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Nan Liu

Publications and source records attributed to Nan Liu.

At least 91 records · Page 5Linked to original sources

Fairness-Aware Interpretable Modeling (FAIM) for Trustworthy Machine Learning in Healthcare

The escalating integration of machine learning in high-stakes fields such as healthcare raises substantial concerns about model fairness. We propose an interpretable framework - Fairness-Aware Interpretable Modeling (FAIM), to improve model fairness without compromising performance, featuring an interactive interface to identify a "fairer" model from a set of high-performing models and promoting the integration of data-driven evidence and clinical expertise to enhance contextualized fairness. We demonstrated FAIM's value in reducing sex and race biases by predicting hospital admission with two real-world databases, MIMIC-IV-ED and SGH-ED. We show that for both datasets, FAIM models not only exhibited satisfactory discriminatory performance but also significantly mitigated biases as measured by well-established fairness metrics, outperforming commonly used bias-mitigation methods. Our approach demonstrates the feasibility of improving fairness without sacrificing performance and provides an a modeling mode that invites domain experts to engage, fostering a multidisciplinary effort toward tailored AI fairness.

cs.LG↗

Developing Federated Time-to-Event Scores Using Heterogeneous Real-World Survival Data

Survival analysis serves as a fundamental component in numerous healthcare applications, where the determination of the time to specific events (such as the onset of a certain disease or death) for patients is crucial for clinical decision-making. Scoring systems are widely used for swift and efficient risk prediction. However, existing methods for constructing survival scores presume that data originates from a single source, posing privacy challenges in collaborations with multiple data owners. We propose a novel framework for building federated scoring systems for multi-site survival outcomes, ensuring both privacy and communication efficiency. We applied our approach to sites with heterogeneous survival data originating from emergency departments in Singapore and the United States. Additionally, we independently developed local scores at each site. In testing datasets from each participant site, our proposed federated scoring system consistently outperformed all local models, evidenced by higher integrated area under the receiver operating characteristic curve (iAUC) values, with a maximum improvement of 11.6%. Additionally, the federated score's time-dependent AUC(t) values showed advantages over local scores, exhibiting narrower confidence intervals (CIs) across most time points. The model developed through our proposed method exhibits effective performance on each local site, signifying noteworthy implications for healthcare research. Sites participating in our proposed federated scoring model training gained benefits by acquiring survival models with enhanced prediction accuracy and efficiency. This study demonstrates the effectiveness of our privacy-preserving federated survival score generation framework and its applicability to real-world heterogeneous survival data.

cs.AI↗

Survival modeling using deep learning, machine learning and statistical methods: A comparative analysis for predicting mortality after hospital admission

Survival analysis is essential for studying time-to-event outcomes and providing a dynamic understanding of the probability of an event occurring over time. Various survival analysis techniques, from traditional statistical models to state-of-the-art machine learning algorithms, support healthcare intervention and policy decisions. However, there remains ongoing discussion about their comparative performance. We conducted a comparative study of several survival analysis methods, including Cox proportional hazards (CoxPH), stepwise CoxPH, elastic net penalized Cox model, Random Survival Forests (RSF), Gradient Boosting machine (GBM) learning, AutoScore-Survival, DeepSurv, time-dependent Cox model based on neural network (CoxTime), and DeepHit survival neural network. We applied the concordance index (C-index) for model goodness-of-fit, and integral Brier scores (IBS) for calibration, and considered the model interpretability. As a case study, we performed a retrospective analysis of patients admitted through the emergency department of a tertiary hospital from 2017 to 2019, predicting 90-day all-cause mortality based on patient demographics, clinicopathological features, and historical data. The results of the C-index indicate that deep learning achieved comparable performance, with DeepSurv producing the best discrimination (DeepSurv: 0.893; CoxTime: 0.892; DeepHit: 0.891). The calibration of DeepSurv (IBS: 0.041) performed the best, followed by RSF (IBS: 0.042) and GBM (IBS: 0.0421), all using the full variables. Moreover, AutoScore-Survival, using a minimal variable subset, is easy to interpret, and can achieve good discrimination and calibration (C-index: 0.867; IBS: 0.044). While all models were satisfactory, DeepSurv exhibited the best discrimination and calibration. In addition, AutoScore-Survival offers a more parsimonious model and excellent interpretability.

cs.LG↗

Generative Artificial Intelligence in Healthcare: Ethical Considerations and Assessment Checklist

The widespread use of ChatGPT and other emerging technology powered by generative artificial intelligence (GenAI) has drawn much attention to potential ethical issues, especially in high-stakes applications such as healthcare, but ethical discussions are yet to translate into operationalisable solutions. Furthermore, ongoing ethical discussions often neglect other types of GenAI that have been used to synthesise data (e.g., images) for research and practical purposes, which resolved some ethical issues and exposed others. We conduct a scoping review of ethical discussions on GenAI in healthcare to comprehensively analyse gaps in the current research, and further propose to reduce the gaps by developing a checklist for comprehensive assessment and transparent documentation of ethical discussions in GenAI research. The checklist can be readily integrated into the current peer review and publication system to enhance GenAI research, and may be used for ethics-related disclosures for GenAI-powered products, healthcare applications of such products and beyond.

cs.LG↗

Fine-tuning Large Language Model (LLM) Artificial Intelligence Chatbots in Ophthalmology and LLM-based evaluation using GPT-4

Purpose: To assess the alignment of GPT-4-based evaluation to human clinician experts, for the evaluation of responses to ophthalmology-related patient queries generated by fine-tuned LLM chatbots. Methods: 400 ophthalmology questions and paired answers were created by ophthalmologists to represent commonly asked patient questions, divided into fine-tuning (368; 92%), and testing (40; 8%). We find-tuned 5 different LLMs, including LLAMA2-7b, LLAMA2-7b-Chat, LLAMA2-13b, and LLAMA2-13b-Chat. For the testing dataset, additional 8 glaucoma QnA pairs were included. 200 responses to the testing dataset were generated by 5 fine-tuned LLMs for evaluation. A customized clinical evaluation rubric was used to guide GPT-4 evaluation, grounded on clinical accuracy, relevance, patient safety, and ease of understanding. GPT-4 evaluation was then compared against ranking by 5 clinicians for clinical alignment. Results: Among all fine-tuned LLMs, GPT-3.5 scored the highest (87.1%), followed by LLAMA2-13b (80.9%), LLAMA2-13b-chat (75.5%), LLAMA2-7b-Chat (70%) and LLAMA2-7b (68.8%) based on the GPT-4 evaluation. GPT-4 evaluation demonstrated significant agreement with human clinician rankings, with Spearman and Kendall Tau correlation coefficients of 0.90 and 0.80 respectively; while correlation based on Cohen Kappa was more modest at 0.50. Notably, qualitative analysis and the glaucoma sub-analysis revealed clinical inaccuracies in the LLM-generated responses, which were appropriately identified by the GPT-4 evaluation. Conclusion: The notable clinical alignment of GPT-4 evaluation highlighted its potential to streamline the clinical evaluation of LLM chatbot responses to healthcare-related queries. By complementing the existing clinician-dependent manual grading, this efficient and automated evaluation could assist the validation of future developments in LLM applications for healthcare.

cs.AI↗

Mesh-robust stability and convergence of variable-step deferred correction methods based on the BDF2 formula

We provide a new theoretical framework for the variable-step deferred correction (DC) methods based on the well-known BDF2 formula. By using the discrete orthogonal convolution kernels, some high-order BDF2-DC methods are proven to be stable on arbitrary time grids according to the recent definition of stability (SINUM, 60: 2253-2272). It significantly relaxes the existing step-ratio restrictions for the BDF2-DC methods (BIT, 62: 1789-1822). The associated sharp error estimates are established by taking the numerical effects of the starting approximations into account, and they suggest that the BDF2-DC methods have no aftereffect, that is, the lower-order starting scheme for the BDF2 scheme will not cause a loss in the accuracy of the high-order BDF2-DC methods. Extensive tests on the graded and random time meshes are presented to support the new theory.

math.NA↗

Balanced Quantum Hall Resistor

The quantum anomalous Hall effect in magnetic topological insulators has been recognized as a promising platform for applications in quantum metrology. The primary reason for this is the electronic conductance quantization at zero external magnetic field, which allows to combine it with the quantum standard of voltage. Here we demonstrate a measurement scheme that increases the robustness of the zero magnetic field quantum anomalous Hall resistor, allowing for higher operational currents. This is achieved by simultaneous current injection into the two disconnected perimeters of a multi-terminal Corbino device to balance the electrochemical potential between the edges, screening the electric field that drives back-scattering through the bulk, and thus improving the stability of the quantization at increased currents. This approach is not only applicable to devices based on the quantum anomalous Hall effect, but more generally can also be applied to existing quantum resistance standards that rely on the integer quantum Hall effect.

cond-mat.mes-hall↗

Development and Testing of Retrieval Augmented Generation in Large Language Models -- A Case Study Report

Purpose: Large Language Models (LLMs) hold significant promise for medical applications. Retrieval Augmented Generation (RAG) emerges as a promising approach for customizing domain knowledge in LLMs. This case study presents the development and evaluation of an LLM-RAG pipeline tailored for healthcare, focusing specifically on preoperative medicine. Methods: We developed an LLM-RAG model using 35 preoperative guidelines and tested it against human-generated responses, with a total of 1260 responses evaluated. The RAG process involved converting clinical documents into text using Python-based frameworks like LangChain and Llamaindex, and processing these texts into chunks for embedding and retrieval. Vector storage techniques and selected embedding models to optimize data retrieval, using Pinecone for vector storage with a dimensionality of 1536 and cosine similarity for loss metrics. Human-generated answers, provided by junior doctors, were used as a comparison. Results: The LLM-RAG model generated answers within an average of 15-20 seconds, significantly faster than the 10 minutes typically required by humans. Among the basic LLMs, GPT4.0 exhibited the best accuracy of 80.1%. This accuracy was further increased to 91.4% when the model was enhanced with RAG. Compared to the human-generated instructions, which had an accuracy of 86.3%, the performance of the GPT4.0 RAG model demonstrated non-inferiority (p=0.610). Conclusions: In this case study, we demonstrated a LLM-RAG model for healthcare implementation. The pipeline shows the advantages of grounded knowledge, upgradability, and scalability as important aspects of healthcare LLM deployment.

cs.CL↗

Some Finite-Sample Results on the Hausman Test

This paper shows that the endogeneity test using the control function approach in linear instrumental variable models is a variant of the Hausman test. Moreover, we find that the test statistics used in these tests can be numerically ordered, indicating their relative power properties in finite samples.

econ.EM↗

Multiple Threshold Schemes Under The Weak Secure Condition

In this paper, we consider the case that sharing many secrets among a set of participants using the threshold schemes. All secrets are assumed to be statistically independent and the weak secure condition is focused on. Under such circumstances we investigate the infimum of the (average) information ratio and the (average) randomness ratio for any structure pair which consists of the number of the participants and the threshold values of all secrets. For two structure pairs such that the two numbers of the participants are the same and the two arrays of threshold values have the subset relationship, two leading corollaries are proved following two directions. More specifically, the bound related to the lengths of shares, secrets and randomness for the complex structure pair can be truncated for the simple one; and the linear schemes for the simple structure pair can be combined independently to be a multiple threshold scheme for the complex one. The former corollary is useful for the converse part and the latter one is helpful for the achievability part. Three new bounds special for the case that the number of secrets corresponding to the same threshold value $ t $ is lager than $ t $ and two novel linear schemes modified from the Vandermonde matrix for two similar cases are presented. Then come the optimal results for the average information ratio, the average randomness ratio and the randomness ratio. We introduce a tiny example to show that there exists another type of bound that may be crucial for the information ratio, to which we only give optimal results in three cases.

cs.IT↗

A Cyclic Placement Strategy for Multi-access Coded Caching

We investigate the multi-access coded caching problem, which involves $N$ files, $K$ users, and $K$ caches in this paper. Each user can access $L$ adjacent caches in a cyclic manner. We present a coded placement scheme for the case of cache $M=\frac{K-1}{KL}$, when $\frac{K-1}{L}$ is an integer. The scheme is based on coded placement and involves cyclic placement in caches. In many parameter settings, our scheme achieves a lower transmission rate compared to schemes without coded placement. Additionally, the achieved transmission rate of the proposed scheme is optimal when $L=K-1$ and $N\leq K$.

cs.IT↗

Explosive Nucleosynthesis in Core-Collapse Type II Supernovae: Insights from new C, N, Si, and Al-Mg isotopic compositions of presolar grains

We report C, N, Si, and Al-Mg isotope data for 39 presolar X silicon carbide (SiC) and four silicon nitride grains - a group of presolar grains that condensed in the remnants of core-collapse Type II supernovae (CCSNe) - isolated from the Murchison meteorite. Energy dispersive X-ray (EDX) data were used to determine the Mg and Al contents of the X SiC grains for comparison with the Mg/Al ratios determined by secondary ion mass spectroscopy (SIMS). Previous SIMS studies have used O-rich standards in the absence of alternatives. In this study, the correlated isotopic and elemental data of the X SiC grains enabled accurate determination of the initial 26Al/27Al ratios for the grains. Our new grain data suggest that (i) the literature data for X grains are affected to varying degrees by asteroidal/terrestrial contamination, and (ii) the Al/Mg ratios in SiC are a factor of two (with +/-6% 1 sigma uncertainties) lower than estimated based on the SIMS analyses that used O-rich standards. The lowered Al/Mg ratios result in proportionally higher inferred initial 26Al/27Al ratios for presolar SiC grains. In addition, the suppression of asteroidal/terrestrial contamination in this study leads to the observation of negative trends for 12C/13C-30Si/28Si and 26Al/27Al-30Si/28Si among our CCSN grains. We discuss these isotope trends in the light of explosive CCSN nucleosynthesis models, based on which we provide new insights into several non-traditional CCSN nucleosynthesis processes, including explosive H burning, the existence of a C/Si zone in the outer regions of CCSNe, and neutrino-nucleus reactions in deep CCSN regions.

astro-ph.SR↗

Transmission line condition prediction based on semi-supervised learning

Transmission line state assessment and prediction are of great significance for the rational formulation of operation and maintenance strategy and improvement of operation and maintenance level. Aiming at the problem that existing models cannot take into account the robustness and data demand, this paper proposes a state prediction method based on semi-supervised learning. Firstly, for the expanded feature vector, the regular matrix is used to fill in the missing data, and the sparse coding problem is solved by representation learning. Then, with the help of a small number of labelled samples to initially determine the category centers of line segments in different defective states. Finally, the estimated parameters of the model are corrected using unlabeled samples. Example analysis shows that this method can improve the recognition accuracy and use data more efficiently than the existing models.

eess.SP↗

Leveraging Anatomical Constraints with Uncertainty for Pneumothorax Segmentation

Pneumothorax is a medical emergency caused by abnormal accumulation of air in the pleural space - the potential space between the lungs and chest wall. On 2D chest radiographs, pneumothorax occurs within the thoracic cavity and outside of the mediastinum and we refer to this area as "lung+ space". While deep learning (DL) has increasingly been utilized to segment pneumothorax lesions in chest radiographs, many existing DL models employ an end-to-end approach. These models directly map chest radiographs to clinician-annotated lesion areas, often neglecting the vital domain knowledge that pneumothorax is inherently location-sensitive. We propose a novel approach that incorporates the lung+ space as a constraint during DL model training for pneumothorax segmentation on 2D chest radiographs. To circumvent the need for additional annotations and to prevent potential label leakage on the target task, our method utilizes external datasets and an auxiliary task of lung segmentation. This approach generates a specific constraint of lung+ space for each chest radiograph. Furthermore, we have incorporated a discriminator to eliminate unreliable constraints caused by the domain shift between the auxiliary and target datasets. Our results demonstrated significant improvements, with average performance gains of 4.6%, 3.6%, and 3.3% regarding Intersection over Union (IoU), Dice Similarity Coefficient (DSC), and Hausdorff Distance (HD). Our research underscores the significance of incorporating medical domain knowledge about the location-specific nature of pneumothorax to enhance DL-based lesion segmentation.

eess.IV↗

Federated Learning for Clinical Structured Data: A Benchmark Comparison of Engineering and Statistical Approaches

Federated learning (FL) has shown promising potential in safeguarding data privacy in healthcare collaborations. While the term "FL" was originally coined by the engineering community, the statistical field has also explored similar privacy-preserving algorithms. Statistical FL algorithms, however, remain considerably less recognized than their engineering counterparts. Our goal was to bridge the gap by presenting the first comprehensive comparison of FL frameworks from both engineering and statistical domains. We evaluated five FL frameworks using both simulated and real-world data. The results indicate that statistical FL algorithms yield less biased point estimates for model coefficients and offer convenient confidence interval estimations. In contrast, engineering-based methods tend to generate more accurate predictions, sometimes surpassing central pooled and statistical FL models. This study underscores the relative strengths and weaknesses of both types of methods, emphasizing the need for increased awareness and their integration in future FL applications.

cs.LG↗

Statistical CSI Based Beamforming for Reconfigurable Intelligent Surface Aided MISO Systems with Channel Correlation

Reconfigurable intelligent surface (RIS) is a promising candidate technology of the upcoming Sixth Generation (6G) communication system for its ability to provide unprecedented spectral and energy efficiency increment through passive beamforming. However, it is challenging to obtain instantaneous channel state information (I-CSI) for RIS, which obliges us to use statistical channel state information (S-CSI) to achieve passive beamforming. In this paper, RIS-aided multiple-input single-output (MISO) multi-user downlink communication system with correlated channels is investigated. Then, we formulate the problem of joint beamforming design at the AP and RIS to maximize the sum ergodic spectral efficiency (ESE) of all users to improve the network capacity. Since it is too hard to compute sum ESE, an ESE approximation is adopted to reformulate the problem into a more tractable form. Then, we present two joint beamforming algorithms, namely the singular value decomposition-gradient descent (SVD-GD) algorithm and the fractional programming-gradient descent (FP-GD) algorithm. Simulation results show the effectiveness of our proposed algorithms and validate that 2-bits quantizer is enough for RIS phase shifts implementation.

cs.IT↗

Channel Estimation for Reconfigurable Intelligent Surface-Aided Multiuser Communication Systems Exploiting Statistical CSI of Correlated RIS-User Channels

Reconfigurable intelligent surface (RIS) is a promising candidate technology for the upcoming Sixth Generation (6G) communication system for its ability to manipulate the wireless communication environment by controlling the coefficients of reflection elements (REs). However, since the RIS usually consists of a large number of passive REs, the pilot overhead for channel estimation in the RIS-aided system is prohibitively high. In this paper, the channel estimation problem for a RIS-aided multi-user multiple-input-single-output (MISO) communication system with clustered users is investigated. First, to describe the correlated feature for RIS-user channels, a beam domain channel model is developed for RIS-user channels. Then, a pilot reuse strategy is put forward to reduce the pilot overhead and decompose the channel estimation problem into several subproblems. Finally, by leveraging the correlated nature of RIS-user channels, an eigenspace projection (EP) algorithm is proposed to solve each subproblem respectively. Simulation results show that the proposed EP channel estimation scheme can achieve accurate channel estimation with lower pilot overhead than existing schemes.

cs.IT↗

Three-user D2D Coded Caching with Two Random Requesters and One Sender

In device-to-device (D2D) coded caching problems, it is possible that not all users will make file requests in the delivery phase. Hence, we propose a new D2D centralized coded caching problem, named the 3-user D2D coded caching with two random requesters and one sender (2RR1S), where in the delivery phase, any two of the three users will make file requests, and the user that does not make any file request is the designated sender. We find the optimal caching and delivery scheme, denoted as the 2RRIS scheme, for any number of files N by proving matching converse and achievability results. It is shown that coded cache placement is needed to achieve the optimal performance. Furthermore, the optimal rate-memory tradeoff has a uniform expression for N>=4 and different expressions for N=2 and 3. To examine the usefulness of the proposed model and scheme, we adapt the 2RR1S scheme to three scenarios. The first one is the 3-user D2D coded caching model proposed by Ji et al. By characterizing the optimal rate-memory tradeoff for the 3-user D2D coded caching when N=2, which was previously unknown, we show that the adapted 2RR1S scheme is in fact optimal for the 3-user D2D coded caching problem when N=2 and the cache size is medium. The benefit comes from coded cache placement which is missing from existing D2D coded caching schemes. The second scenario is where in the delivery phase, each user makes a file request randomly and independently with the same probability p. We call this model the request-random D2D coded caching problem. Adapting the 2RR1S scheme to this scenario, we show the superiority of our adapted scheme over other existing D2D coded caching schemes for medium to large cache size. The third scenario is the K-user D2D coded caching with K-s random requesters and s senders problem, for which an achievability result is obtained by generalizing the 2RR1S scheme.

cs.IT↗