arXiv subjects

Mingkun Xu

Publications and source records attributed to Mingkun Xu.

At least 37 records · Page 2Linked to original sources

arXiv2026

Beyond Classification Accuracy: Neural-MedBench and the Need for Deeper Reasoning Benchmarks

Recent advances in vision-language models (VLMs) have achieved remarkable performance on standard medical benchmarks, yet their true clinical reasoning ability remains unclear. Existing datasets predominantly emphasize classification accuracy, creating an evaluation illusion in which models appear proficient while still failing at high-stakes diagnostic reasoning. We introduce Neural-MedBench, a compact yet reasoning-intensive benchmark specifically designed to probe the limits of multimodal clinical reasoning in neurology. Neural-MedBench integrates multi-sequence MRI scans, structured electronic health records, and clinical notes, and encompasses three core task families: differential diagnosis, lesion recognition, and rationale generation. To ensure reliable evaluation, we develop a hybrid scoring pipeline that combines LLM-based graders, clinician validation, and semantic similarity metrics. Through systematic evaluation of state-of-the-art VLMs, including GPT-4o, Claude-4, and MedGemma, we observe a sharp performance drop compared to conventional datasets. Error analysis shows that reasoning failures, rather than perceptual errors, dominate model shortcomings. Our findings highlight the necessity of a Two-Axis Evaluation Framework: breadth-oriented large datasets for statistical generalization, and depth-oriented, compact benchmarks such as Neural-MedBench for reasoning fidelity. We release Neural-MedBench at https://neuromedbench.github.io/ as an open and extensible diagnostic testbed, which guides the expansion of future benchmarks and enables rigorous yet cost-effective assessment of clinically trustworthy AI.

cs.CV↗

arXiv2026

MorphSNN: Adaptive Graph Diffusion and Structural Plasticity for Spiking Neural Networks

Spiking Neural Networks (SNNs) currently face a critical bottleneck: while individual neurons exhibit dynamic biological properties, their macro-scopic architectures remain confined within conventional connectivity patterns that are static and hierarchical. This discrepancy between neuron-level dynamics and network-level fixed connectivity eliminates critical brain-like lateral interactions, limiting adaptability in changing environments. To address this, we propose MorphSNN, a backbone framework inspired by biological non-synaptic diffusion and structural plasticity. Specifically, we introduce a Graph Diffusion (GD)mechanism to facilitate efficient undirected signal propagation, complementing the feedforward hierarchy. Furthermore, it incorporates a Spatio-Temporal Structural Plasticity (STSP) mechanism, endowing the network with the capability for instance-specific, dynamic topological reorganization, thereby overcoming the limitations of fixed topologies. Experiments demonstrate that MorphSNN achieves state-of-the-art accuracy on static and neuromorphic datasets; for instance, it reaches 83.35% accuracy on N-Caltech101 with only 5 timesteps. More importantly, its self-evolving topology functions as an intrinsic distribution fingerprint, enabling superior Out-of- Distribution (OOD) detection without auxiliary training. The code is available at anonymous.4open.science/r/MorphSNN-B0BC.

cs.NE↗

arXiv2026

MM-NeuroOnco: A Multimodal Benchmark and Instruction Dataset for MRI-Based Brain Tumor Diagnosis

Accurate brain tumor diagnosis requires models to not only detect lesions but also generate clinically interpretable reasoning grounded in imaging manifestations, yet existing public datasets remain limited in annotation richness and diagnostic semantics. To bridge this gap, we introduce MM-NeuroOnco, a large-scale multimodal benchmark and instruction-tuning dataset for brain tumor MRI understanding, consisting of 24,726 MRI slices from 20 data sources paired with approximately 200,000 semantically enriched multimodal instructions spanning diverse tumor subtypes and imaging modalities. To mitigate the scarcity and high cost of diagnostic semantic annotations, we develop a multi-model collaborative pipeline for automated medical information completion and quality control, enabling the generation of diagnosis-related semantics beyond mask-only annotations. Building upon this dataset, we further construct MM-NeuroOnco-Bench, a manually annotated evaluation benchmark with a rejection-aware setting to reduce biases inherent in closed-ended question formats. Evaluation across ten representative models shows that even the strongest baseline, Gemini 3 Flash, achieves only 41.88% accuracy on diagnosis-related questions, highlighting the substantial challenges of multimodal brain tumor diagnostic understanding. Leveraging MM-NeuroOnco, we further propose NeuroOnco-GPT, which achieves a 27% absolute accuracy improvement on diagnostic questions following fine-tuning. This result demonstrates the effectiveness of our dataset and benchmark in advancing clinically grounded multimodal diagnostic reasoning. Code and dataset are publicly available at: https://github.com/gfnnnb/MM-NeuroOnco

cs.CV↗

arXiv2026

BMAM: Brain-inspired Multi-Agent Memory Framework

Language-model-based agents operating over extended interaction horizons face persistent challenges in preserving temporally grounded information and maintaining behavioral consistency across sessions, a failure mode we term soul erosion. We present BMAM (Brain-inspired Multi-Agent Memory), a general-purpose memory architecture that models agent memory as a set of functionally specialized subsystems rather than a single unstructured store. Inspired by cognitive memory systems, BMAM decomposes memory into episodic, semantic, salience-aware, and control-oriented components that operate at complementary time scales. To support long-horizon reasoning, BMAM organizes episodic memories along explicit timelines and retrieves evidence by fusing multiple complementary signals. Experiments on the LoCoMo benchmark show that BMAM achieves 78.45 percent accuracy under the standard long-horizon evaluation setting, and ablation analyses confirm that the hippocampus-inspired episodic memory subsystem plays a critical role in temporal reasoning.

cs.CL↗

arXiv2026

MMPG: MoE-based Adaptive Multi-Perspective Graph Fusion for Protein Representation Learning

Graph Neural Networks (GNNs) have been widely adopted for Protein Representation Learning (PRL), as residue interaction networks can be naturally represented as graphs. Current GNN-based PRL methods typically rely on single-perspective graph construction strategies, which capture partial properties of residue interactions, resulting in incomplete protein representations. To address this limitation, we propose MMPG, a framework that constructs protein graphs from multiple perspectives and adaptively fuses them via Mixture of Experts (MoE) for PRL. MMPG constructs graphs from physical, chemical, and geometric perspectives to characterize different properties of residue interactions. To capture both perspective-specific features and their synergies, we develop an MoE module, which dynamically routes perspectives to specialized experts, where experts learn intrinsic features and cross-perspective interactions. We quantitatively verify that MoE automatically specializes experts in modeling distinct levels of interaction from individual representations, to pairwise inter-perspective synergies, and ultimately to a global consensus across all perspectives. Through integrating this multi-level information, MMPG produces superior protein representations and achieves advanced performance on four different downstream protein tasks.

cs.AI↗

arXiv2025

CogniSNN: An Exploration to Random Graph Architecture based Spiking Neural Networks with Enhanced Depth-Scalability and Path-Plasticity

Currently, most spiking neural networks (SNNs) still mimic the chain-like hierarchical architecture in traditional artificial neural networks (ANNs). This method significantly differs from random connections between neurons found in biological brains, limiting the ability to model the evolving mechanisms of neural pathways in biological neural systems, particularly in terms of dynamic depth-scalability and adaptive path-plasticity. This paper develops a new modeling paradigm for SNNs with random graph architecture (RGA), termed Cognition-aware SNN (CogniSNN). Furthermore, we model the depth-scalability and path-plasticity in CogniSNN by introducing a modified spiking residual neural node (ResNode) to counteract network degradation in deeper graph pathways, as well as a critical path-based algorithm that enables CogniSNN to perform path reusability on new tasks leveraging the features of the data and the RGA learned in old tasks. Experiments show that the performance of CogniSNN with redesigned ResNode is comparable, even superior, to current state-of-the-art SNNs on neuromorphic datasets. The critical path-based approach effectively achieves path reuse capability while maintaining expected performance in learning new tasks that are similar to or distinct from the old ones. This study showcases the potential of RGA-based SNNs and paves a new path for modeling the fusion of computational neuroscience and deep intelligent agents. The code is available at github.com/Yongsheng124/CogniSNN.

cs.NE↗

arXiv2025

CogniSNN: Enabling Neuron-Expandability, Pathway-Reusability, and Dynamic-Configurability with Random Graph Architectures in Spiking Neural Networks

Spiking neural networks (SNNs), regarded as the third generation of artificial neural networks, are expected to bridge the gap between artificial intelligence and computational neuroscience. However, most mainstream SNN research directly adopts the rigid, chain-like hierarchical architecture of traditional artificial neural networks (ANNs), ignoring key structural characteristics of the brain. Biological neurons are stochastically interconnected, forming complex neural pathways that exhibit Neuron-Expandability, Pathway-Reusability, and Dynamic-Configurability. In this paper, we introduce a new SNN paradigm, named Cognition-aware SNN (CogniSNN), by incorporating Random Graph Architecture (RGA). Furthermore, we address the issues of network degradation and dimensional mismatch in deep pathways by introducing an improved pure spiking residual mechanism alongside an adaptive pooling strategy. Then, we design a Key Pathway-based Learning without Forgetting (KP-LwF) approach, which selectively reuses critical neural pathways while retaining historical knowledge, enabling efficient multi-task transfer. Finally, we propose a Dynamic Growth Learning (DGL) algorithm that allows neurons and synapses to grow dynamically along the internal temporal dimension. Extensive experiments demonstrate that CogniSNN achieves performance comparable to, or even surpassing, current state-of-the-art SNNs on neuromorphic datasets and Tiny-ImageNet. The Pathway-Reusability enhances the network's continuous learning capability across different scenarios, while the dynamic growth algorithm improves robustness against interference and mitigates the fixed-timestep constraints during neuromorphic chip deployment. This work demonstrates the potential of SNNs with random graph structures in advancing brain-inspired intelligence and lays the foundation for their practical application on neuromorphic hardware.

cs.NE↗

arXiv2025

Self-Calibrated Consistency can Fight Back for Adversarial Robustness in Vision-Language Models

Pre-trained vision-language models (VLMs) such as CLIP have demonstrated strong zero-shot capabilities across diverse domains, yet remain highly vulnerable to adversarial perturbations that disrupt image-text alignment and compromise reliability. Existing defenses typically rely on adversarial fine-tuning with labeled data, limiting their applicability in zero-shot settings. In this work, we identify two key weaknesses of current CLIP adversarial attacks -- lack of semantic guidance and vulnerability to view variations -- collectively termed semantic and viewpoint fragility. To address these challenges, we propose Self-Calibrated Consistency (SCC), an effective test-time defense. SCC consists of two complementary modules: Semantic consistency, which leverages soft pseudo-labels from counterattack warm-up and multi-view predictions to regularize cross-modal alignment and separate the target embedding from confusable negatives; and Spatial consistency, aligning perturbed visual predictions via augmented views to stabilize inference under adversarial perturbations. Together, these modules form a plug-and-play inference strategy. Extensive experiments on 22 benchmarks under diverse attack settings show that SCC consistently improves the zero-shot robustness of CLIP while maintaining accuracy, and can be seamlessly integrated with other VLMs for further gains. These findings highlight the great potential of establishing an adversarially robust paradigm from CLIP, with implications extending to broader vision-language domains such as BioMedCLIP.

cs.CV↗

arXiv2025

Modest-Align: Data-Efficient Alignment for Vision-Language Models

Cross-modal alignment aims to map heterogeneous modalities into a shared latent space, as exemplified by models like CLIP, which benefit from large-scale image-text pretraining for strong recognition capabilities. However, when operating in resource-constrained settings with limited or low-quality data, these models often suffer from overconfidence and degraded performance due to the prevalence of ambiguous or weakly correlated image-text pairs. Current contrastive learning approaches, which rely on single positive pairs, further exacerbate this issue by reinforcing overconfidence on uncertain samples. To address these challenges, we propose Modest-Align, a lightweight alignment framework designed for robustness and efficiency. Our approach leverages two complementary strategies -- Random Perturbation, which introduces controlled noise to simulate uncertainty, and Embedding Smoothing, which calibrates similarity distributions in the embedding space. These mechanisms collectively reduce overconfidence and improve performance on noisy or weakly aligned samples. Extensive experiments across multiple benchmark datasets demonstrate that Modest-Align outperforms state-of-the-art methods in retrieval tasks, achieving competitive results with over 100x less training data and 600x less GPU time than CLIP. Our method offers a practical and scalable solution for cross-modal alignment in real-world, low-resource scenarios.

cs.CV↗

arXiv2025

G3Flow: Generative 3D Semantic Flow for Pose-aware and Generalizable Object Manipulation

Recent advances in imitation learning for 3D robotic manipulation have shown promising results with diffusion-based policies. However, achieving human-level dexterity requires seamless integration of geometric precision and semantic understanding. We present G3Flow, a novel framework that constructs real-time semantic flow, a dynamic, object-centric 3D semantic representation by leveraging foundation models. Our approach uniquely combines 3D generative models for digital twin creation, vision foundation models for semantic feature extraction, and robust pose tracking for continuous semantic flow updates. This integration enables complete semantic understanding even under occlusions while eliminating manual annotation requirements. By incorporating semantic flow into diffusion policies, we demonstrate significant improvements in both terminal-constrained manipulation and cross-object generalization. Extensive experiments across five simulation tasks show that G3Flow consistently outperforms existing approaches, achieving up to 68.3% and 50.1% average success rates on terminal-constrained manipulation and cross-object generalization tasks respectively. Our results demonstrate the effectiveness of G3Flow in enhancing real-time dynamic semantic feature understanding for robotic manipulation policies.

cs.RO↗

arXiv2025

Efficient ANN-SNN Conversion with Error Compensation Learning

Artificial neural networks (ANNs) have demonstrated outstanding performance in numerous tasks, but deployment in resource-constrained environments remains a challenge due to their high computational and memory requirements. Spiking neural networks (SNNs) operate through discrete spike events and offer superior energy efficiency, providing a bio-inspired alternative. However, current ANN-to-SNN conversion often results in significant accuracy loss and increased inference time due to conversion errors such as clipping, quantization, and uneven activation. This paper proposes a novel ANN-to-SNN conversion framework based on error compensation learning. We introduce a learnable threshold clipping function, dual-threshold neurons, and an optimized membrane potential initialization strategy to mitigate the conversion error. Together, these techniques address the clipping error through adaptive thresholds, dynamically reduce the quantization error through dual-threshold neurons, and minimize the non-uniformity error by effectively managing the membrane potential. Experimental results on CIFAR-10, CIFAR-100, ImageNet datasets show that our method achieves high-precision and ultra-low latency among existing conversion methods. Using only two time steps, our method significantly reduces the inference time while maintains competitive accuracy of 94.75% on CIFAR-10 dataset under ResNet-18 structure. This research promotes the practical application of SNNs on low-power hardware, making efficient real-time processing possible.

cs.LG↗

arXiv2025

RoboTwin: Dual-Arm Robot Benchmark with Generative Digital Twins

In the rapidly advancing field of robotics, dual-arm coordination and complex object manipulation are essential capabilities for developing advanced autonomous systems. However, the scarcity of diverse, high-quality demonstration data and real-world-aligned evaluation benchmarks severely limits such development. To address this, we introduce RoboTwin, a generative digital twin framework that uses 3D generative foundation models and large language models to produce diverse expert datasets and provide a real-world-aligned evaluation platform for dual-arm robotic tasks. Specifically, RoboTwin creates varied digital twins of objects from single 2D images, generating realistic and interactive scenarios. It also introduces a spatial relation-aware code generation framework that combines object annotations with large language models to break down tasks, determine spatial constraints, and generate precise robotic movement code. Our framework offers a comprehensive benchmark with both simulated and real-world data, enabling standardized evaluation and better alignment between simulated training and real-world performance. We validated our approach using the open-source COBOT Magic Robot platform. Policies pre-trained on RoboTwin-generated data and fine-tuned with limited real-world samples demonstrate significant potential for enhancing dual-arm robotic manipulation systems by improving success rates by over 70% for single-arm tasks and over 40% for dual-arm tasks compared to models trained solely on real-world data.

cs.RO↗

arXiv2025

An Integrated AI-Enabled System Using One Class Twin Cross Learning (OCT-X) for Early Gastric Cancer Detection

Early detection of gastric cancer, a leading cause of cancer-related mortality worldwide, remains hampered by the limitations of current diagnostic technologies, leading to high rates of misdiagnosis and missed diagnoses. To address these challenges, we propose an integrated system that synergizes advanced hardware and software technologies to balance speed-accuracy. Our study introduces the One Class Twin Cross Learning (OCT-X) algorithm. Leveraging a novel fast double-threshold grid search strategy (FDT-GS) and a patch-based deep fully convolutional network, OCT-X maximizes diagnostic accuracy through real-time data processing and seamless lesion surveillance. The hardware component includes an all-in-one point-of-care testing (POCT) device with high-resolution imaging sensors, real-time data processing, and wireless connectivity, facilitated by the NI CompactDAQ and LabVIEW software. Our integrated system achieved an unprecedented diagnostic accuracy of 99.70%, significantly outperforming existing models by up to 4.47%, and demonstrated a 10% improvement in multirate adaptability. These findings underscore the potential of OCT-X as well as the integrated system in clinical diagnostics, offering a path toward more accurate, efficient, and less invasive early gastric cancer detection. Future research will explore broader applications, further advancing oncological diagnostics. Code is available at https://github.com/liu37972/Multirate-Location-on-OCT-X-Learning.git.

eess.IV↗

arXiv2025

Understanding the Functional Roles of Modelling Components in Spiking Neural Networks

Spiking neural networks (SNNs), inspired by the neural circuits of the brain, are promising in achieving high computational efficiency with biological fidelity. Nevertheless, it is quite difficult to optimize SNNs because the functional roles of their modelling components remain unclear. By designing and evaluating several variants of the classic model, we systematically investigate the functional roles of key modelling components, leakage, reset, and recurrence, in leaky integrate-and-fire (LIF) based SNNs. Through extensive experiments, we demonstrate how these components influence the accuracy, generalization, and robustness of SNNs. Specifically, we find that the leakage plays a crucial role in balancing memory retention and robustness, the reset mechanism is essential for uninterrupted temporal processing and computational efficiency, and the recurrence enriches the capability to model complex dynamics at a cost of robustness degradation. With these interesting observations, we provide optimization suggestions for enhancing the performance of SNNs in different scenarios. This work deepens the understanding of how SNNs work, which offers valuable guidance for the development of more effective and robust neuromorphic models.

cs.NE↗

arXiv2025

Interpretable Droplet Digital PCR Assay for Trustworthy Molecular Diagnostics

Accurate molecular quantification is essential for advancing research and diagnostics in fields such as infectious diseases, cancer biology, and genetic disorders. Droplet digital PCR (ddPCR) has emerged as a gold standard for achieving absolute quantification. While computational ddPCR technologies have advanced significantly, achieving automatic interpretation and consistent adaptability across diverse operational environments remains a challenge. To address these limitations, we introduce the intelligent interpretable droplet digital PCR (I2ddPCR) assay, a comprehensive framework integrating front-end predictive models (for droplet segmentation and classification) with GPT-4o multimodal large language model (MLLM, for context-aware explanations and recommendations) to automate and enhance ddPCR image analysis. This approach surpasses the state-of-the-art models, affording 99.05% accuracy in processing complex ddPCR images containing over 300 droplets per image with varying signal-to-noise ratios (SNRs). By combining specialized neural networks and large language models, the I2ddPCR assay offers a robust and adaptable solution for absolute molecular quantification, achieving a sensitivity capable of detecting low-abundance targets as low as 90.32 copies/μL. Furthermore, it improves model's transparency through detailed explanation and troubleshooting guidance, empowering users to make informed decisions. This innovative framework has the potential to benefit molecular diagnostics, disease research, and clinical applications, especially in resource-constrained settings.

q-bio.QM↗

arXiv2024

Multi-View Incremental Learning with Structured Hebbian Plasticity for Enhanced Fusion Efficiency

The rapid evolution of multimedia technology has revolutionized human perception, paving the way for multi-view learning. However, traditional multi-view learning approaches are tailored for scenarios with fixed data views, falling short of emulating the intricate cognitive procedures of the human brain processing signals sequentially. Our cerebral architecture seamlessly integrates sequential data through intricate feed-forward and feedback mechanisms. In stark contrast, traditional methods struggle to generalize effectively when confronted with data spanning diverse domains, highlighting the need for innovative strategies that can mimic the brain's adaptability and dynamic integration capabilities. In this paper, we propose a bio-neurologically inspired multi-view incremental framework named MVIL aimed at emulating the brain's fine-grained fusion of sequentially arriving views. MVIL lies two fundamental modules: structured Hebbian plasticity and synaptic partition learning. The structured Hebbian plasticity reshapes the structure of weights to express the high correlation between view representations, facilitating a fine-grained fusion of view representations. Moreover, synaptic partition learning is efficient in alleviating drastic changes in weights and also retaining old knowledge by inhibiting partial synapses. These modules bionically play a central role in reinforcing crucial associations between newly acquired information and existing knowledge repositories, thereby enhancing the network's capacity for generalization. Experimental results on six benchmark datasets show MVIL's effectiveness over state-of-the-art methods.

cs.CV↗

arXiv2024

Enhancing Diagnostic Precision in Gastric Bleeding through Automated Lesion Segmentation: A Deep DuS-KFCM Approach

Timely and precise classification and segmentation of gastric bleeding in endoscopic imagery are pivotal for the rapid diagnosis and intervention of gastric complications, which is critical in life-saving medical procedures. Traditional methods grapple with the challenge posed by the indistinguishable intensity values of bleeding tissues adjacent to other gastric structures. Our study seeks to revolutionize this domain by introducing a novel deep learning model, the Dual Spatial Kernelized Constrained Fuzzy C-Means (Deep DuS-KFCM) clustering algorithm. This Hybrid Neuro-Fuzzy system synergizes Neural Networks with Fuzzy Logic to offer a highly precise and efficient identification of bleeding regions. Implementing a two-fold coarse-to-fine strategy for segmentation, this model initially employs the Spatial Kernelized Fuzzy C-Means (SKFCM) algorithm enhanced with spatial intensity profiles and subsequently harnesses the state-of-the-art DeepLabv3+ with ResNet50 architecture to refine the segmentation output. Through extensive experiments across mainstream gastric bleeding and red spots datasets, our Deep DuS-KFCM model demonstrated unprecedented accuracy rates of 87.95%, coupled with a specificity of 96.33%, outperforming contemporary segmentation methods. The findings underscore the model's robustness against noise and its outstanding segmentation capabilities, particularly for identifying subtle bleeding symptoms, thereby presenting a significant leap forward in medical image processing.

eess.IV↗

arXiv2024

Brain-inspired continual pre-trained learner via silent synaptic consolidation

Pre-trained models have demonstrated impressive generalization capabilities, yet they remain vulnerable to catastrophic forgetting when incrementally trained on new tasks. Existing architecture-based strategies encounter two primary challenges: 1) Integrating a pre-trained network with a trainable sub-network complicates the delicate balance between learning plasticity and memory stability across evolving tasks during learning. 2) The absence of robust interconnections between pre-trained networks and various sub-networks limits the effective retrieval of pertinent information during inference. In this study, we introduce the Artsy, inspired by the activation mechanisms of silent synapses via spike-timing-dependent plasticity observed in mature brains, to enhance the continual learning capabilities of pre-trained models. The Artsy integrates two key components: During training, the Artsy mimics mature brain dynamics by maintaining memory stability for previously learned knowledge within the pre-trained network while simultaneously promoting learning plasticity in task-specific sub-networks. During inference, artificial silent and functional synapses are utilized to establish precise connections between the pre-synaptic neurons in the pre-trained network and the post-synaptic neurons in the sub-networks, facilitated through synaptic consolidation, thereby enabling effective extraction of relevant information from test samples. Comprehensive experimental evaluations reveal that our model significantly outperforms conventional methods on class-incremental learning tasks, while also providing enhanced biological interpretability for architecture-based approaches. Moreover, we propose that the Artsy offers a promising avenue for simulating biological synaptic mechanisms, potentially advancing our understanding of neural plasticity in both artificial and biological systems.

cs.LG↗