arXiv subjects

Peter Teuben

Publications and source records attributed to Peter Teuben.

52 records · Page 3Linked to original sources

arXiv2013

Practices in source code sharing in astrophysics

While software and algorithms have become increasingly important in astronomy, the majority of authors who publish computational astronomy research do not share the source code they develop, making it difficult to replicate and reuse the work. In this paper we discuss the importance of sharing scientific source code with the entire astrophysics community, and propose that journals require authors to make their code publicly available when a paper is published. That is, we suggest that a paper that involves a computer program not be accepted for publication unless the source code becomes publicly available. The adoption of such a policy by editors, editorial boards, and reviewers will improve the ability to replicate scientific results, and will also make the computational astronomy methods more available to other researchers who wish to apply them to their data.

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arXiv2012

Bring out your codes! Bring out your codes! (Increasing Software Visibility and Re-use)

Progress is being made in code discoverability and preservation, but as discussed at ADASS XXI, many codes still remain hidden from public view. With the Astrophysics Source Code Library (ASCL) now indexed by the SAO/NASA Astrophysics Data System (ADS), the introduction of a new journal, Astronomy & Computing, focused on astrophysics software, and the increasing success of education efforts such as Software Carpentry and SciCoder, the community has the opportunity to set a higher standard for its science by encouraging the release of software for examination and possible reuse. We assembled representatives of the community to present issues inhibiting code release and sought suggestions for tackling these factors. The session began with brief statements by panelists; the floor was then opened for discussion and ideas. Comments covered a diverse range of related topics and points of view, with apparent support for the propositions that algorithms should be readily available, code used to produce published scientific results should be made available, and there should be discovery mechanisms to allow these to be found easily. With increased use of resources such as GitHub (for code availability), ASCL (for code discovery), and a stated strong preference from the new journal Astronomy & Computing for code release, we expect to see additional progress over the next few years.

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arXiv2012

Searching for Non-axisymmetries in NGC 6503: A Weak End-on Bar

The isolation, simple apparent structure, and low luminosity of the nearby spiral galaxy NGC 6503 make it an ideal candidate for an in-depth kinematic and photometric study. We introduce a new publicly available code, DiskFit, that implements procedures for fitting non-axisymmetries in either kinematic or photometric data. We use DiskFit to analyze new Halpha and CO velocity field data as well as HI kinematics from Greisen et al. to search for non-circular motions in the disc of NGC 6503. We find NGC 6503 to have remarkably regular gas kinematics that are well-described by rotation only. We also use DiskFit and a new Ks-band image of NGC 6503 to constrain photometric models of the disc, bar and bulge. We find the galaxy to be photometrically dominated by the disc. We find NGC 6503 to contain a faint bar and an exponential bulge which together contribute only ~5% of the total galaxy light. The combination of our kinematic and photometric DiskFit models suggest that NGC 6503 contains a weak, end-on bar that may have produced its Type II surface brightness profile but is unlikely to be responsible for its strong sigma-drop.

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arXiv2012

Practices in Code Discoverability

Much of scientific progress now hinges on the reliability, falsifiability and reproducibility of computer source codes. Astrophysics in particular is a discipline that today leads other sciences in making useful scientific components freely available online, including data, abstracts, preprints, and fully published papers, yet even today many astrophysics source codes remain hidden from public view. We review the importance and history of source codes in astrophysics and previous efforts to develop ways in which information about astrophysics codes can be shared. We also discuss why some scientist coders resist sharing or publishing their codes, the reasons for and importance of overcoming this resistance, and alert the community to a reworking of one of the first attempts for sharing codes, the Astrophysics Source Code Library (ASCL). We discuss the implementation of the ASCL in an accompanying poster paper. We suggest that code could be given a similar level of referencing as data gets in repositories such as ADS.

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arXiv2012

Practices in Code Discoverability: Astrophysics Source Code Library

Here we describe the Astrophysics Source Code Library (ASCL), which takes an active approach to sharing astrophysical source code. ASCL's editor seeks out both new and old peer-reviewed papers that describe methods or experiments that involve the development or use of source code, and adds entries for the found codes to the library. This approach ensures that source codes are added without requiring authors to actively submit them, resulting in a comprehensive listing that covers a significant number of the astrophysics source codes used in peer-reviewed studies. The ASCL now has over 340 codes in it and continues to grow. In 2011, the ASCL (http://ascl.net) has on average added 19 new codes per month. An advisory committee has been established to provide input and guide the development and expansion of the new site, and a marketing plan has been developed and is being executed. All ASCL source codes have been used to generate results published in or submitted to a refereed journal and are freely available either via a download site or from an identified source. This paper provides the history and description of the ASCL. It lists the requirements for including codes, examines the benefits of the ASCL, and outlines some of its future plans.

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arXiv2012

MIS: a MIRIAD Interferometry Singledish toolkit

Building on the "drPACS" contribution at ADASS XX of a simple Unix pipeline infrastructure, we implemented a pipeline toolkit using the package MIRIAD to combine Interferometric and Single Dish data (MIS). This was prompted by our observations made with the Combined Array For Research in Millimeter-wave Astronomy (CARMA) interferometer of the star-forming region NGC 1333, a large survey highlighting the new 23-element and singledish observing modes. The project consists of 20 CARMA datasets each containing interferometric as well as simultaneously obtained single dish data, for 3 molecular spectral lines and continuum, in 527 different pointings, covering an area of about 8 by 11 arcminutes. A small group of collaborators then shared this toolkit and their parameters via CVS, and scripts were developed to ensure uniform data reduction across the group. The pipeline was run end-to-end each night as new observations were obtained, producing maps that contained all the data to date. We will show examples of the scripts and data products. This approach could serve as a model for repeated calibration and mapping of large mixed-mode correlation datasets from ALMA.

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arXiv2008

Athena: A New Code for Astrophysical MHD

A new code for astrophysical magnetohydrodynamics (MHD) is described. The code has been designed to be easily extensible for use with static and adaptive mesh refinement. It combines higher-order Godunov methods with the constrained transport (CT) technique to enforce the divergence-free constraint on the magnetic field. Discretization is based on cell-centered volume-averages for mass, momentum, and energy, and face-centered area-averages for the magnetic field. Novel features of the algorithm include (1) a consistent framework for computing the time- and edge-averaged electric fields used by CT to evolve the magnetic field from the time- and area-averaged Godunov fluxes, (2) the extension to MHD of spatial reconstruction schemes that involve a dimensionally-split time advance, and (3) the extension to MHD of two different dimensionally-unsplit integration methods. Implementation of the algorithm in both C and Fortran95 is detailed, including strategies for parallelization using domain decomposition. Results from a test suite which includes problems in one-, two-, and three-dimensions for both hydrodynamics and MHD are given, not only to demonstrate the fidelity of the algorithms, but also to enable comparisons to other methods. The source code is freely available for download on the web.

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arXiv2007

The Spitzer c2d Survey of Large, Nearby, Interstellar Clouds: VII. Ophiuchus Observed with MIPS

We present maps of 14.4 deg^2 of the Ophiuchus dark clouds observed by the Spitzer Space Telescope Multiband Imaging Photometer for Spitzer (MIPS). These high quality maps depict both numerous point sources as well as extended dust emission within the star-forming and non-star-forming portions of these clouds. Using PSF-fitting photometry, we detect 5779 sources at 24 um and 81 sources at 70 um at the 10 sigma level of significance. Three hundred twenty-three candidate young stellar objects (YSOs) were identified according to their positions on the MIPS/2MASS K versus K$-$[24] color-magnitude diagrams as compared to 24 um detections in the SWIRE extragalactic survey. We find that more than half of the YSO candidates, and almost all the ones with protostellar Class I spectral energy distributions, are confined to the known cluster and aggregates.

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arXiv2007

The Spitzer c2d Survey of Large, Nearby, Interstellar Clouds. IV. Lupus Observed with MIPS

We present maps of 7.78 square degrees of the Lupus molecular cloud complex at 24, 70, and $160\:μ$m. They were made with the Spitzer Space Telescope's Multiband Imaging Photometer for Spitzer (MIPS) instrument as part of the Spitzer Legacy Program, ``From Molecular Cores to Planet-Forming Disks'' (c2d). The maps cover three separate regions in Lupus, denoted I, III, and IV. We discuss the c2d pipeline and how our data processing differs from it. We compare source counts in the three regions with two other data sets and predicted star counts from the Wainscoat model. This comparison shows the contribution from background galaxies in Lupus I. We also create two color magnitude diagrams using the 2MASS and MIPS data. From these results, we can identify background galaxies and distinguish them from probable young stellar objects. The sources in our catalogs are classified based on their spectral energy distribution (SED) from 2MASS and Spitzer wavelengths to create a sample of young stellar object candidates. From 2MASS data, we create extinction maps for each region and note a strong corresponence between the extinction and the $160\:μ$m emission. The masses we derived in each Lupus cloud from our extinction maps are compared to masses estimated from $^{13}$CO and C$^{18}$O and found to be similar to our extinction masses in some regions, but significantly different in others. Finally, based on our color-magnitude diagrams, we selected 12 of our reddest candidate young stellar objects for individual discussion. Five of the 12 appear to be newly-discovered YSOs.

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arXiv2006

The Spitzer c2d survey of Large, Nearby, Interstellar Clouds. V. Chamaeleon II Observed with IRAC

We present IRAC (3.6, 4.5, 5.8, and 8.0 micron) observations of the Chamaeleon II molecular cloud. The observed area covers about 1 square degree defined by $A_V >2$. Analysis of the data in the 2005 c2d catalogs reveals a small number of sources (40) with properties similar to those of young stellaror substellar objects (YSOs). The surface density of these YSO candidates is low, and contamination by background galaxies appears to be substantial, especially for sources classified as Class I or flat SED. We discuss this problem in some detail and conclude that very few of the candidate YSOs in early evolutionary stages are actually in the Cha II cloud. Using a refined set of criteria, we define a smaller, but more reliable, set of 24 YSO candidates.

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arXiv2006

The Spitzer c2d Survey of Nearby Dense Cores: II: Discovery of a Low Luminosity Object in the "Evolved Starless Core" L1521F

We present Spitzer Space Telescope observations of the "evolved starless core" L1521F which reveal the presence of a very low luminosity object (L < 0.07 Lsun). The object, L1521F-IRS, is directly detected at mid-infrared wavelengths (>5 micron) but only in scattered light at shorter infrared wavelengths, showing a bipolar nebula oriented east-west which is probably tracing an outflow cavity. The nebula strongly suggests that L1521F-IRS is embedded in the L1521F core. Thus L1521F-IRS is similar to the recently discovered L1014-IRS and the previously known IRAM 04191 in its substellar luminosity and dense core environment. However these objects differ significantly in their core density, core chemistry, and outflow properties, and some may be destined to be brown dwarfs rather than stars.

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arXiv2002

Velocity Fields of Disk Galaxies

Two dimensional velocity fields have been an important tool for nearly 30 years and are instrumental in understanding galactic mass distributions and deviations from an ideal galactic disk. Recently a number of new instruments have started to produce more detailed velocity fields of the disks and nuclear regions of galaxies. This paper summarizes some of the underlying techniques for constructing velocity fields and deriving rotation curves. It also urges to simulate observations from the data-cube stage to reject subtle biases in derived quantities such as rotation curves.

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arXiv2002

Simulation Software: Then, Now and Virtual Observatory

Like hardware, evolution of software has had a major impact on the field of particle simulations. This paper illustrates how simulation software has evolved, and where it can go. In addition, with the various ongoing Virtual Observatory efforts, producers of theory data should think more about sharing their data! Some examples are given of what we can do with our data and how to share it with our colleagues and observers. In the Appendix we summarize the findings of an informal data and software usage survey that we took during this conference.

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arXiv2001

Theory in a Virtual Observatory

During the last couple of years, observers have started to make plans for a Virtual Observatory, as a federation of existing data bases, connected through levels of software that enable rapid searches, correlations, and various forms of data mining. We propose to extend the notion of a Virtual Observatory by adding archives of simulations, together with interactive query and visualization capabilities, as well as ways to simulate observations of simulations in order to compare them with observations. For this purpose, we have already organized two small workshops, earlier in 2001, in Tucson and Aspen. We have also provided concrete examples of theory data, designed to be federated with a Virtual Observatory. These data stem from a project to construct an archive for our large-scale simulations using the GRAPE-6 (a 32-Teraflops special purpose computer for stellar dynamics). We are constructing interfaces by which remote observers can observe these simulations. In addition, these data will enable detailed comparisons between different simulations.

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arXiv2001

Immersive 4D Interactive Visualization of Large-Scale Simulations

In dense clusters a bewildering variety of interactions between stars can be observed, ranging from simple encounters to collisions and other mass-transfer encounters. With faster and special-purpose computers like GRAPE, the amount of data per simulation is now exceeding 1TB. Visualization of such data has now become a complex 4D data-mining problem, combining space and time, and finding interesting events in these large datasets. We have recently starting using the virtual reality simulator, installed in the Hayden Planetarium in the American Museum for Natural History, to tackle some of these problem. This work (http://www.astro.umd.edu/nemo/amnh/) reports on our first ``observations'', modifications needed for our specific experiments, and perhaps field ideas for other fields in science which can benefit from such immersion. We also discuss how our normal analysis programs can be interfaced with this kind of visualization.

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arXiv1998

The simultaneous spectrum of Sgr A* from 20cm to 1mm and the nature of the mm-excess

We report results from a multiwavelength campaign to measure the simultaneous spectrum of the super-massive black hole candidate Sgr A* in the Galactic Center from cm to mm-wavelengths using the VLA, BIMA, the Nobeyama 45m, and the IRAM 30m telescopes. The observations confirm that the previously detected mm-excess is an intrinsic feature of the spectrum of Sgr A*. The excess can be interpreted as due to the presence of an ultra-compact component of relativistic plasma with a size of a few Schwarzschild radii near the black hole. If so, Sgr A* might offer the unique possibility to image the putative black hole against the background of this component with future mm-VLBI experiments.

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