interact. Fulfilling our long-term objectives of prototyping electrical analog computers from living mycelium networks, including networks hybridised with nanoparticles, we explore the possibility of implementing Boolean logical gates based on electrical properties of fungal colonies. We converted a 3D image-data stack of \emph{Aspergillus niger} fungal colony to an Euclidean graph and modelled the colony as resistive and capacitive (RC) networks, where electrical parameters of edges were functions of the edges' lengths. We found that {\sc and}, {\sc or} and {\sc and-not} gates are implementable in RC networks derived from the geometrical structure of the real fungal colony.

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arXiv2020

Evolving Nano Particle Cancer Treatments with Multiple Particle Types

Evolutionary algorithms have long been used for optimization problems where the appropriate size of solutions is unclear a priori. The applicability of this methodology is here investigated on the problem of designing a nano-particle (NP) based drug delivery system targeting cancer tumours. Utilizing a treatment comprising of multiple types of NPs is expected to be more effective due to the higher complexity of the treatment. This paper begins by utilizing the well-known NK model to explore the effects of fitness landscape ruggedness upon the evolution of genome length and, hence, solution complexity. The size of a novel sequence and the absence or presence of sequence deletion are also considered. Results show that whilst landscape ruggedness can alter the dynamics of the process, it does not hinder the evolution of genome length. These findings are then explored within the aforementioned real-world problem. In the first known instance, treatments with multiple types of NPs are used simultaneously, via an agent-based open source physics-based cell simulator. The results suggest that utilizing multiple types of NPs is more efficient when the solution space is explored with the evolutionary techniques under a predefined computational budget.

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arXiv2020

Utilizing Differential Evolution into optimizing targeted cancer treatments

Working towards the development of an evolvable cancer treatment simulator, the investigation of Differential Evolution was considered, motivated by the high efficiency of variations of this technique in real-valued problems. A basic DE algorithm, namely "DE/rand/1" was used to optimize the simulated design of a targeted drug delivery system for tumor treatment on PhysiCell simulator. The suggested approach proved to be more efficient than a standard genetic algorithm, which was not able to escape local minima after a predefined number of generations. The key attribute of DE that enables it to outperform standard EAs, is the fact that it keeps the diversity of the population high, throughout all the generations. This work will be incorporated with ongoing research in a more wide applicability platform that will design, develop and evaluate targeted drug delivery systems aiming cancer tumours.

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arXiv2020

Novelty search employed into the development of cancer treatment simulations

Conventional optimization methodologies may be hindered when the automated search is stuck into local optima because of a deceptive objective function landscape. Consequently, open ended search methodologies, such as novelty search, have been proposed to tackle this issue. Overlooking the objective, while putting pressure into discovering novel solutions may lead to better solutions in practical problems. Novelty search was employed here to optimize the simulated design of a targeted drug delivery system for tumor treatment under the PhysiCell simulator. A hybrid objective equation was used containing both the actual objective of an effective tumour treatment and the novelty measure of the possible solutions. Different weights of the two components of the hybrid equation were investigated to unveil the significance of each one.

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arXiv2020

Computational universality of fungal sandpile automata

Hyphae within the mycelia of the ascomycetous fungi are compartmentalised by septa. Each septum has a pore that allows for inter-compartmental and inter-hyphal streaming of cytosol and even organelles. The compartments, however, have special organelles, Woronin bodies, that can plug the pores. When the pores are blocked, no flow of cytoplasm takes place. Inspired by the controllable compartmentalisation within the mycelium of the ascomycetous fungi we designed two-dimensional fungal automata. A fungal automaton is a cellular automaton where communication between neighbouring cells can be blocked on demand. We demonstrate computational universality of the fungal automata by implementing sandpile cellular automata circuits there. We reduce the Monotone Circuit Value Problem to the Fungal Automaton Prediction Problem. We construct families of wires, cross-overs and gates to prove that the fungal automata are P-complete.

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arXiv2020

Fungal Automata

We study a cellular automaton (CA) model of information dynamics on a single hypha of a fungal mycelium. Such a filament is divided in compartments (here also called cells) by septa. These septa are invaginations of the cell wall and their pores allow for flow of cytoplasm between compartments and hyphae. The septal pores of the fungal phylum of the Ascomycota can be closed by organelles called Woronin bodies. Septal closure is increased when the septa become older and when exposed to stress conditions. Thus, Woronin bodies act as informational flow valves. The one dimensional fungal automata is a binary state ternary neighbourhood CA, where every compartment follows one of the elementary cellular automata (ECA) rules if its pores are open and either remains in state `0' (first species of fungal automata) or its previous state (second species of fungal automata) if its pores are closed. The Woronin bodies closing the pores are also governed by ECA rules. We analyse a structure of the composition space of cell-state transition and pore-state transitions rules, complexity of fungal automata with just few Woronin bodies, and exemplify several important local events in the automaton dynamics.

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