arXiv subjects

Oisin Mac Aodha

Publications and source records attributed to Oisin Mac Aodha.

At least 37 records · Page 2Linked to original sources

arXiv2025

Interpretable Text-Guided Image Clustering via Iterative Search

Traditional clustering methods aim to group unlabeled data points based on their similarity to each other. However, clustering, in the absence of additional information, is an ill-posed problem as there may be many different, yet equally valid, ways to partition a dataset. Distinct users may want to use different criteria to form clusters in the same data, e.g. shape v.s. color. Recently introduced text-guided image clustering methods aim to address this ambiguity by allowing users to specify the criteria of interest using natural language instructions. This instruction provides the necessary context and control needed to obtain clusters that are more aligned with the users' intent. We propose a new text-guided clustering approach named ITGC that uses an iterative discovery process, guided by an unsupervised clustering objective, to generate interpretable visual concepts that better capture the criteria expressed in a user's instructions. We report superior performance compared to existing methods across a wide variety of image clustering and fine-grained classification benchmarks.

cs.CV↗

arXiv2025

Sample-efficient Integration of New Modalities into Large Language Models

Multimodal foundation models can process several modalities. However, since the space of possible modalities is large and evolving over time, training a model from scratch to encompass all modalities is unfeasible. Moreover, integrating a modality into a pre-existing foundation model currently requires a significant amount of paired data, which is often not available for low-resource modalities. In this paper, we introduce a method for sample-efficient modality integration (SEMI) into Large Language Models (LLMs). To this end, we devise a hypernetwork that can adapt a shared projector -- placed between modality-specific encoders and an LLM -- to any modality. The hypernetwork, trained on high-resource modalities (i.e., text, speech, audio, video), is conditioned on a few samples from any arbitrary modality at inference time to generate a suitable adapter. To increase the diversity of training modalities, we artificially multiply the number of encoders through isometric transformations. We find that SEMI achieves a significant boost in sample efficiency during few-shot integration of new modalities (i.e., satellite images, astronomical images, inertial measurements, and molecules) with encoders of arbitrary embedding dimensionality. For instance, to reach the same accuracy as 32-shot SEMI, training the projector from scratch needs 64$\times$ more data. As a result, SEMI holds promise to extend the modality coverage of foundation models.

cs.CL↗

arXiv2025

WildSAT: Learning Satellite Image Representations from Wildlife Observations

Species distributions encode valuable ecological and environmental information, yet their potential for guiding representation learning in remote sensing remains underexplored. We introduce WildSAT, which pairs satellite images with millions of geo-tagged wildlife observations readily-available on citizen science platforms. WildSAT employs a contrastive learning approach that jointly leverages satellite images, species occurrence maps, and textual habitat descriptions to train or fine-tune models. This approach significantly improves performance on diverse satellite image recognition tasks, outperforming both ImageNet-pretrained models and satellite-specific baselines. Additionally, by aligning visual and textual information, WildSAT enables zero-shot retrieval, allowing users to search geographic locations based on textual descriptions. WildSAT surpasses recent cross-modal learning methods, including approaches that align satellite images with ground imagery or wildlife photos, demonstrating the advantages of our approach. Finally, we analyze the impact of key design choices and highlight the broad applicability of WildSAT to remote sensing and biodiversity monitoring.

cs.CV↗

arXiv2025

The Automated LLM Speedrunning Benchmark: Reproducing NanoGPT Improvements

Rapid advancements in large language models (LLMs) have the potential to assist in scientific progress. A critical capability toward this endeavor is the ability to reproduce existing work. To evaluate the ability of AI agents to reproduce results in an active research area, we introduce the Automated LLM Speedrunning Benchmark, leveraging the research community contributions on the NanoGPT speedrun, a competition to train a GPT-2 model in the shortest time. Each of the 19 speedrun tasks provides the agent with the previous records training script, optionally paired with one of three hint formats, ranging from pseudocode to paper-like descriptions of the new records improvements. Records execute quickly by design and speedrun improvements encompass diverse code-level changes, ranging from high-level algorithmic advancements to hardware-aware optimizations. These features make the benchmark both accessible and realistic for the frontier problem of improving LLM training. We find that recent reasoning LLMs combined with SoTA scaffolds struggle to reimplement already-known innovations in our benchmark, even when given detailed hints. Our benchmark thus provides a simple, non-saturated measure of an LLMs ability to automate scientific reproduction, a necessary (but not sufficient) skill for an autonomous research agent.

cs.AI↗

arXiv2025

Feedforward Few-shot Species Range Estimation

Knowing where a particular species can or cannot be found on Earth is crucial for ecological research and conservation efforts. By mapping the spatial ranges of all species, we would obtain deeper insights into how global biodiversity is affected by climate change and habitat loss. However, accurate range estimates are only available for a relatively small proportion of all known species. For the majority of the remaining species, we typically only have a small number of records denoting the spatial locations where they have previously been observed. We outline a new approach for few-shot species range estimation to address the challenge of accurately estimating the range of a species from limited data. During inference, our model takes a set of spatial locations as input, along with optional metadata such as text or an image, and outputs a species encoding that can be used to predict the range of a previously unseen species in a feedforward manner. We evaluate our approach on two challenging benchmarks, where we obtain state-of-the-art range estimation performance, in a fraction of the compute time, compared to recent alternative approaches.

cs.CV↗

arXiv2025

Representational Similarity via Interpretable Visual Concepts

How do two deep neural networks differ in how they arrive at a decision? Measuring the similarity of deep networks has been a long-standing open question. Most existing methods provide a single number to measure the similarity of two networks at a given layer, but give no insight into what makes them similar or dissimilar. We introduce an interpretable representational similarity method (RSVC) to compare two networks. We use RSVC to discover shared and unique visual concepts between two models. We show that some aspects of model differences can be attributed to unique concepts discovered by one model that are not well represented in the other. Finally, we conduct extensive evaluation across different vision model architectures and training protocols to demonstrate its effectiveness.

cs.CV↗

arXiv2025

MVSAnywhere: Zero-Shot Multi-View Stereo

Computing accurate depth from multiple views is a fundamental and longstanding challenge in computer vision. However, most existing approaches do not generalize well across different domains and scene types (e.g. indoor vs. outdoor). Training a general-purpose multi-view stereo model is challenging and raises several questions, e.g. how to best make use of transformer-based architectures, how to incorporate additional metadata when there is a variable number of input views, and how to estimate the range of valid depths which can vary considerably across different scenes and is typically not known a priori? To address these issues, we introduce MVSA, a novel and versatile Multi-View Stereo architecture that aims to work Anywhere by generalizing across diverse domains and depth ranges. MVSA combines monocular and multi-view cues with an adaptive cost volume to deal with scale-related issues. We demonstrate state-of-the-art zero-shot depth estimation on the Robust Multi-View Depth Benchmark, surpassing existing multi-view stereo and monocular baselines.

cs.CV↗

arXiv2025

CrossSDF: 3D Reconstruction of Thin Structures From Cross-Sections

Reconstructing complex structures from planar cross-sections is a challenging problem, with wide-reaching applications in medical imaging, manufacturing, and topography. Out-of-the-box point cloud reconstruction methods can often fail due to the data sparsity between slicing planes, while current bespoke methods struggle to reconstruct thin geometric structures and preserve topological continuity. This is important for medical applications where thin vessel structures are present in CT and MRI scans. This paper introduces CrossSDF, a novel approach for extracting a 3D signed distance field from 2D signed distances generated from planar contours. Our approach makes the training of neural SDFs contour-aware by using losses designed for the case where geometry is known within 2D slices. Our results demonstrate a significant improvement over existing methods, effectively reconstructing thin structures and producing accurate 3D models without the interpolation artifacts or over-smoothing of prior approaches.

cs.CV↗

arXiv2025

DepthCues: Evaluating Monocular Depth Perception in Large Vision Models

Large-scale pre-trained vision models are becoming increasingly prevalent, offering expressive and generalizable visual representations that benefit various downstream tasks. Recent studies on the emergent properties of these models have revealed their high-level geometric understanding, in particular in the context of depth perception. However, it remains unclear how depth perception arises in these models without explicit depth supervision provided during pre-training. To investigate this, we examine whether the monocular depth cues, similar to those used by the human visual system, emerge in these models. We introduce a new benchmark, DepthCues, designed to evaluate depth cue understanding, and present findings across 20 diverse and representative pre-trained vision models. Our analysis shows that human-like depth cues emerge in more recent larger models. We also explore enhancing depth perception in large vision models by fine-tuning on DepthCues, and find that even without dense depth supervision, this improves depth estimation. To support further research, our benchmark and evaluation code will be made publicly available for studying depth perception in vision models.

cs.CV↗

arXiv2025

acoupi: An Open-Source Python Framework for Deploying Bioacoustic AI Models on Edge Devices

1. Passive acoustic monitoring (PAM) coupled with artificial intelligence (AI) is becoming an essential tool for biodiversity monitoring. Traditional PAM systems require manual data offloading and impose substantial demands on storage and computing infrastructure. The combination of on-device AI-based processing and network connectivity enables local data analysis and transmission of only relevant information, greatly reducing storage needs. However, programming these devices for robust operation is challenging, requiring expertise in embedded systems and software engineering. Despite the increase in AI-based models for bioacoustics, their full potential remains unrealized without accessible tools to deploy them on custom hardware and tailor device behaviour to specific monitoring goals. 2. To address this challenge, we develop acoupi, an open-source Python framework that simplifies the creation and deployment of smart bioacoustic devices. acoupi integrates audio recording, AI-based data processing, data management, and real-time wireless messaging into a unified and configurable framework. By modularising key elements of the bioacoustic monitoring workflow, acoupi allows users to easily customise, extend, or select specific components to fit their unique monitoring needs. 3. We demonstrate the flexibility of acoupi by integrating two bioacoustic classifiers: BirdNET, for the classification of bird species, and BatDetect2, for the classification of UK bat species. We test the reliability of acoupi over a month-long deployment of two acoupi-powered devices in a UK urban park. 4. acoupi can be deployed on low-cost hardware such as the Raspberry Pi and can be customised for various applications. acoupi standardised framework and simplified tools facilitate the adoption of AI-powered PAM systems for researchers and conservationists. acoupi is on GitHub at https://github.com/acoupi/acoupi.

cs.SD↗

arXiv2024

Combining Observational Data and Language for Species Range Estimation

Species range maps (SRMs) are essential tools for research and policy-making in ecology, conservation, and environmental management. However, traditional SRMs rely on the availability of environmental covariates and high-quality species location observation data, both of which can be challenging to obtain due to geographic inaccessibility and resource constraints. We propose a novel approach combining millions of citizen science species observations with textual descriptions from Wikipedia, covering habitat preferences and range descriptions for tens of thousands of species. Our framework maps locations, species, and text descriptions into a common space, facilitating the learning of rich spatial covariates at a global scale and enabling zero-shot range estimation from textual descriptions. Evaluated on held-out species, our zero-shot SRMs significantly outperform baselines and match the performance of SRMs obtained using tens of observations. Our approach also acts as a strong prior when combined with observational data, resulting in more accurate range estimation with less data. We present extensive quantitative and qualitative analyses of the learned representations in the context of range estimation and other spatial tasks, demonstrating the effectiveness of our approach.

cs.DB↗

arXiv2024

INQUIRE: A Natural World Text-to-Image Retrieval Benchmark

We introduce INQUIRE, a text-to-image retrieval benchmark designed to challenge multimodal vision-language models on expert-level queries. INQUIRE includes iNaturalist 2024 (iNat24), a new dataset of five million natural world images, along with 250 expert-level retrieval queries. These queries are paired with all relevant images comprehensively labeled within iNat24, comprising 33,000 total matches. Queries span categories such as species identification, context, behavior, and appearance, emphasizing tasks that require nuanced image understanding and domain expertise. Our benchmark evaluates two core retrieval tasks: (1) INQUIRE-Fullrank, a full dataset ranking task, and (2) INQUIRE-Rerank, a reranking task for refining top-100 retrievals. Detailed evaluation of a range of recent multimodal models demonstrates that INQUIRE poses a significant challenge, with the best models failing to achieve an mAP@50 above 50%. In addition, we show that reranking with more powerful multimodal models can enhance retrieval performance, yet there remains a significant margin for improvement. By focusing on scientifically-motivated ecological challenges, INQUIRE aims to bridge the gap between AI capabilities and the needs of real-world scientific inquiry, encouraging the development of retrieval systems that can assist with accelerating ecological and biodiversity research. Our dataset and code are available at https://inquire-benchmark.github.io

cs.CV↗

arXiv2024

Generating Binary Species Range Maps

Accurately predicting the geographic ranges of species is crucial for assisting conservation efforts. Traditionally, range maps were manually created by experts. However, species distribution models (SDMs) and, more recently, deep learning-based variants offer a potential automated alternative. Deep learning-based SDMs generate a continuous probability representing the predicted presence of a species at a given location, which must be binarized by setting per-species thresholds to obtain binary range maps. However, selecting appropriate per-species thresholds to binarize these predictions is non-trivial as different species can require distinct thresholds. In this work, we evaluate different approaches for automatically identifying the best thresholds for binarizing range maps using presence-only data. This includes approaches that require the generation of additional pseudo-absence data, along with ones that only require presence data. We also propose an extension of an existing presence-only technique that is more robust to outliers. We perform a detailed evaluation of different thresholding techniques on the tasks of binary range estimation and large-scale fine-grained visual classification, and we demonstrate improved performance over existing pseudo-absence free approaches using our method.

q-bio.QM↗

arXiv2024

Self-Supervised Multimodal Learning: A Survey

Multimodal learning, which aims to understand and analyze information from multiple modalities, has achieved substantial progress in the supervised regime in recent years. However, the heavy dependence on data paired with expensive human annotations impedes scaling up models. Meanwhile, given the availability of large-scale unannotated data in the wild, self-supervised learning has become an attractive strategy to alleviate the annotation bottleneck. Building on these two directions, self-supervised multimodal learning (SSML) provides ways to learn from raw multimodal data. In this survey, we provide a comprehensive review of the state-of-the-art in SSML, in which we elucidate three major challenges intrinsic to self-supervised learning with multimodal data: (1) learning representations from multimodal data without labels, (2) fusion of different modalities, and (3) learning with unaligned data. We then detail existing solutions to these challenges. Specifically, we consider (1) objectives for learning from multimodal unlabeled data via self-supervision, (2) model architectures from the perspective of different multimodal fusion strategies, and (3) pair-free learning strategies for coarse-grained and fine-grained alignment. We also review real-world applications of SSML algorithms in diverse fields such as healthcare, remote sensing, and machine translation. Finally, we discuss challenges and future directions for SSML. A collection of related resources can be found at: https://github.com/ys-zong/awesome-self-supervised-multimodal-learning.

cs.LG↗

arXiv2024

Vision Learners Meet Web Image-Text Pairs

Many self-supervised learning methods are pre-trained on the well-curated ImageNet-1K dataset. In this work, given the excellent scalability of web data, we consider self-supervised pre-training on noisy web sourced image-text paired data. First, we conduct a benchmark study of representative self-supervised pre-training methods on large-scale web data in a like-for-like setting. We compare a range of methods, including single-modal ones that use masked training objectives and multi-modal ones that use image-text constrastive training. We observe that existing multi-modal methods do not outperform their single-modal counterparts on vision transfer learning tasks. We derive an information-theoretical view to explain these benchmark results, which provides insight into how to design a novel vision learner. Inspired by this insight, we present a new visual representation pre-training method, MUlti-modal Generator~(MUG), that learns from scalable web sourced image-text data. MUG achieves state-of-the-art transfer performance on a variety of tasks and demonstrates promising scaling properties. Pre-trained models and code will be made public upon acceptance.

cs.CV↗

arXiv2024

Labeled Data Selection for Category Discovery

Category discovery methods aim to find novel categories in unlabeled visual data. At training time, a set of labeled and unlabeled images are provided, where the labels correspond to the categories present in the images. The labeled data provides guidance during training by indicating what types of visual properties and features are relevant for performing discovery in the unlabeled data. As a result, changing the categories present in the labeled set can have a large impact on what is ultimately discovered in the unlabeled set. Despite its importance, the impact of labeled data selection has not been explored in the category discovery literature to date. We show that changing the labeled data can significantly impact discovery performance. Motivated by this, we propose two new approaches for automatically selecting the most suitable labeled data based on the similarity between the labeled and unlabeled data. Our observation is that, unlike in conventional supervised transfer learning, the best labeled is neither too similar, nor too dissimilar, to the unlabeled categories. Our resulting approaches obtains state-of-the-art discovery performance across a range of challenging fine-grained benchmark datasets.

cs.CV↗

arXiv2024

Less is More: Discovering Concise Network Explanations

We introduce Discovering Conceptual Network Explanations (DCNE), a new approach for generating human-comprehensible visual explanations to enhance the interpretability of deep neural image classifiers. Our method automatically finds visual explanations that are critical for discriminating between classes. This is achieved by simultaneously optimizing three criteria: the explanations should be few, diverse, and human-interpretable. Our approach builds on the recently introduced Concept Relevance Propagation (CRP) explainability method. While CRP is effective at describing individual neuronal activations, it generates too many concepts, which impacts human comprehension. Instead, DCNE selects the few most important explanations. We introduce a new evaluation dataset centered on the challenging task of classifying birds, enabling us to compare the alignment of DCNE's explanations to those of human expert-defined ones. Compared to existing eXplainable Artificial Intelligence (XAI) methods, DCNE has a desirable trade-off between conciseness and completeness when summarizing network explanations. It produces 1/30 of CRP's explanations while only resulting in a slight reduction in explanation quality. DCNE represents a step forward in making neural network decisions accessible and interpretable to humans, providing a valuable tool for both researchers and practitioners in XAI and model alignment.

cs.CV↗

arXiv2024

Improving Semantic Correspondence with Viewpoint-Guided Spherical Maps

Recent progress in self-supervised representation learning has resulted in models that are capable of extracting image features that are not only effective at encoding image level, but also pixel-level, semantics. These features have been shown to be effective for dense visual semantic correspondence estimation, even outperforming fully-supervised methods. Nevertheless, current self-supervised approaches still fail in the presence of challenging image characteristics such as symmetries and repeated parts. To address these limitations, we propose a new approach for semantic correspondence estimation that supplements discriminative self-supervised features with 3D understanding via a weak geometric spherical prior. Compared to more involved 3D pipelines, our model only requires weak viewpoint information, and the simplicity of our spherical representation enables us to inject informative geometric priors into the model during training. We propose a new evaluation metric that better accounts for repeated part and symmetry-induced mistakes. We present results on the challenging SPair-71k dataset, where we show that our approach demonstrates is capable of distinguishing between symmetric views and repeated parts across many object categories, and also demonstrate that we can generalize to unseen classes on the AwA dataset.

cs.CV↗