arXiv subjects

R. J. Dwayne Miller

Publications and source records attributed to R. J. Dwayne Miller.

At least 19 recordsLinked to original sources

arXiv2026

Environmental Control Extends Beyond Quantum Dephasing in Exciton Energy Transfer

Excitation-energy transfer underpins the conversion of light into usable energy in photosynthetic organisms and serves as a paradigm for evolutionary optimized transport in open quantum systems. Although this process is often described as incoherent thermally assisted hopping, such descriptions become inadequate when electronic coupling, vibronic interactions and environmental fluctuations occur on comparable energy scales. Determining how the environment controls transport therefore remains a fundamental challenge. Here, we use temperature-dependent 2DES to investigate energy transfer in the photosynthetic antenna protein allophycocyanin over the range 10 - 296 K. The dominant $β\rightarrow α$ transfer step exhibits a pronounced non-monotonic temperature dependence: the transfer time decreases from 400 fs at 10 K to 200 fs near 30- 40 K before increasing again to 400 fs at 296 K. In contrast, the homogeneous optical dephasing time decreases monotonically across the same temperature range. To interpret these observations, we model APC as a vibronically coupled excitonic dimer interacting with a structured environment and solve the dynamics using hierarchical equations of motion. Conventional fixed-bath models, including Drude-Lorentz and explicit intermolecular-mode spectral densities, fail to reproduce the observed turnover. Quantitative agreement is obtained only when the low-frequency sector of the environmental spectral density is allowed to anharmonically evolve strongly with temperature, while the high-frequency bath remains essentially unchanged. More broadly, these findings demonstrate that transport efficiency is controlled not simply by the magnitude of environmental fluctuations, but by the distribution of environmental spectral weight across frequency space, providing new experimental constraints on theories of molecular transport in complex quantum environments.

physics.chem-ph↗

arXiv2026

Conical Intersections Enable Ultrafast Molecular Spin Control in a Chromium Complex

Molecular spintronics seeks to control spin states in single molecules for ultrafast switching and efficient information processing. Transition metal complexes are promising candidates for such applications due to their modular ligand fields, diverse spin configurations, and potential for spin-vibronic coupling that facilitates rapid spin dynamics. Chromium(III) complexes, in particular, offer long-lived emissive doublet states and chemical robustness, making them attractive for room-temperature spin control. Here we investigate the spin-state dynamics of tris(2,4-pentanedionato)chromium(III), [Cr(acac)3], a photochemically stable d3 complex with minimal vibrational congestion. Using ultrafast transient grating and two dimensional electronic spectroscopy with ~10 fs resolution, we directly probe vibrational and electronic dynamics associated with the 4T2 -> 2E intersystem crossing (ISC). These measurements reveal coherent vibrational modes implicated in mediating nonadiabatic spin transitions. Complementary theoretical modelling shows that vibronic coupling and spin orbit interactions promote the formation of multiple conical intersections, providing ultrafast channels for spin-flip dynamics. Metal-ligand bending and stretching modes serve as tuning and coupling coordinates, enabling ISC despite weak spin-orbit coupling in 3d transition metal. Our study provides mechanistic insight into spin-vibronic dynamics in Cr(III) complexes and establishes a design framework for achieving ultrafast molecular spin switching, advancing the development of optically addressable spin centres for future spintronic and quantum technologies.

physics.chem-ph↗

arXiv2026

Controlling Nonadiabatic Transitions Through Engineered Ultrafast Laser Fields at Conical Intersections

In this paper, we investigate coherent control of nonadiabatic dynamics at a conical intersection (CI) using engineered ultrafast laser pulses. Within a model vibronic system, we tailor pulse chirp and temporal profile and compute the resulting wave-packet population and coherence dynamics using projections along the reaction coordinate. This approach allows us to resolve the detailed evolution of wave-packets as they traverse the degeneracy region with strong nonadiabatic coupling. By systematically varying pulse parameters, we demonstrate that both chirp and pulse duration modulate vibrational coherence and alter branching between competing pathways, leading to controlled changes in quantum yield. Our results elucidate the dynamical mechanisms underlying pulse-shaped control near conical intersections and establish a general framework for manipulating ultrafast nonadiabatic processes.

quant-ph↗

arXiv2025

Femtosecond photo-induced displacive phase transition in Sb$_{2}$Te (group 2) phase-change material

Two classes of Phase Change Materials (PCMs) have emerged as the best candidates for applications requiring the fast reading and writing of data: GeTe-Sb$_{2}$Te$_{3}$ pseudobinary alloys (group 1) and doped Sb-Te compounds near the eutectic composition Sb$_{70}$Te$_{30}$ (group 2). Both material classes undergo reversible switching between a low-resistance opaque crystalline phase and a high-resistance but less absorbing amorphous phase through heating, electrical, or optical pulses, achieving (sub-)nanosecond switching speeds. While group 1 compounds are employed in current generation devices and relatively well studied, model systems in group 2 compounds have been found to crystallize more rapidly and thus offer the perspective of improved devices. Despite their superior crystallization speed (SET process), to this point there have been no ultrafast experimental studies on crystallized PCMs of group 2 for the RESET process. Here we perform ultrafast electron diffraction and femtosecond resolved sum frequency non-linear spectroscopy on Peierls distorted Sb$_{2}$Te crystallized thin films (PCM of group 2) following femtosecond optical pulse irradiation. We observe a pump-induced structural change on two distinct timescales: responses with characteristic timescales of $\approx$ 300 fs and 2~ps. We quantified the experimental result by a coherent displacement and the Debye-Waller effect. In particular, the $\approx$ 300 fs UED signal results from the ultrafast release of the Peierls distortion through non-thermal coherent Sb displacement, while the 2~ps response reflects electron-lattice equilibrium. These results reveal the ultrafast non-thermal structural dynamics of Sb$_{2}$Te and suggest energy-efficient switching of group 2 PCMs should be possible on femtosecond time scales.

cond-mat.mtrl-sci↗

arXiv2025

Excitonic Energy Transfer in Red Algal Photosystem I Reveals an Evolutionary Bridge between Cyanobacteria and Plants

Photosystem I converts light into chemical energy with near-unity quantum efficiency,yet its energy-transfer and charge-separation mechanisms remain debated. Evolution has diversified PSI architectures. The unicellular red algae Cyanidioschyzon merolae represents a key evolutionary intermediate,featuring a cyanobacterial-like monomeric core surrounded by three to five LHCR subunits. This hybrid organization provides a unique system to bridge mechanistic models across lineages. We applied two-dimensional electronic spectroscopy at ultralow temperatures to disentangle overlapping excitation pathways in C. merolae PSI. Cryogenic measurements suppressed thermal broadening, resolving five dynamical components: sub-picosecond equilibration acrossthe core-LHCR interface, subsequent population transfer into progressively lowerenergy manifolds, and slower feeding into red pools distributed across both core and antenna. On the longest timescales, a persistent ground-state bleach signifies excitons stabilised in terminal sinks. Notably, comparison of 8 K and 80 K spectra reveals that excitations are heterogeneously partitioned among multiple sinks at low disorder, whereas modest thermal activation promotes selective convergence into core-associated red chlorophylls. To interpret these dynamics, we employed atomistic excitonic Hamiltonians with time-nonlocal master equations, providing a quantitative framework for exciton migration and thermal redistribution. Together, these results demonstrate that C. merolae PSI broadens the kinetic funnel by distributing sinks across core and antenna, an evolutionary adaptation that extends spectral coverage whilst ensuring efficient trapping. These insights reconcile cyanobacterial and plant paradigms and illuminate how antenna expansion reshaped PSI function during the course of photosynthetic evolution.

physics.chem-ph↗

arXiv2024

Quantum tomography of molecules using ultrafast electron diffraction

We propose a quantum tomography (QT) approach to retrieve the temporally evolving reduced density matrix in elecotronic state basis, where the populations and coherence between ground state and excited state are reconstructed from the ultrafast electron diffraction signal. In order to showcase the capability of the proposed QT approach, we simulate the nuclear wavepacket dynamics and ultrafast electron diffraction of photoexcited pyrrole molecules using ab initio quantum chemical CASSCF method. From simulated time-resolved diffraction data, we retrieve the evolving density matrix in a crude diabatic representation basis and reveal the symmetry of the excited pyrrole wavepacket. Our QT approach opens the route to make quantum version of "molecular movie" that covers the electronic degree of freedom, and equips ultrafast electron diffraction with the power to reveal the coherence between electronic states, relaxation and dynamics of population transfer.

physics.chem-ph↗

arXiv2024

Synthesis technique and electron beam damage study of nanometer-thin single-crystalline Thymine

Samples suitable for electron diffraction studies must satisfy certain characteristics such as having a thickness in the range of 10 - 100 nm. We report, to our knowledge, the first successful synthesis technique of nanometer-thin sheets of single-crystalline thymine suitable for electron diffraction and spectroscopy studies. This development provides a well defined system to explore issues related to UV photochemistry of DNA and high intrinsic stability essential to maintaining integrity of genetic information. The crystals are grown using the evaporation technique and the nanometer-thin sheets are obtained via microtoming. The sample is characterized via x-ray diffraction (XRD) and is subsequently studied using electron diffraction via a transmission electron microscope (TEM). Thymine is found to be more radiation resistant than similar molecular moieties (e.g., carbamazepine) by a factor of 5. This raises interesting questions about the role of the fast relaxation processes of electron scattering-induced excited states, extending the concept of radiation hardening beyond photoexcited states. The high stability of thymine in particular opens the door for further studies of these ultrafast relaxation processes giving rise to the high stability of DNA to UV radiation.

physics.chem-ph↗

arXiv2023

Unraveling Quantum Coherences Mediating Primary Charge Transfer Processes in Photosystem II Reaction Center

Photosystem II (PSII) reaction center is a unique protein-chromophore complex that is capable of efficiently separating electronic charges across the membrane after photoexcitation. In the PSII reaction center, the primary energy- and charge-transfer (CT) processes occur on comparable ultrafast timescales, which makes it extremely challenging to understand the fundamental mechanism responsible for the near-unity quantum efficiency of the transfer. Here, we elucidate the role of quantum coherences in the ultrafast energy and CT in the PSII reaction center by performing two-dimensional (2D) electronic spectroscopy at the cryogenic temperature of 20 K, which captures the distinct underlying quantum coherences. Specifically, we uncover the electronic and vibrational coherences along with their lifetimes during the primary ultrafast processes of energy and CT. We also examine the functional role of the observed quantum coherences. To gather further insight, we construct a structure-based excitonic model that provided evidence for coherent energy and CT at low temperature in the 2D electronic spectra. The principles, uncovered by this combination of experimental and theoretical analyses, could provide valuable guidelines for creating artificial photosystems with exploitation of system-bath coupling and control of coherences to optimize the photon conversion efficiency to specific functions.

physics.chem-ph↗

arXiv2023

Novel applications of Generative Adversarial Networks (GANs) in the analysis of ultrafast electron diffraction (UED) images

Inferring transient molecular structural dynamics from diffraction data is an ambiguous task that often requires different approximation methods. In this paper we present an attempt to tackle this problem using machine learning. While most recent applications of machine learning for the analysis of diffraction images apply only a single neural network to an experimental dataset and train it on the task of prediction, our approach utilizes an additional generator network trained on both synthetic data and experimental data. Our network converts experimental data into idealized diffraction patterns from which information is extracted via a convolutional neural network (CNN) trained on synthetic data only. We validate this approach on ultrafast electron diffraction (UED) data of bismuth samples undergoing thermalization upon excitation via 800 nm laser pulses. The network was able to predict transient temperatures with a deviation of less than 6% from analytically estimated values. Notably, this performance was achieved on a dataset of 408 images only. We believe employing this network in experimental settings where high volumes of visual data are collected, such as beam lines, could provide insights into the structural dynamics of different samples.

physics.chem-ph↗

arXiv2021

Quantum state tomography of molecules by ultrafast diffraction

Ultrafast electron diffraction and time-resolved serial crystallography are the basis of the ongoing revolution in capturing at the atomic level of detail the structural dynamics of molecules. However, most experiments employ the classical "ball-and-stick" depictions, and the information of molecular quantum states, such as the density matrix, is missing. Here, we introduce a framework for the preparation and ultrafast coherent diffraction from rotational wave packets of molecules, and we establish a new variant of quantum state tomography for ultrafast electron diffraction to characterize the molecular quantum states. The ability to reconstruct the density matrix of molecules of arbitrary degrees of freedom will provide us with an unprecedentedly clear view of the quantum states of molecules, and enable the visualization of effects dictated by the quantum dynamics of molecules.

quant-ph↗

arXiv2021

Disentangling Dynamical Quantum Coherences in the Fenna-Matthews-Olson Complex

In the primary step of light-harvesting, the energy of a photon is captured in antenna chlorophyll as an exciton. Its efficient conversion to stored chemical potential occurs in the special pair reaction center, which has to be reached by down-hill ultrafast excited state energy transport. The interaction between the chromophores leads to spatial delocalization and quantum coherence effects, the importance of which depends on the coupling between the chlorophylls in relation to the intensity of the fluctuations and reorganization dynamics of the protein matrix, or bath. The latter induce uncorrelated modulations of the site energies, and thus quantum decoherence, and localization of the exciton. Current consensus is that under physiological conditions quantum decoherence occurs on the 10 fs time scale, and quantum coherence plays little role for the observed picosecond energy transfer dynamics. In this work, we reaffirm this from a different point of view by finding that the true onset of electronic quantum coherence only occurs at extremely low temperatures of ~20 K. We have directly determined the exciton coherence times by two-dimensional electronic spectroscopy of the Fenna-Matthew-Olson complex over an extensive temperature range with a supporting theoretical modelling. At 20 K, electronic coherences persist out to 200 fs (close to the antenna) and marginally up to 500 fs at the reaction-center side. It decays markedly faster with modest increases in temperature to become irrelevant above 150 K. This temperature dependence also allows disentangling the previously reported long-lived beatings. We show that they result from mixing vibrational coherences in the electronic ground state ...

cond-mat.other↗

arXiv2021

Utilizing relativistic time dilation for time-resolved studies

Time-resolved studies have so far relied on rapidly triggering a photo-induced dynamic in chemical or biological ions or molecules and subsequently probing them with a beam of fast moving photons or electrons that crosses the studied samples in a short period of time. Hence, the time resolution of the signal is mainly set by the pulse duration of the pump and probe pulses. In this paper we propose a different approach to this problem that has the potential to consistently achieve orders of magnitude higher time resolutions than what is possible with laser technology or electron beam compression methods. Our proposed approach relies on accelerating the sample to a high speed to achieve relativistic time dilation. Probing the time-dilated sample would open up previously inaccessible time resolution domains.

physics.chem-ph↗

arXiv2020

Tomographic imaging of complete quantum state of matter by ultrafast diffraction

With the ability to directly obtain the Wigner function and density matrix of photon states, quantum tomography (QT) has had a significant impact on quantum optics, quantum computing and quantum information. By an appropriate sequence of measurements on the evolution of each degreeof freedom (DOF), the full quantum state of the observed photonic system can be determined. The first proposal to extend the application of QT to reconstruction of complete quantum states of matter wavepackets had generated enormous interest in ultrafast diffraction imaging and pump-probe spectroscopy of molecules. This interest was elevated with the advent of ultrafast electron and X-ray diffraction techniques using electron accelerators and X-ray free electron lasers to add temporal resolution to the observed nuclear and electron distributions. However, the great interest in this area has been tempered by the illustration of an impossibility theorem, known as the dimension problem. Not being able to associate unitary evolution to every DOF of molecular motion, quantum tomography could not be used beyond 1D and categorically excludes most vibrational and all rotational motion of molecules. Here we present a theoretical advance to overcome the notorious dimension problem. Solving this challenging problem is important to push imaging molecular dynamics to the quantum limit. The new theory has solved this problem, which makes quantum tomography a truly useful methodology in ultrafast physics and enables the making of quantum version of a molecular movie. With the new theory, quantum tomography can be finally advanced to a sufficient level to become a general method for reconstructing quantum states of matter, without being limited in one dimension. Our new concept is demonstrated using a simulated dataset of ultrafast diffraction experiment of laser-aligned nitrogen molecules.

quant-ph↗

arXiv2020

Serial Electron Diffraction Data Processing with diffractem and CrystFEL

Serial electron diffraction (SerialED) is an emerging technique, which applies the snapshot data-collection mode of serial X-ray crystallography to three-dimensional electron diffraction (3D ED), forgoing the conventional rotation method. Similarly to serial X-ray crystallography, this approach leads to almost complete absence of radiation damage effects even for the most sensitive samples, and allows for a high level of automation. However, SerialED also necessitates new techniques of data processing, which combine existing pipelines for rotation electron diffraction and serial X-ray crystallography with some more particular solutions for challenges arising in SerialED specifically. Here, we introduce our analysis pipeline for SerialED data, and its implementation using the CrystFEL and diffractem program packages. Detailed examples are provided in extensive supplementary code.

physics.data-an↗

arXiv2020

Photoinduced Vibrations Drive Ultrafast Structural Distortion in Lead Halide Perovskite

Organic-inorganic perovskites have shown great promise towards their application in optoelectronics. The success of this class of material is dictated by the complex interplay between various underlying microscopic phenomena. The structural dynamics of organic cations and the inorganic sublattice after photoexcitation is hypothesized to have a direct effect on the material properties, thereby affecting the overall device performance. Here, we use two-dimensional (2D) electronic spectroscopy to reveal impulsively excited vibrational modes of methylammonium (MA) lead iodide perovskite, which drive the structural distortion after photoexcitation. The vibrational analysis of the measured data allows us to directly monitor the time evolution of the librational motion of the MA cation along with the vibrational coherences of inorganic sublattice. Wavelet analysis of the observed vibrational coherences uncovers the interplay between these two types of phonons. It reveals the coherent generation of the librational motion of the MA cation within ~300 fs, which is complemented by the coherent evolution of the skeletal motion of the inorganic sublattice. We have employed time-dependent density functional theory (TDDFT) to study the atomic motion of the MA cation and the inorganic sublattice during the process of photoexcitation. The TDDFT calculations support our experimental observations of the coherent generation of librational motions in the MA cation and highlight the importance of the anharmonic interaction between the MA cation and the inorganic sublattice. Our calculations predict the transfer of the photoinduced vibrational coherence from the MA cation to the inorganic sublattice, which drives the skeleton motion to form a polaronic state leading to long lifetimes of the charge carriers. This work may lead to novel design principles for next generation of solar cell materials.

physics.chem-ph↗

arXiv2019

Intermolecular Vibrations Drive Ultrafast Singlet Fission

Singlet fission is a spin-allowed exciton multiplication process in organic semiconductors that converts one spin-singlet exciton to two triplet excitons. It offers the potential to enhance solar energy conversion by circumventing the Shockley-Queisser limit on efficiency. Recently, the mechanism of the primary singlet fission process in pentacene and its derivatives have been extensively investigated, however, the nature of the primary ultrafast process in singlet fission is still a matter of debate. Here, we study the singlet fission process in a pentacene film by employing a combination of transient-grating (TG) and two-dimensional (2D) electronic spectroscopy complemented by quantum chemical and nonadiabatic dynamics calculations. The high sensitivity of heterodyne detected TG spectroscopy enabled us to capture the vibrational coherence and to show that it mediates the transition from the singlet excited electronic state to the triplet-pair state. This coherent process is further examined by 2D electronic spectroscopy. Detailed analysis of the experimental data reveals that significant vibronic couplings of a few key modes in the low- and high-frequency region connect the excited singlet and triplet-pair states. Based on quantum chemical calculations, we identify these key intermolecular rocking modes along the longitudinal molecular axis between the pentacene molecules. They play the essential role of an electronic bridge between the singlet and triplet-pair states. Along with high-frequency local vibrations acting as tuning modes, these rocking motions drive the ultrafast dynamics at the multidimensional conical intersection in the singlet fission process.

physics.chem-ph↗

arXiv2019

Does electronic coherence enhance anticorrelated pigment vibrations under realistic conditions?

The light-harvesting efficiency of a photoactive molecular complex is largely determined by the properties of its electronic quantum states. Those, in turn, are influenced by molecular vibrational states of the nuclear degrees of freedom. Here, we reexamine two recently formulated concepts that a coherent vibronic coupling between molecular states would either extend the electronic coherence lifetime or enhance the amplitude of the anticorrelated vibrational mode at longer times. For this, we study a vibronically coupled dimer and calculate the nonlinear two-dimensional (2D) electronic spectra which directly reveal electronic coherence. The timescale of electronic coherence is initially extracted by measuring the anti-diagonal bandwidth of the central peak in the 2D spectrum at zero waiting time. Based on the residual analysis, we identify small-amplitude long-lived oscillations in the cross-peaks, which, however, are solely due to groundstate vibrational coherence, regardless of having resonant or off-resonant conditions. Our studies neither show an enhancement of the electronic quantum coherence nor an enhancement of the anticorrelated vibrational mode by the vibronic coupling under ambient conditions.

physics.bio-ph↗

arXiv2018

Exploring vibrational ladder climbing in vibronic coupling models: Toward experimental observation of a geometric phase signature of a conical intersection

Conical intersections (CIs) have been widely studied using spectroscopic techniques. However, CIs have mainly been identified by rapid internal conversion transitions that take place after the photoexcitation. Such identifications cannot distinguish various types of intersections as well as to separate the actual intersection from an avoided crossing. In this paper, we investigate how ultrafast IR laser pulses can be utilized to stimulate nuclear dynamics revealing geometric phase features associated with CIs. We consider two low-dimensional nonadiabatic models to obtain optimal two- and three-pulse laser sequences for stimulating nuclear dynamics necessary for the CI identification. Our results provide insights on designing non-linear spectroscopic schemes for subsequent probes of the nuclear wavepackets by ultrafast electron diffraction techniques to unambiguously detect CIs in molecules.

physics.chem-ph↗