arXiv subjects

Mojtaba Nayyeri

Publications and source records attributed to Mojtaba Nayyeri.

35 records · Page 2Linked to original sources

arXiv2023

Integrating Knowledge Graph embedding and pretrained Language Models in Hypercomplex Spaces

Knowledge Graphs, such as Wikidata, comprise structural and textual knowledge in order to represent knowledge. For each of the two modalities dedicated approaches for graph embedding and language models learn patterns that allow for predicting novel structural knowledge. Few approaches have integrated learning and inference with both modalities and these existing ones could only partially exploit the interaction of structural and textual knowledge. In our approach, we build on existing strong representations of single modalities and we use hypercomplex algebra to represent both, (i), single-modality embedding as well as, (ii), the interaction between different modalities and their complementary means of knowledge representation. More specifically, we suggest Dihedron and Quaternion representations of 4D hypercomplex numbers to integrate four modalities namely structural knowledge graph embedding, word-level representations (e.g.\ Word2vec, Fasttext), sentence-level representations (Sentence transformer), and document-level representations (sentence transformer, Doc2vec). Our unified vector representation scores the plausibility of labelled edges via Hamilton and Dihedron products, thus modeling pairwise interactions between different modalities. Extensive experimental evaluation on standard benchmark datasets shows the superiority of our two new models using abundant textual information besides sparse structural knowledge to enhance performance in link prediction tasks.

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arXiv2023

Geometric Relational Embeddings: A Survey

Geometric relational embeddings map relational data as geometric objects that combine vector information suitable for machine learning and structured/relational information for structured/relational reasoning, typically in low dimensions. Their preservation of relational structures and their appealing properties and interpretability have led to their uptake for tasks such as knowledge graph completion, ontology and hierarchy reasoning, logical query answering, and hierarchical multi-label classification. We survey methods that underly geometric relational embeddings and categorize them based on (i) the embedding geometries that are used to represent the data; and (ii) the relational reasoning tasks that they aim to improve. We identify the desired properties (i.e., inductive biases) of each kind of embedding and discuss some potential future work.

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arXiv2023

Link Prediction with Attention Applied on Multiple Knowledge Graph Embedding Models

Predicting missing links between entities in a knowledge graph is a fundamental task to deal with the incompleteness of data on the Web. Knowledge graph embeddings map nodes into a vector space to predict new links, scoring them according to geometric criteria. Relations in the graph may follow patterns that can be learned, e.g., some relations might be symmetric and others might be hierarchical. However, the learning capability of different embedding models varies for each pattern and, so far, no single model can learn all patterns equally well. In this paper, we combine the query representations from several models in a unified one to incorporate patterns that are independently captured by each model. Our combination uses attention to select the most suitable model to answer each query. The models are also mapped onto a non-Euclidean manifold, the Poincaré ball, to capture structural patterns, such as hierarchies, besides relational patterns, such as symmetry. We prove that our combination provides a higher expressiveness and inference power than each model on its own. As a result, the combined model can learn relational and structural patterns. We conduct extensive experimental analysis with various link prediction benchmarks showing that the combined model outperforms individual models, including state-of-the-art approaches.

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arXiv2022

Faithiful Embeddings for EL++ Knowledge Bases

Recently, increasing efforts are put into learning continual representations for symbolic knowledge bases (KBs). However, these approaches either only embed the data-level knowledge (ABox) or suffer from inherent limitations when dealing with concept-level knowledge (TBox), i.e., they cannot faithfully model the logical structure present in the KBs. We present BoxEL, a geometric KB embedding approach that allows for better capturing the logical structure (i.e., ABox and TBox axioms) in the description logic EL++. BoxEL models concepts in a KB as axis-parallel boxes that are suitable for modeling concept intersection, entities as points inside boxes, and relations between concepts/entities as affine transformations. We show theoretical guarantees (soundness) of BoxEL for preserving logical structure. Namely, the learned model of BoxEL embedding with loss 0 is a (logical) model of the KB. Experimental results on (plausible) subsumption reasonings and a real-world application for protein-protein prediction show that BoxEL outperforms traditional knowledge graph embedding methods as well as state-of-the-art EL++ embedding approaches.

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arXiv2022

Ultrahyperbolic Knowledge Graph Embeddings

Recent knowledge graph (KG) embeddings have been advanced by hyperbolic geometry due to its superior capability for representing hierarchies. The topological structures of real-world KGs, however, are rather heterogeneous, i.e., a KG is composed of multiple distinct hierarchies and non-hierarchical graph structures. Therefore, a homogeneous (either Euclidean or hyperbolic) geometry is not sufficient for fairly representing such heterogeneous structures. To capture the topological heterogeneity of KGs, we present an ultrahyperbolic KG embedding (UltraE) in an ultrahyperbolic (or pseudo-Riemannian) manifold that seamlessly interleaves hyperbolic and spherical manifolds. In particular, we model each relation as a pseudo-orthogonal transformation that preserves the pseudo-Riemannian bilinear form. The pseudo-orthogonal transformation is decomposed into various operators (i.e., circular rotations, reflections and hyperbolic rotations), allowing for simultaneously modeling heterogeneous structures as well as complex relational patterns. Experimental results on three standard KGs show that UltraE outperforms previous Euclidean- and hyperbolic-based approaches.

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arXiv2022

Geometric Algebra based Embeddings for Static and Temporal Knowledge Graph Completion

Recent years, Knowledge Graph Embeddings (KGEs) have shown promising performance on link prediction tasks by mapping the entities and relations from a Knowledge Graph (KG) into a geometric space and thus have gained increasing attentions. In addition, many recent Knowledge Graphs involve evolving data, e.g., the fact (\textit{Obama}, \textit{PresidentOf}, \textit{USA}) is valid only from 2009 to 2017. This introduces important challenges for knowledge representation learning since such temporal KGs change over time. In this work, we strive to move beyond the complex or hypercomplex space for KGE and propose a novel geometric algebra based embedding approach, GeomE, which uses multivector representations and the geometric product to model entities and relations. GeomE subsumes several state-of-the-art KGE models and is able to model diverse relations patterns. On top of this, we extend GeomE to TGeomE for temporal KGE, which performs 4th-order tensor factorization of a temporal KG and devises a new linear temporal regularization for time representation learning. Moreover, we study the effect of time granularity on the performance of TGeomE models. Experimental results show that our proposed models achieve the state-of-the-art performances on link prediction over four commonly-used static KG datasets and four well-established temporal KG datasets across various metrics.

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arXiv2021

Trans4E: Link Prediction on Scholarly Knowledge Graphs

The incompleteness of Knowledge Graphs (KGs) is a crucial issue affecting the quality of AI-based services. In the scholarly domain, KGs describing research publications typically lack important information, hindering our ability to analyse and predict research dynamics. In recent years, link prediction approaches based on Knowledge Graph Embedding models became the first aid for this issue. In this work, we present Trans4E, a novel embedding model that is particularly fit for KGs which include N to M relations with N$\gg$M. This is typical for KGs that categorize a large number of entities (e.g., research articles, patents, persons) according to a relatively small set of categories. Trans4E was applied on two large-scale knowledge graphs, the Academia/Industry DynAmics (AIDA) and Microsoft Academic Graph (MAG), for completing the information about Fields of Study (e.g., 'neural networks', 'machine learning', 'artificial intelligence'), and affiliation types (e.g., 'education', 'company', 'government'), improving the scope and accuracy of the resulting data. We evaluated our approach against alternative solutions on AIDA, MAG, and four other benchmarks (FB15k, FB15k-237, WN18, and WN18RR). Trans4E outperforms the other models when using low embedding dimensions and obtains competitive results in high dimensions.

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arXiv2021

Multiple Run Ensemble Learning with Low-Dimensional Knowledge Graph Embeddings

Among the top approaches of recent years, link prediction using knowledge graph embedding (KGE) models has gained significant attention for knowledge graph completion. Various embedding models have been proposed so far, among which, some recent KGE models obtain state-of-the-art performance on link prediction tasks by using embeddings with a high dimension (e.g. 1000) which accelerate the costs of training and evaluation considering the large scale of KGs. In this paper, we propose a simple but effective performance boosting strategy for KGE models by using multiple low dimensions in different repetition rounds of the same model. For example, instead of training a model one time with a large embedding size of 1200, we repeat the training of the model 6 times in parallel with an embedding size of 200 and then combine the 6 separate models for testing while the overall numbers of adjustable parameters are same (6*200=1200) and the total memory footprint remains the same. We show that our approach enables different models to better cope with their expressiveness issues on modeling various graph patterns such as symmetric, 1-n, n-1 and n-n. In order to justify our findings, we conduct experiments on various KGE models. Experimental results on standard benchmark datasets, namely FB15K, FB15K-237 and WN18RR, show that multiple low-dimensional models of the same kind outperform the corresponding single high-dimensional models on link prediction in a certain range and have advantages in training efficiency by using parallel training while the overall numbers of adjustable parameters are same.

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arXiv2021

Knowledge Graph Embeddings in Geometric Algebras

Knowledge graph (KG) embedding aims at embedding entities and relations in a KG into a lowdimensional latent representation space. Existing KG embedding approaches model entities andrelations in a KG by utilizing real-valued , complex-valued, or hypercomplex-valued (Quaternionor Octonion) representations, all of which are subsumed into a geometric algebra. In this work,we introduce a novel geometric algebra-based KG embedding framework, GeomE, which uti-lizes multivector representations and the geometric product to model entities and relations. Ourframework subsumes several state-of-the-art KG embedding approaches and is advantageouswith its ability of modeling various key relation patterns, including (anti-)symmetry, inversionand composition, rich expressiveness with higher degree of freedom as well as good general-ization capacity. Experimental results on multiple benchmark knowledge graphs show that theproposed approach outperforms existing state-of-the-art models for link prediction.

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arXiv2021

5* Knowledge Graph Embeddings with Projective Transformations

Performing link prediction using knowledge graph embedding models has become a popular approach for knowledge graph completion. Such models employ a transformation function that maps nodes via edges into a vector space in order to measure the likelihood of the links. While mapping the individual nodes, the structure of subgraphs is also transformed. Most of the embedding models designed in Euclidean geometry usually support a single transformation type - often translation or rotation, which is suitable for learning on graphs with small differences in neighboring subgraphs. However, multi-relational knowledge graphs often include multiple sub-graph structures in a neighborhood (e.g. combinations of path and loop structures), which current embedding models do not capture well. To tackle this problem, we propose a novel KGE model (5*E) in projective geometry, which supports multiple simultaneous transformations - specifically inversion, reflection, translation, rotation, and homothety. The model has several favorable theoretical properties and subsumes the existing approaches. It outperforms them on the most widely used link prediction benchmarks

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arXiv2020

Temporal Knowledge Graph Embedding Model based on Additive Time Series Decomposition

Knowledge Graph (KG) embedding has attracted more attention in recent years. Most KG embedding models learn from time-unaware triples. However, the inclusion of temporal information beside triples would further improve the performance of a KGE model. In this regard, we propose ATiSE, a temporal KG embedding model which incorporates time information into entity/relation representations by using Additive Time Series decomposition. Moreover, considering the temporal uncertainty during the evolution of entity/relation representations over time, we map the representations of temporal KGs into the space of multi-dimensional Gaussian distributions. The mean of each entity/relation embedding at a time step shows the current expected position, whereas its covariance (which is temporally stationary) represents its temporal uncertainty. Experimental results show that ATiSE chieves the state-of-the-art on link prediction over four temporal KGs.

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arXiv2020

TeRo: A Time-aware Knowledge Graph Embedding via Temporal Rotation

In the last few years, there has been a surge of interest in learning representations of entitiesand relations in knowledge graph (KG). However, the recent availability of temporal knowledgegraphs (TKGs) that contain time information for each fact created the need for reasoning overtime in such TKGs. In this regard, we present a new approach of TKG embedding, TeRo, which defines the temporal evolution of entity embedding as a rotation from the initial time to the currenttime in the complex vector space. Specially, for facts involving time intervals, each relation isrepresented as a pair of dual complex embeddings to handle the beginning and the end of therelation, respectively. We show our proposed model overcomes the limitations of the existing KG embedding models and TKG embedding models and has the ability of learning and inferringvarious relation patterns over time. Experimental results on four different TKGs show that TeRo significantly outperforms existing state-of-the-art models for link prediction. In addition, we analyze the effect of time granularity on link prediction over TKGs, which as far as we know hasnot been investigated in previous literature.

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arXiv2020

Motif Learning in Knowledge Graphs Using Trajectories Of Differential Equations

Knowledge Graph Embeddings (KGEs) have shown promising performance on link prediction tasks by mapping the entities and relations from a knowledge graph into a geometric space (usually a vector space). Ultimately, the plausibility of the predicted links is measured by using a scoring function over the learned embeddings (vectors). Therefore, the capability in preserving graph characteristics including structural aspects and semantics highly depends on the design of the KGE, as well as the inherited abilities from the underlying geometry. Many KGEs use the flat geometry which renders them incapable of preserving complex structures and consequently causes wrong inferences by the models. To address this problem, we propose a neuro differential KGE that embeds nodes of a KG on the trajectories of Ordinary Differential Equations (ODEs). To this end, we represent each relation (edge) in a KG as a vector field on a smooth Riemannian manifold. We specifically parameterize ODEs by a neural network to represent various complex shape manifolds and more importantly complex shape vector fields on the manifold. Therefore, the underlying embedding space is capable of getting various geometric forms to encode complexity in subgraph structures with different motifs. Experiments on synthetic and benchmark dataset as well as social network KGs justify the ODE trajectories as a means to structure preservation and consequently avoiding wrong inferences over state-of-the-art KGE models.

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arXiv2019

Toward Understanding The Effect Of Loss function On Then Performance Of Knowledge Graph Embedding

Knowledge graphs (KGs) represent world's facts in structured forms. KG completion exploits the existing facts in a KG to discover new ones. Translation-based embedding model (TransE) is a prominent formulation to do KG completion. Despite the efficiency of TransE in memory and time, it suffers from several limitations in encoding relation patterns such as symmetric, reflexive etc. To resolve this problem, most of the attempts have circled around the revision of the score function of TransE i.e., proposing a more complicated score function such as Trans(A, D, G, H, R, etc) to mitigate the limitations. In this paper, we tackle this problem from a different perspective. We show that existing theories corresponding to the limitations of TransE are inaccurate because they ignore the effect of loss function. Accordingly, we pose theoretical investigations of the main limitations of TransE in the light of loss function. To the best of our knowledge, this has not been investigated so far comprehensively. We show that by a proper selection of the loss function for training the TransE model, the main limitations of the model are mitigated. This is explained by setting upper-bound for the scores of positive samples, showing the region of truth (i.e., the region that a triple is considered positive by the model). Our theoretical proofs with experimental results fill the gap between the capability of translation-based class of embedding models and the loss function. The theories emphasise the importance of the selection of the loss functions for training the models. Our experimental evaluations on different loss functions used for training the models justify our theoretical proofs and confirm the importance of the loss functions on the performance.

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arXiv2019

LogicENN: A Neural Based Knowledge Graphs Embedding Model with Logical Rules

Knowledge graph embedding models have gained significant attention in AI research. Recent works have shown that the inclusion of background knowledge, such as logical rules, can improve the performance of embeddings in downstream machine learning tasks. However, so far, most existing models do not allow the inclusion of rules. We address the challenge of including rules and present a new neural based embedding model (LogicENN). We prove that LogicENN can learn every ground truth of encoded rules in a knowledge graph. To the best of our knowledge, this has not been proved so far for the neural based family of embedding models. Moreover, we derive formulae for the inclusion of various rules, including (anti-)symmetric, inverse, irreflexive and transitive, implication, composition, equivalence and negation. Our formulation allows to avoid grounding for implication and equivalence relations. Our experiments show that LogicENN outperforms the state-of-the-art models in link prediction.

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arXiv2019

Adaptive Margin Ranking Loss for Knowledge Graph Embeddings via a Correntropy Objective Function

Translation-based embedding models have gained significant attention in link prediction tasks for knowledge graphs. TransE is the primary model among translation-based embeddings and is well-known for its low complexity and high efficiency. Therefore, most of the earlier works have modified the score function of the TransE approach in order to improve the performance of link prediction tasks. Nevertheless, proven theoretically and experimentally, the performance of TransE strongly depends on the loss function. Margin Ranking Loss (MRL) has been one of the earlier loss functions which is widely used for training TransE. However, the scores of positive triples are not necessarily enforced to be sufficiently small to fulfill the translation from head to tail by using relation vector (original assumption of TransE). To tackle this problem, several loss functions have been proposed recently by adding upper bounds and lower bounds to the scores of positive and negative samples. Although highly effective, previously developed models suffer from an expansion in search space for a selection of the hyperparameters (in particular the upper and lower bounds of scores) on which the performance of the translation-based models is highly dependent. In this paper, we propose a new loss function dubbed Adaptive Margin Loss (AML) for training translation-based embedding models. The formulation of the proposed loss function enables an adaptive and automated adjustment of the margin during the learning process. Therefore, instead of obtaining two values (upper bound and lower bound), only the center of a margin needs to be determined. During learning, the margin is expanded automatically until it converges. In our experiments on a set of standard benchmark datasets including Freebase and WordNet, the effectiveness of AML is confirmed for training TransE on link prediction tasks.

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arXiv2019

Soft Marginal TransE for Scholarly Knowledge Graph Completion

Knowledge graphs (KGs), i.e. representation of information as a semantic graph, provide a significant test bed for many tasks including question answering, recommendation, and link prediction. Various amount of scholarly metadata have been made vailable as knowledge graphs from the diversity of data providers and agents. However, these high-quantities of data remain far from quality criteria in terms of completeness while growing at a rapid pace. Most of the attempts in completing such KGs are following traditional data digitization, harvesting and collaborative curation approaches. Whereas, advanced AI-related approaches such as embedding models - specifically designed for such tasks - are usually evaluated for standard benchmarks such as Freebase and Wordnet. The tailored nature of such datasets prevents those approaches to shed the lights on more accurate discoveries. Application of such models on domain-specific KGs takes advantage of enriched meta-data and provides accurate results where the underlying domain can enormously benefit. In this work, the TransE embedding model is reconciled for a specific link prediction task on scholarly metadata. The results show a significant shift in the accuracy and performance evaluation of the model on a dataset with scholarly metadata. The newly proposed version of TransE obtains 99.9% for link prediction task while original TransE gets 95%. In terms of accuracy and Hit@10, TransE outperforms other embedding models such as ComplEx, TransH and TransR experimented over scholarly knowledge graphs

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