arXiv subjects

Mojtaba Nayyeri

Publications and source records attributed to Mojtaba Nayyeri.

At least 19 recordsLinked to original sources

arXiv2026

FITTER: Vocabulary-Agnostic Cross-Domain Inference on Temporal Knowledge Graphs

Temporal knowledge graphs are central to many uses of the Semantic Web, but existing completion methods assume the entities, relation names, and timestamps to be reasoned about are already known at training time, restricting each model to a single graph and vocabulary. We propose FITTER, the first fully-inductive structural model for temporal knowledge graph link prediction that supports cross-domain transfer: the inference graph may contain entirely unseen entities, relation names, and timestamps drawn from a different domain. FITTER represents each predicate by its interaction patterns with others and time through encodings of relative rather than absolute ordering; message-passing fuses local and global temporal context to produce vocabulary-agnostic embeddings. We prove the temporal encoding is time-shift invariant and evaluate FITTER on cross-domain, cross-graph transfer over six temporal knowledge graph benchmarks of diverse domains, granularities, and time spans. FITTER consistently outperforms inductive baselines without retraining, indicating that vocabulary-agnostic structural learning is a viable foundation for inference over the heterogeneous knowledge graphs of the Semantic Web.

cs.AI↗

arXiv2026

STEREODISCO: Discovering Stereotypicality in LLMs

LLMs encode, convey, and perpetuate stereotypes. Prior computational research focuses on a small set of semantic axes investigated in social psychology, and operates on word embeddings produced by language models, leaving open which other semantic axes carry stereotypical associations in LLMs and how LLMs internally represent such axes. We introduce STEREODISCO, a framework that adapts the semantic differential method (Osgood et al., 1957) to the systematic study of stereotypes in LLM internal representations. STEREODISCO constructs approx. 2,000 candidate semantic axes from WordNet antonym synsets, recovers each as a geometric axis in the LLM's activation space via probing, and identifies stereotypical axes via a statistical test over concept projections. As a case study, we apply STEREODISCO to social group stereotypes with LLAMA-3-8B-INSTRUCT and MISTRAL-7B-INSTRUCT. We find that the two LLMs agree with each other on social group ratings more than with humans, suggesting that LLM-encoded stereotype content diverges from that documented in social psychology. We also discover stereotypical axes not investigated in prior work -- including humble vs. proud, narrow-minded vs. broad-minded, and cowardly vs. brave, which human annotators independently confirm.

cs.AI↗

arXiv2026

Retrieval-Augmented Generation of Ontologies from Relational Databases

Deriving OWL ontologies from relational database schemas supports semantic interoperability and downstream tasks such as knowledge graph population, ontology-based data access, graph-based learning, and automated reasoning. Existing approaches either require substantial expert effort or produce shallow ontologies that reflect the logical schema structure but fail to fully capture domain semantics. We present RIGOR (Retrieval-augmented Iterative Generation of RDB Ontologies), an LLM-driven pipeline that converts relational schemas into semantically rich OWL2DL ontologies with minimal human intervention. For each relational table, RIGOR generates a direct mapping to guarantee schema coverage, then enriches it via retrieval from three sources: relational schema context and documentation, external domain ontologies, and an ontology that grows incrementally as each validated fragment is integrated. A Gen-LLM produces provenance-annotated ontology fragments (delta ontologies), which are validated and, when needed, corrected by an independent Judge-LLM before integration. Guided by foreign-key constraints, the process iterates over relational tables until the full schema is covered. Experiments across three databases spanning two domains show that RIGOR consistently outperforms baseline methods across standard quality metrics while requiring no human oversight.

cs.DB↗

arXiv2026

Approximating Probabilistic Inference in Statistical EL with Knowledge Graph Embeddings

Statistical information is ubiquitous but drawing valid conclusions from it is prohibitively hard. We explain how knowledge graph embeddings can be used to approximate probabilistic inference efficiently using the example of Statistical EL (SEL), a statistical extension of the lightweight Description Logic EL. We provide proofs for runtime and soundness guarantees, and empirically evaluate the runtime and approximation quality of our approach.

cs.AI↗

arXiv2026

Leveraging Graph Structure in Seq2Seq Models for Knowledge Graph Link Prediction

We introduce Graph-Augmented Sequence-to-Sequence (GA-S2S), a novel framework that integrates a T5-small encoder-decoder with a Relational Graph Attention Network (RGAT) to improve link prediction in knowledge graphs. While existing Seq2Seq models rely solely on surface-level textual descriptions of entities and relations and at best, flatten the neighborhoods of a query entity into a single linear sequence, thereby discarding the inherent graph structure, GA-S2S jointly encodes both textual features and the full $k$-hop subgraph topology surrounding the query entity. By integrating raw encoder outputs with RGAT's relation-aware embeddings, our model captures and leverages richer multi-hop relational patterns and textual information. Our preliminary experiments on the CoDEx dataset demonstrate that GA-S2S outperforms competitive Seq2Seq-based baseline models, achieving up to a 19\% relative gain in link prediction accuracy.

cs.CL↗

arXiv2026

Towards Foundation Models for Relational Databases with Language Models and Graph Neural Networks

Relational databases store much of the world's structured information, and they are essential for driving complex predictive applications. However, deep learning progress on relational data remains limited, as conventional approaches flatten databases into single tables via manual feature engineering, discarding relational context. Relational deep learning (RDL) addresses this by modeling databases as relational entity graphs (REGs) for graph neural networks (GNNs), but remains task- and database-specific. To combine the strengths of both paradigms, we propose a hybrid architecture combining a fine-tuned BART encoder to capture intra-row semantics with a GraphSAGE-based GNN over REGs to inject relational context. Experiments on RelBench show that the GNN substantially enriches BART's row embeddings, achieving a ROC-AUC of 67.40 on the driver-dnf task from the rel-f1 dataset. This performance is competitive with supervised baselines such as LightGBM (68.86) and narrows the gap to RDL (72.62) to within 5.22 points, though a substantial gap remains to state-of-the-art foundation models such as KumoRFM (82.63). These results suggest that lightweight hybrid LM-GNN architectures offer a promising and resource-efficient path towards foundation models for relational databases.

cs.DB↗

arXiv2025

Geometric Structural Knowledge Graph Foundation Model

Structural knowledge graph foundation models aim to generalize reasoning to completely new graphs with unseen entities and relations. A key limitation of existing approaches like Ultra is their reliance on a single relational transformation (e.g., element-wise multiplication) in message passing, which can constrain expressiveness and fail to capture diverse relational and structural patterns exhibited on diverse graphs. In this paper, we propose Gamma, a novel foundation model that introduces multi-head geometric attention to knowledge graph reasoning. Gamma replaces the single relational transformation with multiple parallel ones, including real, complex, split-complex, and dual number based transformations, each designed to model different relational structures. A relational conditioned attention fusion mechanism then adaptively fuses them at link level via a lightweight gating with entropy regularization, allowing the model to robustly emphasize the most appropriate relational bias for each triple pattern. We present a full formalization of these algebraic message functions and discuss how their combination increases expressiveness beyond any single space. Comprehensive experiments on 56 diverse knowledge graphs demonstrate that Gamma consistently outperforms Ultra in zero-shot inductive link prediction, with a 5.5% improvement in mean reciprocal rank on the inductive benchmarks and a 4.4% improvement across all benchmarks, highlighting benefits from complementary geometric representations.

cs.AI↗

arXiv2025

Full-History Graphs with Edge-Type Decoupled Networks for Temporal Reasoning

Modeling evolving interactions among entities is critical in many real-world tasks. For example, predicting driver maneuvers in traffic requires tracking how neighboring vehicles accelerate, brake, and change lanes relative to one another over consecutive frames. Likewise, detecting financial fraud hinges on following the flow of funds through successive transactions as they propagate through the network. Unlike classic time-series forecasting, these settings demand reasoning over who interacts with whom and when, calling for a temporal-graph representation that makes both the relations and their evolution explicit. Existing temporal-graph methods typically use snapshot graphs to encode temporal evolution. We introduce a full-history graph that instantiates one node for every entity at every time step and separates two edge sets: (i) intra-time-step edges that capture relations within a single frame and (ii) inter-time-step edges that connect an entity to itself at consecutive steps. To learn on this graph we design an Edge-Type Decoupled Network (ETDNet) with parallel modules: a graph-attention module aggregates information along intra-time-step edges, a multi-head temporal-attention module attends over an entity's inter-time-step history, and a fusion module combines the two messages after every layer. Evaluated on driver-intention prediction (Waymo) and Bitcoin fraud detection (Elliptic++), ETDNet consistently surpasses strong baselines, lifting Waymo joint accuracy to 75.6\% (vs. 74.1\%) and raising Elliptic++ illicit-class F1 to 88.1\% (vs. 60.4\%). These gains demonstrate the benefit of representing structural and temporal relations as distinct edges in a single graph.

cs.AI↗

arXiv2025

SEMMA: A Semantic Aware Knowledge Graph Foundation Model

Knowledge Graph Foundation Models (KGFMs) have shown promise in enabling zero-shot reasoning over unseen graphs by learning transferable patterns. However, most existing KGFMs rely solely on graph structure, overlooking the rich semantic signals encoded in textual attributes. We introduce SEMMA, a dual-module KGFM that systematically integrates transferable textual semantics alongside structure. SEMMA leverages Large Language Models (LLMs) to enrich relation identifiers, generating semantic embeddings that subsequently form a textual relation graph, which is fused with the structural component. Across 54 diverse KGs, SEMMA outperforms purely structural baselines like ULTRA in fully inductive link prediction. Crucially, we show that in more challenging generalization settings, where the test-time relation vocabulary is entirely unseen, structural methods collapse while SEMMA is 2x more effective. Our findings demonstrate that textual semantics are critical for generalization in settings where structure alone fails, highlighting the need for foundation models that unify structural and linguistic signals in knowledge reasoning.

cs.CL↗

arXiv2025

Mathematical Reasoning for Unmanned Aerial Vehicles: A RAG-Based Approach for Complex Arithmetic Reasoning

Autonomous UAV operation necessitates reliable mathematical reasoning for tasks such as trajectory planning and power management. While traditional flight control relies on hardcoded equations, recent Large Language Models (LLMs) offer potential for more flexible problem-solving but struggle with reliably selecting and applying correct mathematical formulations and executing precise multi-step arithmetic. We propose RAG-UAV, a retrieval-augmented generation framework designed to improve the mathematical reasoning of several LLMs (including GPT o1/Turbo, Llama-3.2/3.3, Mistral, and DeepSeek R1) in UAV-specific contexts by providing access to relevant domain literature. To conduct an initial assessment, we introduce the UAV-Math-Bench, a 20-question problem set of UAV-centric mathematical problems across four difficulty levels. Our experiments demonstrate that incorporating retrieval substantially increases exact answer accuracy (achieving up to 75% with o1), reduces instances of incorrect formulation selection (from 25% without RAG to 5\% with RAG), and decreases numerical errors, reducing Mean Squared Error (MSE) by orders of magnitude for the best-performing models. This pilot study indicates that RAG can enable general-purpose LLMs to function as more reliable tools for engineering analysis, although direct real-time flight control requires further investigation and validation on a larger scale. All benchmark data, questions, and answers are publicly available.

cs.AI↗

arXiv2025

Towards Foundation Model on Temporal Knowledge Graph Reasoning

Temporal Knowledge Graphs (TKGs) store temporal facts with quadruple formats (s, p, o, t). Existing Temporal Knowledge Graph Embedding (TKGE) models perform link prediction tasks in transductive or semi-inductive settings, which means the entities, relations, and temporal information in the test graph are fully or partially observed during training. Such reliance on seen elements during inference limits the models' ability to transfer to new domains and generalize to real-world scenarios. A central limitation is the difficulty in learning representations for entities, relations, and timestamps that are transferable and not tied to dataset-specific vocabularies. To overcome these limitations, we introduce the first fully-inductive approach to temporal knowledge graph link prediction. Our model employs sinusoidal positional encodings to capture fine-grained temporal patterns and generates adaptive entity and relation representations using message passing conditioned on both local and global temporal contexts. Our model design is agnostic to temporal granularity and time span, effectively addressing temporal discrepancies across TKGs and facilitating time-aware structural information transfer. As a pretrained, scalable, and transferable model, POSTRA demonstrates strong zero-shot performance on unseen temporal knowledge graphs, effectively generalizing to novel entities, relations, and timestamps. Extensive theoretical analysis and empirical results show that a single pretrained model can improve zero-shot performance on various inductive temporal reasoning scenarios, marking a significant step toward a foundation model for temporal KGs.

cs.AI↗

arXiv2025

Modeling Relational Patterns for Logical Query Answering over Knowledge Graphs

Answering first-order logical (FOL) queries over knowledge graphs (KG) remains a challenging task mainly due to KG incompleteness. Query embedding approaches this problem by computing the low-dimensional vector representations of entities, relations, and logical queries. KGs exhibit relational patterns such as symmetry and composition and modeling the patterns can further enhance the performance of query embedding models. However, the role of such patterns in answering FOL queries by query embedding models has not been yet studied in the literature. In this paper, we fill in this research gap and empower FOL queries reasoning with pattern inference by introducing an inductive bias that allows for learning relation patterns. To this end, we develop a novel query embedding method, RoConE, that defines query regions as geometric cones and algebraic query operators by rotations in complex space. RoConE combines the advantages of Cone as a well-specified geometric representation for query embedding, and also the rotation operator as a powerful algebraic operation for pattern inference. Our experimental results on several benchmark datasets confirm the advantage of relational patterns for enhancing logical query answering task.

cs.DB↗

arXiv2024

Predictive Multiplicity of Knowledge Graph Embeddings in Link Prediction

Knowledge graph embedding (KGE) models are often used to predict missing links for knowledge graphs (KGs). However, multiple KG embeddings can perform almost equally well for link prediction yet give conflicting predictions for unseen queries. This phenomenon is termed \textit{predictive multiplicity} in the literature. It poses substantial risks for KGE-based applications in high-stake domains but has been overlooked in KGE research. We define predictive multiplicity in link prediction, introduce evaluation metrics and measure predictive multiplicity for representative KGE methods on commonly used benchmark datasets. Our empirical study reveals significant predictive multiplicity in link prediction, with $8\%$ to $39\%$ testing queries exhibiting conflicting predictions. We address this issue by leveraging voting methods from social choice theory, significantly mitigating conflicts by $66\%$ to $78\%$ in our experiments.

cs.AI↗

arXiv2024

Expanding Expressivity in Transformer Models with MöbiusAttention

Attention mechanisms and Transformer architectures have revolutionized Natural Language Processing (NLP) by enabling exceptional modeling of long-range dependencies and capturing intricate linguistic patterns. However, their inherent reliance on linear operations in the form of matrix multiplications limits their ability to fully capture inter-token relationships on their own. We propose MöbiusAttention, a novel approach that integrates Möbius transformations within the attention mechanism of Transformer-based models. Möbius transformations are non-linear operations in spaces over complex numbers with the ability to map between various geometries. By incorporating these properties, MöbiusAttention empowers models to learn more intricate geometric relationships between tokens and capture a wider range of information through complex-valued weight vectors. We build and pre-train a BERT and a RoFormer version enhanced with MöbiusAttention, which we then finetune on the GLUE benchmark. We evaluate empirically our approach against the baseline BERT and RoFormer models on a range of downstream tasks. Our approach compares favorably against the baseline models, even with smaller number of parameters suggesting the enhanced expressivity of MöbiusAttention. This research paves the way for exploring the potential of Möbius transformations in the complex projective space to enhance the expressivity and performance of foundation models.

cs.LG↗

arXiv2024

Generating $SROI^-$ Ontologies via Knowledge Graph Query Embedding Learning

Query embedding approaches answer complex logical queries over incomplete knowledge graphs (KGs) by computing and operating on low-dimensional vector representations of entities, relations, and queries. However, current query embedding models heavily rely on excessively parameterized neural networks and cannot explain the knowledge learned from the graph. We propose a novel query embedding method, AConE, which explains the knowledge learned from the graph in the form of $SROI^-$ description logic axioms while being more parameter-efficient than most existing approaches. AConE associates queries to a $SROI^-$ description logic concept. Every $SROI^-$ concept is embedded as a cone in complex vector space, and each $SROI^-$ relation is embedded as a transformation that rotates and scales cones. We show theoretically that AConE can learn $SROI^-$ axioms, and defines an algebra whose operations correspond one to one to $SROI^-$ description logic concept constructs. Our empirical study on multiple query datasets shows that AConE achieves superior results over previous baselines with fewer parameters. Notably on the WN18RR dataset, AConE achieves significant improvement over baseline models. We provide comprehensive analyses showing that the capability to represent axioms positively impacts the results of query answering.

cs.AI↗

arXiv2024

Hybrid Reasoning Based on Large Language Models for Autonomous Car Driving

Large Language Models (LLMs) have garnered significant attention for their ability to understand text and images, generate human-like text, and perform complex reasoning tasks. However, their ability to generalize this advanced reasoning with a combination of natural language text for decision-making in dynamic situations requires further exploration. In this study, we investigate how well LLMs can adapt and apply a combination of arithmetic and common-sense reasoning, particularly in autonomous driving scenarios. We hypothesize that LLMs hybrid reasoning abilities can improve autonomous driving by enabling them to analyze detected object and sensor data, understand driving regulations and physical laws, and offer additional context. This addresses complex scenarios, like decisions in low visibility (due to weather conditions), where traditional methods might fall short. We evaluated Large Language Models (LLMs) based on accuracy by comparing their answers with human-generated ground truth inside CARLA. The results showed that when a combination of images (detected objects) and sensor data is fed into the LLM, it can offer precise information for brake and throttle control in autonomous vehicles across various weather conditions. This formulation and answers can assist in decision-making for auto-pilot systems.

cs.CV↗

arXiv2023

HGE: Embedding Temporal Knowledge Graphs in a Product Space of Heterogeneous Geometric Subspaces

Temporal knowledge graphs represent temporal facts $(s,p,o,τ)$ relating a subject $s$ and an object $o$ via a relation label $p$ at time $τ$, where $τ$ could be a time point or time interval. Temporal knowledge graphs may exhibit static temporal patterns at distinct points in time and dynamic temporal patterns between different timestamps. In order to learn a rich set of static and dynamic temporal patterns and apply them for inference, several embedding approaches have been suggested in the literature. However, as most of them resort to single underlying embedding spaces, their capability to model all kinds of temporal patterns was severely limited by having to adhere to the geometric property of their one embedding space. We lift this limitation by an embedding approach that maps temporal facts into a product space of several heterogeneous geometric subspaces with distinct geometric properties, i.e.\ Complex, Dual, and Split-complex spaces. In addition, we propose a temporal-geometric attention mechanism to integrate information from different geometric subspaces conveniently according to the captured relational and temporal information. Experimental results on standard temporal benchmark datasets favorably evaluate our approach against state-of-the-art models.

cs.AI↗

arXiv2023

NestE: Modeling Nested Relational Structures for Knowledge Graph Reasoning

Reasoning with knowledge graphs (KGs) has primarily focused on triple-shaped facts. Recent advancements have been explored to enhance the semantics of these facts by incorporating more potent representations, such as hyper-relational facts. However, these approaches are limited to \emph{atomic facts}, which describe a single piece of information. This paper extends beyond \emph{atomic facts} and delves into \emph{nested facts}, represented by quoted triples where subjects and objects are triples themselves (e.g., ((\emph{BarackObama}, \emph{holds\_position}, \emph{President}), \emph{succeed\_by}, (\emph{DonaldTrump}, \emph{holds\_position}, \emph{President}))). These nested facts enable the expression of complex semantics like \emph{situations} over time and \emph{logical patterns} over entities and relations. In response, we introduce NestE, a novel KG embedding approach that captures the semantics of both atomic and nested factual knowledge. NestE represents each atomic fact as a $1\times3$ matrix, and each nested relation is modeled as a $3\times3$ matrix that rotates the $1\times3$ atomic fact matrix through matrix multiplication. Each element of the matrix is represented as a complex number in the generalized 4D hypercomplex space, including (spherical) quaternions, hyperbolic quaternions, and split-quaternions. Through thorough analysis, we demonstrate the embedding's efficacy in capturing diverse logical patterns over nested facts, surpassing the confines of first-order logic-like expressions. Our experimental results showcase NestE's significant performance gains over current baselines in triple prediction and conditional link prediction. The code and pre-trained models are open available at https://github.com/xiongbo010/NestE.

cs.AI↗