arXiv subjects

Michail-Antisthenis Tsompanas

Publications and source records attributed to Michail-Antisthenis Tsompanas.

26 records · Page 2Linked to original sources

arXiv2020

Unconventional Bio-Inspired Model for Design of Logic Gates

During the last years, a well studied biological substrate, namely Physarum polycephalum, has been proven efficient on finding appropriate and efficient solutions in hard to solve complex mathematical problems. The plasmodium of P. polycephalum is a single-cell that serves as a prosperous bio-computational example. Consequently, it has been successfully utilized in the past to solve a variety of path problems in graphs and combinatorial problems. In this work, this interesting behaviour is mimicked by a robust unconventional computational model, drawing inspiration from the notion of Cellular and Learning Automata. Namely, we employ principles of Cellular Automata (CAs) enriched with learning capabilities to develop a robust computational model, able of modelling appropriately the aforementioned biological substrate and, thus, capturing its computational capabilities. CAs are very efficient in modelling biological systems and solving scientific problems, owing to their ability of incarnating essential properties of a system where global behaviour arises as an effect of simple components, interacting locally. The resulting computational tool, after combining CAs with learning capabilities, should be appropriate for modelling the behaviour of living organisms. Thus, the inherent abilities and computational characteristics of the proposed bio-inspired model are stressed towards the experimental verification of Physarum's ability to model Logic Gates, while trying to find minimal paths in properly configured mazes with food sources. The presented simulation results for various Logic Gates are found in good agreement, both qualitatively and quantitatively, with the corresponding experimental results, proving the efficacy of this unconventional bio-inspired model and providing useful insights for its enhanced usage in various computing applications.

cs.ET↗

arXiv2019

Haploid-Diploid Evolution: Nature's Memetic Algorithm

This paper uses a recent explanation for the fundamental haploid-diploid lifecycle of eukaryotic organisms to present a new memetic algorithm that differs from all previous known work using diploid representations. A form of the Baldwin effect has been identified as inherent to the evolutionary mechanisms of eukaryotes and a simplified version is presented here which maintains such behaviour. Using a well-known abstract tuneable model, it is shown that varying fitness landscape ruggedness varies the benefit of haploid-diploid algorithms. Moreover, the methodology is applied to optimise the targeted delivery of a therapeutic compound utilizing nano-particles to cancerous tumour cells with the multicellular simulator PhysiCell.

cs.NE↗

arXiv2019

Liquid Marble Photosensor

A liquid marble is a liquid droplet coated by a hydrophobic power. The liquid marble does not wet adjacent surfaces and therefore can be manipulated as a dry soft body. A Belousov-Zhabotinsky (BZ) reaction is an oscillatory chemical reaction exhibiting waves of oxidation. We demonstrate how to make a photo-sensor from BZ medium liquid marbles. We insert electrodes into a liquid marble, prepared from BZ solution and coated with polyethylene powder. The electrodes record a potential difference which oscillates due to oxidation wave-fronts crossing the electrodes. When the BZ marble is illuminated by a light source, the oxidation wave-fronts are hindered and, thus, the electrical potential recorded ceases to oscillate. We characterise several types of responses of BZ marble photosensors to various stimuli, and provide explanations of the recorded activity. BZ liquid marble photosensors may find applications in the fields of liquid electronics, soft robotics and unconventional computing.

cs.ET↗

arXiv2019

Belousov-Zhabotinsky liquid marbles in robot control

We show how to control the movement of a wheeled robot using on-board liquid marbles made of Belousov-Zhabotinsky solution droplets coated with polyethylene powder. Two stainless steel, iridium coated electrodes were inserted in a marble and the electrical potential recorded was used to control the robot's motor. We stimulated the marble with a laser beam. It responded to the stimulation by pronounced changes in the electrical potential output. The electrical output was detected by robot. The robot was changing its trajectory in response to the stimulation. The results open new horizons for applications for oscillatory chemical reactions in robotics.

cs.RO↗

arXiv2018

Excitable London: Street map analysis with Oregonator model

We explore geometry of London's streets using computational mode of an excitable chemical system, Belousov-Zhabotinsky (BZ) medium. We virtually fill in the streets with a BZ medium and study propagation of excitation waves for a range of excitability parameters, gradual transition from excitable to sub-excitable to non-excitable. We demonstrate a pruning strategy adopted by the medium with decreasing excitability when wider and ballistically appropriate streets are selected. We explain mechanics of streets selection and pruning. The results of the paper will be used in future studies of studying dynamics of cities with living excitable substrates.

cs.ET↗

arXiv2018

Modelling Microbial Fuel Cells using lattice Boltzmann methods

An accurate modelling of bio-electrochemical processes that govern Microbial Fuel Cells (MFCs) and mapping their behaviour according to several parameters will enhance the development of MFC technology and enable their successful implementation in well defined applications. The geometry of the electrodes is among key parameters determining efficiency of MFCs due to the formation of a biofilm of anodophilic bacteria on the anode electrode, which is a decisive factor for the functionality of the device. We simulate the bio-electrochemical processes in an MFC while taking into account the geometry of the electrodes. Namely, lattice Boltzmann methods are used to simulate the fluid dynamics and the advection-diffusion phenomena in the anode compartment. The model is verified on voltage and current outputs of a single MFC derived from laboratory experiments under continuous flow.

cs.CE↗

arXiv2017

Towards implementation of Cellular Automata in Microbial Fuel Cells

The Microbial Fuel Cell (MFC) is a bio-electrochemical transducer converting waste products into electricity using microbial communities. Cellular Automaton (CA) is a uniform array of finite-state machines that update their states in discrete time depending on states of their closest neighbors by the same rule. Arrays of MFCs could, in principle, act as massive-parallel computing devices with local connectivity between elementary processors. We provide a theoretical design of such a parallel processor by implementing CA in MFCs. We have chosen Conway's Game of Life as the 'benchmark' CA because this is the most popular CA which also exhibits an enormously rich spectrum of patterns. Each cell of the Game of Life CA is realized using two MFCs. The MFCs are linked electrically and hydraulically. The model is verified via simulation of an electrical circuit demonstrating equivalent behaviors. The design is a first step towards future implementations of fully autonomous biological computing devices with massive parallelism. The energy independence of such devices counteracts their somewhat slow transitions - compared to silicon circuitry - between the different states during computation.

cs.ET↗

arXiv2017

Cellular non-nonlinear network model of microbial fuel cell

A cellular non-linear network (CNN) is a uniform regular array of locally connected continuous-state machines, or nodes, which update their states simultaneously in discrete time. A microbial fuel cell (MFC) is an electro-chemical reactor using the metabolism of bacteria to drive an electrical current. In a CNN model of the MFC, each node takes a vector of states which represent geometrical characteristics of the cell, like the electrodes or impermeable borders, and quantify measurable properties like bacterial population, charges produced and hydrogen ions concentrations. The model allows the study of integral reaction of the MFC, including temporal outputs, to spatial disturbances of the bacterial population and supply of nutrients. The model can also be used to evaluate inhomogeneous configurations of bacterial populations attached on the electrode biofilms.

nlin.CG↗