arXiv subjects

Philipp Mayr

Publications and source records attributed to Philipp Mayr.

At least 37 records · Page 2Linked to original sources

arXiv2024

Reference Coverage Analysis of OpenAlex compared to Web of Science and Scopus

OpenAlex is a promising open source of scholarly metadata, and competitor to established proprietary sources, such as the Web of Science and Scopus. As OpenAlex provides its data freely and openly, it permits researchers to perform bibliometric studies that can be reproduced in the community without licensing barriers. However, as OpenAlex is a rapidly evolving source and the data contained within is expanding and also quickly changing, the question naturally arises as to the trustworthiness of its data. In this report, we will study the reference coverage and selected metadata within each database and compare them with each other to help address this open question in bibliometrics. In our large-scale study, we demonstrate that, when restricted to a cleaned dataset of 16.8 million recent publications shared by all three databases, OpenAlex has average source reference numbers and internal coverage rates comparable to both Web of Science and Scopus. We further analyse the metadata in OpenAlex, the Web of Science and Scopus by journal, finding a similarity in the distribution of source reference counts in the Web of Science and Scopus as compared to OpenAlex. We also demonstrate that the comparison of other core metadata covered by OpenAlex shows mixed results when broken down by journal, capturing more ORCID identifiers, fewer abstracts and a similar number of Open Access status indicators per article when compared to both the Web of Science and Scopus.

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arXiv2024

Utilizing Large Language Models for Named Entity Recognition in Traditional Chinese Medicine against COVID-19 Literature: Comparative Study

Objective: To explore and compare the performance of ChatGPT and other state-of-the-art LLMs on domain-specific NER tasks covering different entity types and domains in TCM against COVID-19 literature. Methods: We established a dataset of 389 articles on TCM against COVID-19, and manually annotated 48 of them with 6 types of entities belonging to 3 domains as the ground truth, against which the NER performance of LLMs can be assessed. We then performed NER tasks for the 6 entity types using ChatGPT (GPT-3.5 and GPT-4) and 4 state-of-the-art BERT-based question-answering (QA) models (RoBERTa, MiniLM, PubMedBERT and SciBERT) without prior training on the specific task. A domain fine-tuned model (GSAP-NER) was also applied for a comprehensive comparison. Results: The overall performance of LLMs varied significantly in exact match and fuzzy match. In the fuzzy match, ChatGPT surpassed BERT-based QA models in 5 out of 6 tasks, while in exact match, BERT-based QA models outperformed ChatGPT in 5 out of 6 tasks but with a smaller F-1 difference. GPT-4 showed a significant advantage over other models in fuzzy match, especially on the entity type of TCM formula and the Chinese patent drug (TFD) and ingredient (IG). Although GPT-4 outperformed BERT-based models on entity type of herb, target, and research method, none of the F-1 scores exceeded 0.5. GSAP-NER, outperformed GPT-4 in terms of F-1 by a slight margin on RM. ChatGPT achieved considerably higher recalls than precisions, particularly in the fuzzy match. Conclusions: The NER performance of LLMs is highly dependent on the entity type, and their performance varies across application scenarios. ChatGPT could be a good choice for scenarios where high recall is favored. However, for knowledge acquisition in rigorous scenarios, neither ChatGPT nor BERT-based QA models are off-the-shelf tools for professional practitioners.

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arXiv2024

The rise of Indo-German collaborative research: 1990-2022

The study aims to highlight the growth and development of Indo-German collaborative research over the past three decades. Moreover, this study encompasses an in-depth examination of funding acknowledgements to gain valuable insights into the financial support that underpins these collaborative endeavors. Together with this paper, we provide an openly accessible dataset of Indo-German research articles for further and reproducible research activities (the "Indo-German Literature Dataset"). The data were retrieved from the Web of Science (WoS) database from the year 1990 till the 30th of November 2022. A total of 36,999 records were retrieved against the employed query. Acknowledged entities were extracted using a NER model specifically trained for this task. Interrelations between the extracted entities and scientific domains, lengths of acknowledgement texts, number of authors and affiliations, number of citations, and gender of the first author, as well as collaboration patterns between Indian and German funders were examined. The study brings to light that Physics, Chemistry, Materials Science, Astronomy and Astrophysics, and Engineering prominently dominate the Indo-German collaborative research. The United States, followed by England and France, are the most active collaborators in Indian and German research. Additionally, relations between entity, entity type, and scientific domain, were discovered. The study highlights a deeper understanding of the composition of the Indo-German collaborative research landscape of the last 30 years and its significance in advancing scientific knowledge and fostering international partnerships. Furthermore, we provide an open version of the original WoS dataset. The Indo-German Literature Dataset consists of 22,844 articles from OpenAlex and is available for related studies like literature studies and Scientometrics.

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arXiv2023

VADIS -- a VAriable Detection, Interlinking and Summarization system

The VADIS system addresses the demand of providing enhanced information access in the domain of the social sciences. This is achieved by allowing users to search and use survey variables in context of their underlying research data and scholarly publications which have been interlinked with each other.

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arXiv2023

Investigating the contribution of author- and publication-specific features to scholars' h-index prediction

Evaluation of researchers' output is vital for hiring committees and funding bodies, and it is usually measured via their scientific productivity, citations, or a combined metric such as h-index. Assessing young researchers is more critical because it takes a while to get citations and increment of h-index. Hence, predicting the h-index can help to discover the researchers' scientific impact. In addition, identifying the influential factors to predict the scientific impact is helpful for researchers seeking solutions to improve it. This study investigates the effect of author, paper and venue-specific features on the future h-index. For this purpose, we used machine learning methods to predict the h-index and feature analysis techniques to advance the understanding of feature impact. Utilizing the bibliometric data in Scopus, we defined and extracted two main groups of features. The first relates to prior scientific impact, and we name it 'prior impact-based features' and includes the number of publications, received citations, and h-index. The second group is 'non-impact-based features' and contains the features related to author, co-authorship, paper, and venue characteristics. We explored their importance in predicting h-index for researchers in three different career phases. Also, we examine the temporal dimension of predicting performance for different feature categories to find out which features are more reliable for long- and short-term prediction. We referred to the gender of the authors to examine the role of this author's characteristics in the prediction task. Our findings showed that gender has a very slight effect in predicting the h-index. We found that non-impact-based features are more robust predictors for younger scholars than seniors in the short term. Also, prior impact-based features lose their power to predict more than other features in the long-term.

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arXiv2023

The Emergence of Preprints: Comparing Publishing Behaviour in the Global South and the Global North

Purpose: The recent proliferation of preprints could be a way for researchers worldwide to increase the availability and visibility of their research findings. Against the background of rising publication costs caused by the increasing prevalence of article processing fees, the search for other ways to publish research results besides traditional journal publication may increase. This could be especially true for lower-income countries. Design/methodology/approach: Therefore, we are interested in the experiences and attitudes towards posting and using preprints in the Global South as opposed to the Global North. To explore whether motivations and concerns about posting preprints differ, we adopted a mixed-methods approach, combining a quantitative survey of researchers with focus group interviews. Findings: We found that respondents from the Global South were more likely to agree to adhere to policies and to emphasise that mandates could change publishing behaviour towards open access. They were also more likely to agree posting preprints has a positive impact. Respondents from the Global South and the Global North emphasised the importance of peer-reviewed research for career advancement. Originality: The study has identified a wide range of experiences with and attitudes towards posting preprints among researchers in the Global South and the Global North. To our knowledge, this has hardly been studied before, which is also because preprints only have emerged lately in many disciplines and countries.

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arXiv2023

UnScientify: Detecting Scientific Uncertainty in Scholarly Full Text

This demo paper presents UnScientify, an interactive system designed to detect scientific uncertainty in scholarly full text. The system utilizes a weakly supervised technique that employs a fine-grained annotation scheme to identify verbally formulated uncertainty at the sentence level in scientific texts. The pipeline for the system includes a combination of pattern matching, complex sentence checking, and authorial reference checking. Our approach automates labeling and annotation tasks for scientific uncertainty identification, taking into account different types of scientific uncertainty, that can serve various applications such as information retrieval, text mining, and scholarly document processing. Additionally, UnScientify provides interpretable results, aiding in the comprehension of identified instances of scientific uncertainty in text.

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arXiv2023

Embedding Models for Supervised Automatic Extraction and Classification of Named Entities in Scientific Acknowledgements

Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different embedding models for the task of automatic extraction and classification of acknowledged entities from the acknowledgment text in scientific papers. We trained and implemented a named entity recognition (NER) task using the Flair NLP framework. The training was conducted using three default Flair NER models with four differently-sized corpora and different versions of the Flair NLP framework. The Flair Embeddings model trained on the medium corpus with the latest FLAIR version showed the best accuracy of 0.79. Expanding the size of a training corpus from very small to medium size massively increased the accuracy of all training algorithms, but further expansion of the training corpus did not bring further improvement. Moreover, the performance of the model slightly deteriorated. Our model is able to recognize six entity types: funding agency, grant number, individuals, university, corporation, and miscellaneous. The model works more precisely for some entity types than for others; thus, individuals and grant numbers showed a very good F1-Score over 0.9. Most of the previous works on acknowledgment analysis were limited by the manual evaluation of data and therefore by the amount of processed data. This model can be applied for the comprehensive analysis of acknowledgment texts and may potentially make a great contribution to the field of automated acknowledgment analysis.

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arXiv2023

Which Factors are associated with Open Access Publishing? A Springer Nature Case Study

Open Access (OA) facilitates access to articles. But, authors or funders often must pay the publishing costs preventing authors who do not receive financial support from participating in OA publishing and citation advantage for OA articles. OA may exacerbate existing inequalities in the publication system rather than overcome them. To investigate this, we studied 522,411 articles published by Springer Nature. Employing correlation and regression analyses, we describe the relationship between authors affiliated with countries from different income levels, their choice of publishing model, and the citation impact of their papers. A machine learning classification method helped us to explore the importance of different features in predicting the publishing model. The results show that authors eligible for APC waivers publish more in gold-OA journals than others. In contrast, authors eligible for an APC discount have the lowest ratio of OA publications, leading to the assumption that this discount insufficiently motivates authors to publish in gold-OA journals. We found a strong correlation between the journal rank and the publishing model in gold-OA journals, whereas the OA option is mostly avoided in hybrid journals. Also, results show that the countries' income level, seniority, and experience with OA publications are the most predictive factors for OA publishing in hybrid journals.

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arXiv2023

Retrievability in an Integrated Retrieval System: An Extended Study

Retrievability measures the influence a retrieval system has on the access to information in a given collection of items. This measure can help in making an evaluation of the search system based on which insights can be drawn. In this paper, we investigate the retrievability in an integrated search system consisting of items from various categories, particularly focussing on datasets, publications \ijdl{and variables} in a real-life Digital Library (DL). The traditional metrics, that is, the Lorenz curve and Gini coefficient, are employed to visualize the diversity in retrievability scores of the \ijdl{three} retrievable document types (specifically datasets, publications, and variables). Our results show a significant popularity bias with certain items being retrieved more often than others. Particularly, it has been shown that certain datasets are more likely to be retrieved than other datasets in the same category. In contrast, the retrievability scores of items from the variable or publication category are more evenly distributed. We have observed that the distribution of document retrievability is more diverse for datasets as compared to publications and variables.

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arXiv2022

A Comprehensive Analysis of Acknowledgement Texts in Web of Science: a case study on four scientific domains

Analysis of acknowledgments is particularly interesting as acknowledgments may give information not only about funding, but they are also able to reveal hidden contributions to authorship and the researcher's collaboration patterns, context in which research was conducted, and specific aspects of the academic work. The focus of the present research is the analysis of a large sample of acknowledgement texts indexed in the Web of Science (WoS) Core Collection. Record types 'article' and 'review' from four different scientific domains, namely social sciences, economics, oceanography and computer science, published from 2014 to 2019 in a scientific journal in English were considered. Six types of acknowledged entities, i.e., funding agency, grant number, individuals, university, corporation and miscellaneous, were extracted from the acknowledgement texts using a Named Entity Recognition (NER) tagger and subsequently examined. A general analysis of the acknowledgement texts showed that indexing of funding information in WoS is incomplete. The analysis of the automatically extracted entities revealed differences and distinct patterns in the distribution of acknowledged entities of different types between different scientific domains. A strong association was found between acknowledged entity and scientific domain and acknowledged entity and entity type. Only negligible correlation was found between the number of citations and the number of acknowledged entities. Generally, the number of words in the acknowledgement texts positively correlates with the number of acknowledged funding organizations, universities, individuals and miscellaneous entities. At the same time, acknowledgement texts with the larger number of sentences have more acknowledged individuals and miscellaneous categories.

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arXiv2022

Overview of the SV-Ident 2022 Shared Task on Survey Variable Identification in Social Science Publications

In this paper, we provide an overview of the SV-Ident shared task as part of the 3rd Workshop on Scholarly Document Processing (SDP) at COLING 2022. In the shared task, participants were provided with a sentence and a vocabulary of variables, and asked to identify which variables, if any, are mentioned in individual sentences from scholarly documents in full text. Two teams made a total of 9 submissions to the shared task leaderboard. While none of the teams improve on the baseline systems, we still draw insights from their submissions. Furthermore, we provide a detailed evaluation. Data and baselines for our shared task are freely available at https://github.com/vadis-project/sv-ident

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arXiv2022

Towards Automated Survey Variable Search and Summarization in Social Science Publications

Nowadays there is a growing trend in many scientific disciplines to support researchers by providing enhanced information access through linking of publications and underlying datasets, so as to support research with infrastructure to enhance reproducibility and reusability of research results. In this research note, we present an overview of an ongoing research project, named VADIS (VAriable Detection, Interlinking and Summarization), that aims at developing technology and infrastructure for enhanced information access in the Social Sciences via search and summarization of publications on the basis of automatic identification and indexing of survey variables in text. We provide an overview of the overarching vision underlying our project, its main components, and related challenges, as well as a thorough discussion of how these are meant to address the limitations of current information access systems for publications in the Social Sciences. We show how this goal can be concretely implemented in an end-user system by presenting a search prototype, which is based on user requirements collected from qualitative interviews with empirical Social Science researchers.

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arXiv2022

Evaluation of Embedding Models for Automatic Extraction and Classification of Acknowledged Entities in Scientific Documents

Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different embedding models for the task of automatic extraction and classification of acknowledged entities from the acknowledgment text in scientific papers. We trained and implemented a named entity recognition (NER) task using the Flair NLP-framework. The training was conducted using three default Flair NER models with two differently-sized corpora. The Flair Embeddings model trained on the larger training corpus showed the best accuracy of 0.77. Our model is able to recognize six entity types: funding agency, grant number, individuals, university, corporation and miscellaneous. The model works more precise for some entity types than the others, thus, individuals and grant numbers showed very good F1-Score over 0.9. Most of the previous works on acknowledgement analysis were limited by the manual evaluation of data and therefore by the amount of processed data. This model can be applied for the comprehensive analysis of the acknowledgement texts and may potentially make a great contribution to the field of automated acknowledgement analysis.

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arXiv2022

Studying Retrievability of Publications and Datasets in an Integrated Retrieval System

In this paper, we investigate the retrievability of datasets and publications in a real-life Digital Library (DL). The measure of retrievability was originally developed to quantify the influence that a retrieval system has on the access to information. Retrievability can also enable DL engineers to evaluate their search engine to determine the ease with which the content in the collection can be accessed. Following this methodology, in our study, we propose a system-oriented approach for studying dataset and publication retrieval. A speciality of this paper is the focus on measuring the accessibility biases of various types of DL items and including a metric of usefulness. Among other metrics, we use Lorenz curves and Gini coefficients to visualize the differences of the two retrievable document types (specifically datasets and publications). Empirical results reported in the paper show a distinguishable diversity in the retrievability scores among the documents of different types.

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arXiv2022

The many facets of academic mobility and its impact on scholars' career

International mobility in academia can enhance the human and social capital of researchers and consequently their scientific outcome. However, there is still a very limited understanding of the different mobility patterns among scholars with various socio-demographic characteristics. The aim of this study is twofold. First, we investigate to what extent individual factors associate with the mobility of researchers. Second, we explore the relationship between mobility and scientific activity and impact. For this purpose, we used a bibliometric approach to track the mobility of authors. To compare the scientific outcomes of researchers, we considered the number of publications and received citations as indicators, as well as the number of unique co-authors in all their publications. We also analysed the co-authorship network of researchers and compared centrality measures of mobile and non-mobile researchers. Results show that researchers from North America and Sub-Saharan Africa, particularly female ones, have the lowest, respectively, highest tendency towards international mobility. Having international co-authors increases the probability of international movement. Our findings uncover gender inequality in international mobility across scientific fields and countries. Across genders, researchers in the Physical sciences have the most and in the Social sciences the least rate of mobility. We observed more mobility for Social scientists at the advanced career stage, while researchers in other fields prefer to move at earlier career stages. Also, we found a positive correlation between mobility and scientific outcomes, but no apparent difference between females and males. Comparing the centrality of mobile and non-mobile researchers in the co-authorship networks reveals a higher social capital advantage for mobile researchers.

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arXiv2021

BiblioDAP: The 1st Workshop on Bibliographic Data Analysis and Processing

Automatic processing of bibliographic data becomes very important in digital libraries, data science and machine learning due to its importance in keeping pace with the significant increase of published papers every year from one side and to the inherent challenges from the other side. This processing has several aspects including but not limited to I) Automatic extraction of references from PDF documents, II) Building an accurate citation graph, III) Author name disambiguation, etc. Bibliographic data is heterogeneous by nature and occurs in both structured (e.g. citation graph) and unstructured (e.g. publications) formats. Therefore, it requires data science and machine learning techniques to be processed and analysed. Here we introduce BiblioDAP'21: The 1st Workshop on Bibliographic Data Analysis and Processing.

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arXiv2021

ConSTR: A Contextual Search Term Recommender

In this demo paper, we present ConSTR, a novel Contextual Search Term Recommender that utilises the user's interaction context for search term recommendation and literature retrieval. ConSTR integrates a two-layered recommendation interface: the first layer suggests terms with respect to a user's current search term, and the second layer suggests terms based on the users' previous search activities (interaction context). For the demonstration, ConSTR is built on the arXiv, an academic repository consisting of 1.8 million documents.

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