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Qiangqiang Dai

Publications and source records attributed to Qiangqiang Dai.

16 recordsLinked to original sources
arXiv2026

WCCS: Efficient Wedge Conductance Community Search over Large Temporal Bipartite Graphs (Full Paper)

Bipartite graphs are ubiquitous for modeling complex interactions between two distinct entity types across numerous practical applications such as e-commerce, academic networks, and social systems. Despite significant progress in community search over bipartite graphs, most prior work is limited to static settings and ignores the rich temporal dynamics present in real-world networks. Moreover, existing methods typically adopt edge-centric measures and strict consecutivity constraints, failing to capture higher-order interactions and frequent yet non-consecutive activities. More importantly, they often neglect the crucial community-quality requirements of both internal cohesiveness and external sparsity, failing to identify critical nodes or including many irrelevant nodes. To address these dilemmas, we propose the novel problem of \emph{Wedge Conductance Community Search (WCCS)}, which aims to identify a query-dependent community that is not only structurally and temporally cohesive but also well-separated from the rest of the network over non-consecutive timestamps. We formalize WCCS by generalizing the classical $(α,β)$-core to a higher-order $(α,β,τ)$-wedge core, and by proposing a novel temporal wedge conductance metric that explicitly balances internal density and external sparsity. To solve WCCS efficiently, we first develop an online priority-driven filter-and-expand framework with several effective pruning techniques and a powerful geometric slope optimization for rapid temporal wedge conductance calculation. Subsequently, to further improve scalability, we propose an offline compressed index to accelerate search. Finally, comprehensive experiments on seven real-world datasets demonstrate the effectiveness, efficiency, and scalability of our solutions compared to eight competitors.

cs.SI↗
arXiv2026

OpenRTAG: A Comprehensive Benchmark for Robust Text-Attributed Graph Learning under Data Quality Degradation

Text-attributed graphs (TAGs) are an important graph data form that combine relational structure with rich node text. However, real-world TAGs are often imperfect, with quality issues arising from text, structure, and labels, and typically manifesting as sparsity, noise, and imbalance. These dimensions define nine representative degradation scenarios that can substantially affect TAG learning. Although prior studies have explored specific mitigation strategies, existing evidence remains fragmented across degradation types, datasets, tasks, and model families, leaving TAG robustness insufficiently understood. To address this gap, we present OpenRTAG, a robustness benchmark for text-attributed graph learning. OpenRTAG organizes TAG quality issues into a unified 3 * 3 taxonomy and supports standardized evaluation across nine TAG datasets and three downstream tasks. It systematically evaluates scenario validity and model sensitivity, compares traditional GNNs, LLM-GNNs, and a representative GFM, investigates the effectiveness, efficiency, and robustness of scenario-matched baselines, and further examines model behavior under composite degradation scenarios. OpenRTAG provides a standardized testbed for understanding robustness in TAG learning under realistic low-quality settings.

cs.AI↗
arXiv2026

Revisiting Maximum $k$-Biplex Search Through $k$-Bounded-Degree Deletion

Biplex, as a relaxation of the biclique model, has emerged as an important cohesive subgraph model for bipartite graph analysis. The maximum $k$-biplex search problem aims to identify the $k$-biplex with maximum number of edges and has been widely applied in various real-world applications, including community detection, online recommendation, and fraud detection. However, the problem is NP-hard, and existing exact algorithms remain inefficient on large-scale bipartite graphs with large values of $k$ (e.g., $k\geq 3$). In this paper, we revisit the maximum $k$-biplex search problem from a complementary perspective. We reveal a novel structural duality: finding a maximum $k$-biplex in a bipartite graph is equivalent to finding a minimal $k$-bounded-degree deletion in its complement graph. Based on this observation, we propose a novel deletion-based algorithm for the maximum $k$-biplex search problem. We theoretically prove that the proposed algorithm achieves a worst-case time complexity of $O^*(γ_k^n)$, where $γ_k<2$. Specifically, $γ_1=1.725$, $γ_2=1.856$, and $γ_3=1.928$. To further enhance practical efficiency, we develop several effective upper-bounding techniques and a heuristic strategy for obtaining high-quality initial solutions, which substantially reduce the search space. Extensive experiments on eight real-world bipartite graphs demonstrate the efficiency of our approach, which achieves up to four orders of magnitude speedups over state-of-the-art algorithms.

cs.DS↗
arXiv2026

MAGE-RAG: Multigranular Adaptive Graph Evidence for Agentic Multimodal RAG in Long-Document QA

Long-document multimodal question answering requires a system to locate sparse evidence in long PDFs and integrate clues from text, tables, images, charts, and complex layouts. Existing RAG methods mostly rely on fixed Top-k retrieval over text chunks or pages. Text retrieval can compress the context but often loses visual and layout information; page-level visual retrieval preserves the original page, yet it also sends large irrelevant regions to the reader, leading to a static trade-off among evidence coverage, noise, and inference cost. This paper proposes MAGE-RAG, a multigranular adaptive graph evidence framework for long-document multimodal QA. MAGE-RAG uses page retrieval as the entry point for query-time evidence construction. Offline, it builds an evidence graph with page nodes and element nodes, encoding containment, reading order, layout adjacency, section hierarchy, and semantic-neighbor relations. At query time, an online evidence controller iteratively activates, opens, searches, and prunes evidence under explicit budgets. The resulting evidence subgraph is then rendered into structured multimodal reader input, allowing the LVLM to consume compact and relevant evidence within a limited context. On LongDocURL and MMLongBench-Doc, we establish a unified comparison and analysis protocol covering Direct MLLM, Text RAG, Page-level Visual RAG, and Graph/Agentic RAG. Experiments show that MAGE-RAG achieves 52.75 overall accuracy on LongDocURL, and 53.26 accuracy with 51.19 F1 on MMLongBench-Doc. Fine-grained breakdowns, budget-performance curves, ablations, and trace-based analysis further show that query-time evidence subgraph construction can balance dispersed evidence coverage with context-noise control. Our code is available at https://github.com/laonuo2004/MAGE-RAG.git.

cs.IR↗
arXiv2026

DOGMA: Weaving Structural Information into Data-centric Single-cell Transcriptomics Analysis

Recently, data-centric AI methodology has been a dominant paradigm in single-cell transcriptomics analysis, which treats data representation rather than model complexity as the fundamental bottleneck. In the review of current studies, earlier sequence methods treat cells as independent entities and adapt prevalent ML models to analyze their directly inherited sequence data. Despite their simplicity and intuition, these methods overlook the latent intercellular relationships driven by the functional mechanisms of biological systems and the inherent quality issues of the raw sequencing data. Therefore, a series of structured methods has emerged. Although they employ various heuristic rules to capture intricate intercellular relationships and enhance the raw sequencing data, these methods often neglect biological prior knowledge. This omission incurs substantial overhead and yields suboptimal graph representations, hindering the utility of ML models. To address these issues, we propose DOGMA, a data-centric framework designed for the structural reshaping and semantic enhancement of raw data through multi-level biological prior knowledge. Transcending reliance on purely data-driven heuristics, DOGMA provides a prior-guided graph construction pipeline that integrates statistical alignment with Cell Ontology and phylogenetic structure for biologically grounded cell-graph construction and robust cross-species alignment. Furthermore, Gene Ontology is utilized to bridge the feature-level semantic gap by incorporating functional priors. In complex multi-species and multi-organ benchmarks, DOGMA exhibits strong robustness in strict zero-shot cell-type evaluation and sample efficiency while using substantially lower GPU memory and inference time in downstream evaluation.

cs.LG↗
arXiv2026

RNSG: A Range-Aware Graph Index for Efficient Range-Filtered Approximate Nearest Neighbor Search

Range-filtered approximate nearest neighbor (RFANN) search is a fundamental operation in modern data systems. Given a set of objects, each with a vector and a numerical attribute, an RFANN query retrieves the nearest neighbors to a query vector among those objects whose numerical attributes fall within the range specified by the query. Existing state-of-the-art methods for RFANN search often require constructing multiple range-specific graph indexes to achieve high query performance, which incurs significant indexing overhead. To address this, we first establish a novel graph indexing theory, the range-aware relative neighborhood graph (RRNG), which jointly considers spatial and attribute proximity. We prove that the RRNG satisfies two crucial properties: (1) monotonic search-ability, which ensures correct nearest neighbor retrieval via beam search; and (2) structural heredity, which guarantees that any range-induced subgraph remains a valid RRNG, thus enabling efficient search with a single graph index. Based on this theoretical foundation, we propose a new graph index called RNSG as a practical solution that efficiently approximates RRNG. We develop fast algorithms for both constructing the RNSG index and processing RFANN queries with it. Extensive experiments on five real-world datasets show that RNSG achieves significantly higher query performance with a more compact index and lower construction cost than existing state-of-the-art methods.

cs.DB↗
arXiv2026

OpenDDI: A Comprehensive Benchmark for DDI Prediction

Drug-Drug Interactions (DDIs) significantly influence therapeutic efficacy and patient safety. As experimental discovery is resource-intensive and time-consuming, efficient computational methodologies have become essential. The predominant paradigm formulates DDI prediction as a drug graph-based link prediction task. However, further progress is hindered by two fundamental challenges: (1) lack of high-quality data: most studies rely on small-scale DDI datasets and single-modal drug representations; (2) lack of standardized evaluation: inconsistent scenarios, varied metrics, and diverse baselines. To address the above issues, we propose OpenDDI, a comprehensive benchmark for DDI prediction. Specifically, (1) from the data perspective, OpenDDI unifies 6 widely used DDI datasets and 2 existing forms of drug representation, while additionally contributing 3 new large-scale LLM-augmented datasets and a new multimodal drug representation covering 5 modalities. (2) From the evaluation perspective, OpenDDI unifies 20 SOTA model baselines across 3 downstream tasks, with standardized protocols for data quality, effectiveness, generalization, robustness, and efficiency. Based on OpenDDI, we conduct a comprehensive evaluation and derive 10 valuable insights for DDI prediction while exposing current limitations to provide critical guidance for this rapidly evolving field. Our code is available at https://github.com/xiaoriwuguang/OpenDDI

cs.LG↗
arXiv2026

OptiMAG: Structure-Semantic Alignment via Unbalanced Optimal Transport

Multimodal Attributed Graphs (MAGs) have been widely adopted for modeling complex systems by integrating multi-modal information, such as text and images, on nodes. However, we identify a discrepancy between the implicit semantic structure induced by different modality embeddings and the explicit graph structure. For instance, neighbors in the explicit graph structure may be close in one modality but distant in another. Since existing methods typically perform message passing over the fixed explicit graph structure, they inadvertently aggregate dissimilar features, introducing modality-specific noise and impeding effective node representation learning. To address this, we propose OptiMAG, an Unbalanced Optimal Transport-based regularization framework. OptiMAG employs the Fused Gromov-Wasserstein distance to explicitly guide cross-modal structural consistency within local neighborhoods, effectively mitigating structural-semantic conflicts. Moreover, a KL divergence penalty enables adaptive handling of cross-modal inconsistencies. This framework can be seamlessly integrated into existing multimodal graph models, acting as an effective drop-in regularizer. Experiments demonstrate that OptiMAG consistently outperforms baselines across multiple tasks, ranging from graph-centric tasks (e.g., node classification, link prediction) to multimodal-centric generation tasks (e.g., graph2text, graph2image). The source code will be available upon acceptance.

cs.LG↗
arXiv2026

MM-OpenFGL: A Comprehensive Benchmark for Multimodal Federated Graph Learning

Multimodal-attributed graphs (MMAGs) provide a unified framework for modeling complex relational data by integrating heterogeneous modalities with graph structures. While centralized learning has shown promising performance, MMAGs in real-world applications are often distributed across isolated platforms and cannot be shared due to privacy concerns or commercial constraints. Federated graph learning (FGL) offers a natural solution for collaborative training under such settings; however, existing studies largely focus on single-modality graphs and do not adequately address the challenges unique to multimodal federated graph learning (MMFGL). To bridge this gap, we present MM-OpenFGL, the first comprehensive benchmark that systematically formalizes the MMFGL paradigm and enables rigorous evaluation. MM-OpenFGL comprises 19 multimodal datasets spanning 7 application domains, 8 simulation strategies capturing modality and topology variations, 6 downstream tasks, and 57 state-of-the-art methods implemented through a modular API. Extensive experiments investigate MMFGL from the perspectives of necessity, effectiveness, robustness, and efficiency, offering valuable insights for future research on MMFGL.

cs.LG↗
arXiv2026

BoostFGL: Boosting Fairness in Federated Graph Learning

Federated graph learning (FGL) enables collaborative training of graph neural networks (GNNs) across decentralized subgraphs without exposing raw data. While existing FGL methods often achieve high overall accuracy, we show that this average performance can conceal severe degradation on disadvantaged node groups. From a fairness perspective, these disparities arise systematically from three coupled sources: label skew toward majority patterns, topology confounding in message propagation, and aggregation dilution of updates from hard clients. To address this, we propose \textbf{BoostFGL}, a boosting-style framework for fairness-aware FGL. BoostFGL introduces three coordinated mechanisms: \ding{182} \emph{Client-side node boosting}, which reshapes local training signals to emphasize systematically under-served nodes; \ding{183} \emph{Client-side topology boosting}, which reallocates propagation emphasis toward reliable yet underused structures and attenuates misleading neighborhoods; and \ding{184} \emph{Server-side model boosting}, which performs difficulty- and reliability-aware aggregation to preserve informative updates from hard clients while stabilizing the global model. Extensive experiments on 9 datasets show that BoostFGL delivers substantial fairness gains, improving Overall-F1 by 8.43\%, while preserving competitive overall performance against strong FGL baselines.

cs.LG↗
arXiv2025

A Computationally Efficient Framework for Overlapping Community Detection in Large Bipartite Graphs

Community detection, which uncovers closely connected vertex groups in networks, is vital for applications in social networks, recommendation systems, and beyond. Real-world networks often have bipartite structures (vertices in two disjoint sets with inter-set connections), creating unique challenges on specialized community detection methods. Biclique percolation community (BCPC) is widely used to detect cohesive structures in bipartite graphs. A biclique is a complete bipartite subgraph, and a BCPC forms when maximal bicliques connect via adjacency (sharing an (alpha, beta)-biclique). Yet, existing methods for BCPC detection suffer from high time complexity due to the potentially massive maximal biclique adjacency graph (MBAG). To tackle this, we propose a novel partial-BCPC based solution, whose key idea is to use partial-BCPC to reduce the size of the MBAG. A partial-BCPC is a subset of BCPC. Maximal bicliques belonging to the same partial-BCPC must also belong to the same BCPC. Therefore, these maximal bicliques can be grouped as a single vertex in the MBAG, significantly reducing the size of the MBAG. Furthermore, we move beyond the limitations of MBAG and propose a novel BCPC detection approach based on (alpha, beta)-biclique enumeration. This approach detects BCPC by enumerating all (alpha, beta)-bicliques and connecting maximal bicliques sharing the same (alpha, beta)-biclique, which is the condition for maximal bicliques to be adjacent. It also leverages partial-BCPC to significantly prune the enumeration space of (alpha, beta)-biclique. Experiments show that our methods outperform existing methods by nearly three orders of magnitude.

cs.SI↗
arXiv2025

On the Efficient Discovery of Maximum $k$-Defective Biclique

The problem of identifying the maximum edge biclique in bipartite graphs has attracted considerable attention in bipartite graph analysis, with numerous real-world applications such as fraud detection, community detection, and online recommendation systems. However, real-world graphs may contain noise or incomplete information, leading to overly restrictive conditions when employing the biclique model. To mitigate this, we focus on a new relaxed subgraph model, called the $k$-defective biclique, which allows for up to $k$ missing edges compared to the biclique model. We investigate the problem of finding the maximum edge $k$-defective biclique in a bipartite graph, and prove that the problem is NP-hard. To tackle this computation challenge, we propose a novel algorithm based on a new branch-and-bound framework, which achieves a worst-case time complexity of $O(mα_k^n)$, where $α_k < 2$. We further enhance this framework by incorporating a novel pivoting technique, reducing the worst-case time complexity to $O(mβ_k^n)$, where $β_k < α_k$. To improve the efficiency, we develop a series of optimization techniques, including graph reduction methods, novel upper bounds, and a heuristic approach. Extensive experiments on 10 large real-world datasets validate the efficiency and effectiveness of the proposed approaches. The results indicate that our algorithms consistently outperform state-of-the-art algorithms, offering up to $1000\times$ speedups across various parameter settings.

cs.DS↗
arXiv2024

Efficient Antagonistic k-plex Enumeration in Signed Graphs

A signed graph is a graph where each edge receives a sign, positive or negative. The signed graph model has been used in many real applications, such as protein complex discovery and social network analysis. Finding cohesive subgraphs in signed graphs is a fundamental problem. A k-plex is a common model for cohesive subgraphs in which every vertex is adjacent to all but at most k vertices within the subgraph. In this paper, we propose the model of size-constrained antagonistic k-plex in a signed graph. The proposed model guarantees that the resulting subgraph is a k-plex and can be divided into two sub-k-plexes, both of which have positive inner edges and negative outer edges. This paper aims to identify all maximal antagonistic k-plexes in a signed graph. Through rigorous analysis, we show that the problem is NP-Hardness. We propose a novel framework for maximal antagonistic k-plexes utilizing set enumeration. Efficiency is improved through pivot pruning and early termination based on the color bound. Preprocessing techniques based on degree and dichromatic graphs effectively narrow the search space before enumeration. Extensive experiments on real-world datasets demonstrate our algorithm's efficiency, effectiveness, and scalability.

cs.DB↗
arXiv2023

Scalable Algorithms for Laplacian Pseudo-inverse Computation

The pseudo-inverse of a graph Laplacian matrix, denoted as $L^\dagger$, finds extensive application in various graph analysis tasks. Notable examples include the calculation of electrical closeness centrality, determination of Kemeny's constant, and evaluation of resistance distance. However, existing algorithms for computing $L^\dagger$ are often computationally expensive when dealing with large graphs. To overcome this challenge, we propose novel solutions for approximating $L^\dagger$ by establishing a connection with the inverse of a Laplacian submatrix $L_v$. This submatrix is obtained by removing the $v$-th row and column from the original Laplacian matrix $L$. The key advantage of this connection is that $L_v^{-1}$ exhibits various interesting combinatorial interpretations. We present two innovative interpretations of $L_v^{-1}$ based on spanning trees and loop-erased random walks, which allow us to develop efficient sampling algorithms. Building upon these new theoretical insights, we propose two novel algorithms for efficiently approximating both electrical closeness centrality and Kemeny's constant. We extensively evaluate the performance of our algorithms on five real-life datasets. The results demonstrate that our novel approaches significantly outperform the state-of-the-art methods by several orders of magnitude in terms of both running time and estimation errors for these two graph analysis tasks. To further illustrate the effectiveness of electrical closeness centrality and Kemeny's constant, we present two case studies that showcase the practical applications of these metrics.

cs.DS↗
arXiv2022

Scaling Up Maximal k-plex Enumeration

Finding all maximal $k$-plexes on networks is a fundamental research problem in graph analysis due to many important applications, such as community detection, biological graph analysis, and so on. A $k$-plex is a subgraph in which every vertex is adjacent to all but at most $k$ vertices within the subgraph. In this paper, we study the problem of enumerating all large maximal $k$-plexes of a graph and develop several new and efficient techniques to solve the problem. Specifically, we first propose several novel upper-bounding techniques to prune unnecessary computations during the enumeration procedure. We show that the proposed upper bounds can be computed in linear time. Then, we develop a new branch-and-bound algorithm with a carefully-designed pivot re-selection strategy to enumerate all $k$-plexes, which outputs all $k$-plexes in $O(n^2γ_k^n)$ time theoretically, where $n$ is the number of vertices of the graph and $γ_k$ is strictly smaller than 2. In addition, a parallel version of the proposed algorithm is further developed to scale up to process large real-world graphs. Finally, extensive experimental results show that the proposed sequential algorithm can achieve up to $2\times$ to $100\times$ speedup over the state-of-the-art sequential algorithms on most benchmark graphs. The results also demonstrate the high scalability of the proposed parallel algorithm. For example, on a large real-world graph with more than 200 million edges, our parallel algorithm can finish the computation within two minutes, while the state-of-the-art parallel algorithm cannot terminate within 24 hours.

cs.DS↗
arXiv2021

Scaling Up Distance-generalized Core Decomposition

Core decomposition is a fundamental operator in network analysis. In this paper, we study the problem of computing distance-generalized core decomposition on a network. A distance-generalized core, also termed $(k, h)$-core, is a maximal subgraph in which every vertex has at least $k$ other vertices at distance no larger than $h$. The state-of-the-art algorithm for solving this problem is based on a peeling technique which iteratively removes the vertex (denoted by $v$) from the graph that has the smallest $h$-degree. The $h$-degree of a vertex $v$ denotes the number of other vertices that are reachable from $v$ within $h$ hops. Such a peeling algorithm, however, needs to frequently recompute the $h$-degrees of $v$'s neighbors after deleting $v$, which is typically very costly for a large $h$. To overcome this limitation, we propose an efficient peeling algorithm based on a novel $h$-degree updating technique. Instead of recomputing the $h$-degrees, our algorithm can dynamically maintain the $h$-degrees for all vertices via exploring a very small subgraph, after peeling a vertex. We show that such an $h$-degree updating procedure can be efficiently implemented by an elegant bitmap technique. In addition, we also propose a sampling-based algorithm and a parallelization technique to further improve the efficiency. Finally, we conduct extensive experiments on 12 real-world graphs to evaluate our algorithms. The results show that, when $h\ge 3$, our exact and sampling-based algorithms can achieve up to $10\times$ and $100\times$ speedup over the state-of-the-art algorithm, respectively.

cs.DS↗