arXiv subjects

Rafael Gutierrez

Publications and source records attributed to Rafael Gutierrez.

At least 19 recordsLinked to original sources

arXiv2025

Are nonequilibrium effects relevant for chiral molecule discrimination?

Sensing and discriminating between enantiomers of chiral molecules remains a significant challenge in the design of sensor platforms. In the case of chemoresistive sensors, where detection relies on changes in electrical response upon analyte adsorption, the sensor substrate is typically functionalized with chirality sensitive molecular receptors. In this computational study, we investigate whether a chirality-blind substrate, such as a graphene nanoribbon, is still capable of discriminating between enantiomers. To this end, we employ a density-functional parametrized tight-binding method combined with nonequilibrium Green functions. For a small set of chiral amino acids, we demonstrate that accounting for the nonequilibrium response of the device leads to significant differences in the electrical currents of enantiomeric pairs of the order tens of nanoamperes. This effect is further amplified when structural fluctuations of the device's active region are considered (1-2 microAmp). Moreover, we propose new quantum-mechanical quantities for enantioselective discrimination in molecular sensors, with an emphasis on binding features and property-property correlations. Therefore, our work demonstrates the significance of nonequilibrium effects in chiral discrimination, laying the foundation for future investigations addressing the design of chiral molecular sensors.

physics.chem-ph↗

arXiv2025

Chirality-induced Spin-Orbit Coupling and Spin Selectivity

We show that a spinor traveling along a one-dimensional helical path develops a spin-orbit coupling as a result of the curvature of the path. We estimate the magnitude of the associated spin polarization and obtain values typical of many helical molecular structures that showcase the Chirality-induced Spin Selectivity (CISS) effect. We find that this chirality-induced spin-orbit coupling ($\chi$-SOC), in conjunction with broken time-reversal symmetry, may be an important ingredient for the microscopic underpinning of the CISS phenomenon.

cond-mat.mes-hall↗

arXiv2024

Network-theory based modeling of avalanche dynamics in percolative tunnelling networks

Brain-like self-assembled networks can infer and analyze information out of unorganized noisy signals with minimal power consumption. These networks are characterized by spatiotemporal avalanches and their crackling behavior, and their physical models are expected to predict and understand their computational capabilities. Here, we use a network theory-based approach to provide a physical model for percolative tunnelling networks, found in Ag-hBN system, consisting of nodes (atomic clusters) of Ag intercalated in the hBN van der Waals layers. By modeling a single edge plasticity through constitutive electrochemical filament formation, and annihilation through Joule heating, we identify independent parameters that determine the network connectivity. We construct a phase diagram and show that a small region of the parameter space contains signals which are long-range temporally correlated, and only a subset of them contains crackling avalanche dynamics. Physical systems spontaneously selforganize to this region for possibly maximizing the efficiency of information transfer.

cond-mat.dis-nn↗

arXiv2023

Electron Spin Polarization as a Predictor of Chiroptical Activity in Helical Molecules

Chiral structures, breaking spatial inversion symmetry, exhibit non-zero chiroptical activity (COA) due to the interaction between their electric and magnetic responses under external electromagnetic fields, an effect that is otherwise absent in achiral systems. Non-magnetic chiral structures also exhibit Chiral Induced Spin Selectivity (CISS), where spin-polarization (SP) emerges without external magnetic influence. We have obtained a COA-SP connection for a model system of an electron constrained to a helix including spin-orbit coupling (SOC), and in the presence of an external electromagnetic field. Despite its simplicity, this model captures the relevant physics required to address the problem. In particular, our results reveal that the norm of the SP vector can be used as a predictor of COA. In addition to SOC and the breaking of space inversion, a non-vanishing SP requires the breaking of time-reversal symmetry (TRS), as demanded by Onsager's reciprocity. Beyond the relationship between SP and COA, we obtain the novel result that TRS breaking is also necessary to yield a non-vanishing contribution of the SOC to the COA.

cond-mat.mes-hall↗

arXiv2022

Atomistic Modelling of Energy Dissipation in Nanoscale Gears

Molecule- and solid-state gears build the elementary constituents of nanoscale mechanical machineries. Recent experimental advances in fabrication technologies in the field have strongly contributed to better delineate the roadmap towards the ultimate goal of engineering molecular-scale mechanical devices. To complement experimental studies, computer simulations play an invaluable role, since they allow to address, with atomistic resolution, various fundamental issues such as the transmission of angular momentum in nanoscale gear trains and the mechanisms of energy dissipation at such length scales. We review in this chapter our work addressing the latter problem. Our computational approach is based on classical atom-istic Molecular Dynamics simulations. Two basic problems are discussed: (i) the dominant energy dissipation channels of a rotating solid-state nanogear adsorbed on a surface, and (ii) the transmission of rotational motion and frictional processes in a heterogeneous gear pair consisting of a graphene nanodisk and a molecular-scale gear.

cond-mat.mes-hall↗

arXiv2021

A Chirality-Based Quantum Leap

Chiral degrees of freedom occur in matter and in electromagnetic fields and constitute an area of research that is experiencing renewed interest driven by recent observations of the chiral-induced spin selectivity (CISS) effect in chiral molecules and engineered nanomaterials. The CISS effect underpins the fact that charge transport through nanoscopic chiral structures favors a particular electronic spin orientation, resulting in large room-temperature spin polarizations. Observations of the CISS effect suggest opportunities for spin control and for the design and fabrication of room-temperature quantum devices from the bottom up, with atomic-scale precision. Any technology that relies on optimal charge transport, including quantum devices for logic, sensing, and storage, may benefit from chiral quantum properties. These properties can be theoretically and experimentally investigated from a quantum information perspective, which is presently lacking. There are uncharted implications for the quantum sciences once chiral couplings can be engineered to control the storage, transduction, and manipulation of quantum information. This forward-looking perspective provides a survey of the experimental and theoretical fundamentals of chiral-influenced quantum effects, and presents a vision for their future roles in enabling room-temperature quantum technologies.

cond-mat.mes-hall↗

arXiv2021

Role of Exchange Interactions in the Magnetic Response and Intermolecular Recognition of Chiral Molecules

The physical origin of the so-called chirality-induced spin selectivity (CISS) effect has puzzled experimental and theoretical researchers over the past few years. Early experiments were interpreted in terms of unconventional spin-orbit interactions mediated by the helical geometry. However, more recent experimental studies have clearly revealed that electronic exchange interactions also play a key role in the magnetic response of chiral molecules in singlet states. In this investigation, we use spin-polarized closed shell density functional theory calculations to address the influence of exchange contributions to the interaction between helical molecules as well as of helical molecules with magnetized substrates. We show that exchange effects result in differences in the interaction properties with magnetized surfaces, shedding light into the possible origin of two recent important experimental results: enantiomer separation and magnetic exchange force microscopy with AFM tips functionalized with helical peptides.

cond-mat.mes-hall↗

arXiv2020

Surface phonon induced rotational dissipation for nanoscale solid-state gears

Compared to nanoscale friction of translational motion, the mechanisms of rotational friction have received less attention. Such motion becomes an important issue for the miniaturization of mechanical machineries which often involve rotating gears. In this study, molecular dynamics simulations are performed to explore rotational friction for solid-state gears rotating on top of different substrates. In each case, viscous damping of the rotational motion is observed and found to be induced by the pure van-der-Waals interaction between gear and substrate. The influence of different gear sizes and various substrate materials is investigated. Furthermore, the rigidities of the gear and the substrate are found to give rise to different dissipation channels. Finally, it is shown that the dominant contribution to the dissipation is related to the excitation of low-frequency surface-phonons in the substrate.

cond-mat.mes-hall↗

arXiv2020

Understanding the UV luminescence of zinc germanate: The role of native defects

Achieving efficient and stable ultraviolet emission is a challenging goal in optoelectronic devices. Herein, we investigate the UV luminescence of zinc germanate Zn2GeO4 microwires by means of photoluminescence measurements as a function of temperature and excitation conditions. The emitted UV light is composed of two bands (a broad one and a narrow one) associated with the native defects structure. In addition, with the aid of density functional theory (DFT) calculations, the energy positions of the electronic levels related to native defects in Zn2GeO4 have been calculated. In particular, our results support that zinc interstitials are the responsible for the narrow UV band, which is, in turn, split into two components with different temperature dependence behaviour. The origin of the two components is explained on the basis of the particular location of Zn_i in the lattice and agrees with DFT calculations. Furthermore, a kinetic luminescence model is proposed to ascertain the temperature evolution of this UV emission. These results pave the way to exploit defect engineering in achieving functional optoelectronic devices to operate in the UV region.

cond-mat.mtrl-sci↗

arXiv2020

Mechanical transmission of rotation for molecule gears and solid-state gears

The miniaturization of gears towards the nanoscale is a formidable task posing a variety of challenges to current fabrication technologies. In context, the understanding, via computer simulations, of the mechanisms mediating the transfer of rotational motion between nanoscale gears can be of great help to guide the experimental designs. Based on atomistic molecular dynamics simulations in combination with a nearly rigid-body approximation, we study the transmission of rotational motion between molecule gears and solid-state gears, respectively. For the molecule gears under continuous driving, we identify different regimes of rotational motion depending on the magnitude of the external torque. In contrast, the solid-state gears behave like ideal gears with nearly perfect transmission. Furthermore, we simulate the manipulation of the gears by a scanning-probe tip and we find that the mechanical transmission strongly depends on the center of mass distance between gears. A new regime of transmission is found for the solid-state gears.

cond-mat.mes-hall↗

arXiv2020

Effective Hamiltonian model for helically constrained quantum systems within adiabatic perturbation theory: application to the Chirality-Induced Spin Selectivity (CISS) Effect

The chirality-induced spin selectivity (CISS) effect has been confirmed experimentally for a large class of organic molecules. Adequately modeling the effect remains a challenging task, with both phenomenological models and first-principle simulations yielding inconclusive results. Building upon a previously presented model by K. Michaeli and R. Naaman (J. Phys. Chem C 123, 17043 (2019)) we systematically investigate an effective 1-dimensional model derived as the limit of a 3-dimensional quantum system with strong confinement and including spin-orbit coupling. Having a simple analytic structure, such models can be considered a minimal setup for the description of spin-dependent effects. We use adiabatic perturbation theory to provide a mathematically sound approximation procedure applicable to a large class of spin-dependent continuum models. We take advantage of the models simplicity by analyzing its structure to gain a better understanding how the occurrence and magnitude of spin polarization effects relate to the model's parameters and geometry.

cond-mat.mes-hall↗

arXiv2019

Spin-polarized electron transmission in DNA-like systems

The helical distribution of the electronic density in chiral molecules, such as DNA and bacteriorhodopsin, has been suggested to induce a spin-orbit coupling interaction that may lead to the so-called chirality-induced spin selectivity (CISS) effect. Key ingredients for the theoretical modelling are, in this context, the helically shaped potential of the molecule and, concomitantly, a Rashba-like spin-orbit coupling due to the appearance of a magnetic field in the electron reference frame. Symmetries of these models clearly play a crucial role in explaining the observed effect, but a thorough analysis has been largely ignored in the literature. In this work, we present a study of these symmetries and how they can be exploited to enhance chiral-induced spin selectivity in helical molecular systems.

cond-mat.mes-hall↗

arXiv2019

Towards synthetic neural networks: Can artificial electrochemical neurons be coupled with artificial memristive synapses?

The enormous amount of data generated nowadays worldwide is increasingly triggering the search for unconventional and more efficient ways of processing and classifying information, eventually able to transcend the conventional von-Neumann-Turing computational central dogma. It is, therefore, greatly appealing to draw inspiration from less conventional but computationally more powerful systems such as the neural architecture of the human brain. This neuromorphic route has the potential to become one of the most influential and long-lasting paradigms in the field of unconventional computing. The material-based workhorse for current hardware platforms is largely based on standard CMOS technologies, intrinsically following the above mentioned von-Neumann-Turing prescription; we do know, however, that the brain hardware operates in a massively parallel way through a densely interconnected physical network of neurons. This requires challenging the intrinsic definition of the single units and the architecture of computing machines. (...)

nlin.AO↗

arXiv2019

Thermal bridging of graphene nanosheets via covalent molecular junctions. a Non-Equilibrium Green Functions Density Functional Tight-Binding study

Despite the uniquely high thermal conductivity of graphene is well known, the exploitation of graphene into thermally conductive nanomaterials and devices is limited by the inefficiency of thermal contacts between the individual nanosheets. A fascinating yet experimentally challenging route to enhance thermal conductance at contacts between graphene nanosheets is through molecular junctions, allowing covalently connecting nanosheets otherwise interacting only via weak Van der Waals forces. Beside the bare existence of covalent connections, the choice of molecular structures to be used as thermal junctions should be guided by their vibrational properties, in terms of phonon transfer through the molecular junction. In this paper, density functional tight-binding combined with Green functions formalism was applied for the calculation of thermal conductance and phonon spectra of several different aliphatic and aromatic molecular junctions between graphene nanosheets. Effect of molecular junction length, conformation, and aromaticity were studied in detail and correlated with phonon tunnelling spectra. The theoretical insight provided by this work can guide future experimental studies to select suitable molecular junctions in order to enhance the thermal transport by suppressing the interfacial thermal resistances, particularly attractive for various systems, including graphene nanopapers and graphene polymer nanocomposites, as well as related devices. In a broader view, the possibility to design molecular junctions to control phonon transport currently appears as an efficient way to produce phononic devices and controlling heat management in nanostructures.

cond-mat.mes-hall↗

arXiv2018

Molecular and Ionic Dipole Effects on the Electronic Properties of Si/SiO2 Grafted Alkylamine Monolayers

In this work, we demonstrate the tunability of electronic properties of Si/SiO2 substrate by molecular and ionic surface modifications. The change in the electronic properties such as the work function (WF) and electron affinity (EA), were experimentally measured by contact potential difference (CPD) technique and theoretically supported by DFT calculations. We attribute these molecular electronic effects mainly to the variations of molecular and surface dipoles of the ionic and neutral species. We have previously showed that for the alkylhalide monolayers, changing the tail group from Cl to I decreased the work function of the substrate. Here we report on the opposite trend of WF changes, i.e. increase of the WF, obtained by using the anions of those halides from Cl$^{-}$ to I$^{-}$. This trend was observed on self-assembled alkylamonium halide (-NH3$^{+}$ X$^{-}$, where X$^{-}$=Cl$^{-}$, Br$^{-}$, I$^{-}$) monolayers modified substrates. The monolayer' formation was supported by Ellipsometry measurements, X-Ray Photoelectron Spectroscopy and Atomic Force Microscopy. Comparison of the theoretical and experimental data suggests that ionic surface dipole depends mainly on the polarizability and the position of the counter halide anion along with the organization and packaging of the layer. The described ionic modification can be easily used for facile tailoring and design of the electronic properties Si/SiO2 substrates for various device applications.

physics.chem-ph↗

arXiv2015

Quantum interference and contact effects in dangling bond loops on H-Si(100) surfaces

We perform electronic structure and quantum transport studies of dangling bond loops created on H-passivated Si(100) surfaces and connected to carbon nanoribbon leads. We model loops with straight and zigzag topologies as well as with varying lenght with an efficient density-functional based tight-binding electronic structure approach (DFTB) . Varying the length of the loop or the lead coupling position we induce the drastic change in the transmission due to the electron interference. Depending if the constructive or destructive interference within the loop takes place we can noticeably change transport properties by few orders of magnitude. These results propose a way to engineer the closed electronically driven nanocircuits with high transport properties and exploit the interference effects in order to control them.

cond-mat.mes-hall↗

arXiv2013

Control of quantum interference in molecular junctions: Understanding the origin of Fano and anti- resonances

We investigate within a coarse-grained model the conditions leading to the appearance of Fano resonances or anti-resonances in the conductance spectrum of a generic molecular junction with a side group (T-junction). By introducing a simple graphical representation (parabolic diagram), we can easily visualize the relation between the different electronic parameters determining the regimes where Fano resonances or anti-resonances in the low-energy conductance spectrum can be expected. The results obtained within the coarse-grained model are validated using density-functional based quantum transport calculations in realistic T-shaped molecular junctions.

cond-mat.mes-hall↗

arXiv2010

Organic Zener Diodes: Tunneling across the Gap in Organic Semiconductor Materials

Organic Zener diodes with a precisely adjustable reverse breakdown from -3 V to -15 V without any influence on the forward current-voltage curve are realized. This is accomplished by controlling the width of the charge depletion zone in a pin-diode with an accuracy of one nanometer independently of the doping concentration and the thickness of the intrinsic layer. The breakdown effect with its exponential current voltage behavior and a weak temperature dependence is explained by a tunneling mechanism across the HOMO-LUMO gap of neigh- boring molecules. The experimental data are confirmed by a minimal Hamiltonian model approach, including coherent tunneling and incoherent hopping processes as possible charge transport pathways through the effective device region.

cond-mat.mtrl-sci↗