arXiv subjects

Reyer Zwiggelaar

Publications and source records attributed to Reyer Zwiggelaar.

7 recordsLinked to original sources

arXiv2026

BreathGRU: A Novel Semi-Supervised Bidirectional Gated Recurrent Unit Framework for Speech and Breath Segmentation for Respiratory Audio

Speech-breath segmentation is a fundamental preprocessing step in respiratory audio analysis, enabling applications such as respiratory acoustic biomarker extraction, lung function prediction and disease monitoring. Existing approaches, including threshold methods, Fourier Transform-based techniques, and unsupervised and pretrained voice activity detection (VAD) models, primarily focus on speech detection and often classify breathing events as non-speech or silence, limiting their applicability for precise breath detection. To address this limitation, we propose BreathGRU, a semi-supervised Bidirectional Gated Recurrent Unit (BiGRU) framework specifically designed for speech-breath segmentation. The proposed framework combines frame-level acoustic feature extraction with bidirectional recurrent modelling, pseudo-label refinement and duration-constrained Segmental Viterbi decoding to produce speech and breath segmentation. BreathGRU was evaluated against the existing approaches, using manually annotated recordings. Performance was assessed using event-based, time-based, overlap-based, duration-based and boundary-based segmentation metrics. Experiment results demonstrated that BreathGRU achieved the highest breath event recall (0.83), the lowest onset-localisation error (0.14s) and the highest Mean Match Intersection over Union (0.81), with competitive overall segmentation performance compared to large pretrained VAD models like Silero. Qualitative evaluation on manually annotated recordings further showed close agreement between BreathGRU and manual annotation, with better breath detection compared to Silero. These findings demonstrate that explicit breath event modelling provides advantages over general-purpose VAD models and establish BreathGRU as an effective speech-breath segmentation framework which can be applied for respiratory audio analysis and pulmonary healthcare applications.

cs.SD↗

arXiv2026

TCSA-UDA: Text-Driven Cross-Semantic Alignment for Unsupervised Domain Adaptation in Medical Image Segmentation

Unsupervised domain adaptation (UDA) for medical image segmentation remains challenging due to substantial domain shifts across imaging modalities, such as CT and MRI. Although recent vision-language representation learning methods have shown promise in medical image analysis, their role in cross-modality UDA segmentation remains underexplored. To address this problem, we propose TCSA-UDA, a Text-driven Cross-Semantic Alignment framework that uses modality-aware textual prompting to guide domain-invariant visual representation learning. Specifically, we introduce a vision-language covariance cosine loss (VLCoL) that aligns inter-class visual feature relationships with text-derived semantic relationships, encouraging the image encoder to learn semantically structured and modality-robust representations. In addition, we incorporate a prototype alignment module to reduce residual class-level discrepancies between source and target domains by aligning high-level class prototypes. Extensive experiments on cross-modality cardiac, abdominal, and brain tumor segmentation benchmarks demonstrate that TCSA-UDA consistently improves adaptation performance and outperforms state-of-the-art UDA methods. These results highlight the potential of language-driven semantic guidance for domain-adaptive medical image segmentation. The code is available at https://github.com/lalitmaurya47/TCSA_UDA

cs.CV↗

arXiv2026

Traceable Trust for action-ready artificial intelligence in bioscience

Artificial intelligence (AI) is becoming part of the working infrastructure of the biosciences. AI models can predict biomolecular structures, design proteins, rank variants, annotate images, recommend strains and optimise experimental conditions. We argue that the decision to use an AI output to guide laboratory action is a key juncture for trustworthy research and should follow a defined, reviewable process. We propose Traceable Trust as a proportionate assessment-and-design framework for this output-to-action boundary. It asks what evidence supports the output, what capability is being claimed, what agency has been delegated, what threshold authorises action, who can override it and how outcomes inform later decisions. We illustrate the framework through three case studies spanning ecosystem resources, project design and laboratory action. Together, the cases show how trust can be documented where AI outputs begin to shape scientific work.

cs.CY↗

arXiv2025

Graph-Attention Network with Adversarial Domain Alignment for Robust Cross-Domain Facial Expression Recognition

Cross-domain facial expression recognition (CD-FER) remains difficult due to severe domain shift between training and deployment data. We propose Graph-Attention Network with Adversarial Domain Alignment (GAT-ADA), a hybrid framework that couples a ResNet-50 as backbone with a batch-level Graph Attention Network (GAT) to model inter-sample relations under shift. Each mini-batch is cast as a sparse ring graph so that attention aggregates cross-sample cues that are informative for adaptation. To align distributions, GAT-ADA combines adversarial learning via a Gradient Reversal Layer (GRL) with statistical alignment using CORAL and MMD. GAT-ADA is evaluated under a standard unsupervised domain adaptation protocol: training on one labeled source (RAF-DB) and adapting to multiple unlabeled targets (CK+, JAFFE, SFEW 2.0, FER2013, and ExpW). GAT-ADA attains 74.39% mean cross-domain accuracy. On RAF-DB to FER2013, it reaches 98.0% accuracy, corresponding to approximately a 36-point improvement over the best baseline we re-implemented with the same backbone and preprocessing.

cs.CV↗

arXiv2025

MACMD: Multi-dilated Contextual Attention and Channel Mixer Decoding for Medical Image Segmentation

Medical image segmentation faces challenges due to variations in anatomical structures. While convolutional neural networks (CNNs) effectively capture local features, they struggle with modeling long-range dependencies. Transformers mitigate this issue with self-attention mechanisms but lack the ability to preserve local contextual information. State-of-the-art models primarily follow an encoder-decoder architecture, achieving notable success. However, two key limitations remain: (1) Shallow layers, which are closer to the input, capture fine-grained details but suffer from information loss as data propagates through deeper layers. (2) Inefficient integration of local details and global context between the encoder and decoder stages. To address these challenges, we propose the MACMD-based decoder, which enhances attention mechanisms and facilitates channel mixing between encoder and decoder stages via skip connections. This design leverages hierarchical dilated convolutions, attention-driven modulation, and a cross channel-mixing module to capture long-range dependencies while preserving local contextual details, essential for precise medical image segmentation. We evaluated our approach using multiple transformer encoders on both binary and multi-organ segmentation tasks. The results demonstrate that our method outperforms state-of-the-art approaches in terms of Dice score and computational efficiency, highlighting its effectiveness in achieving accurate and robust segmentation performance. The code available at https://github.com/lalitmaurya47/MACMD

cs.CV↗

arXiv2021

SHREC 2021: Retrieval and classification of protein surfaces equipped with physical and chemical properties

This paper presents the methods that have participated in the SHREC 2021 contest on retrieval and classification of protein surfaces on the basis of their geometry and physicochemical properties. The goal of the contest is to assess the capability of different computational approaches to identify different conformations of the same protein, or the presence of common sub-parts, starting from a set of molecular surfaces. We addressed two problems: defining the similarity solely based on the surface geometry or with the inclusion of physicochemical information, such as electrostatic potential, amino acid hydrophobicity, and the presence of hydrogen bond donors and acceptors. Retrieval and classification performances, with respect to the single protein or the existence of common sub-sequences, are analysed according to a number of information retrieval indicators.

q-bio.BM↗

arXiv2019

Automated Mammogram Analysis with a Deep Learning Pipeline

Current deep learning based detection models tackle detection and segmentation tasks by casting them to pixel or patch-wise classification. To automate the initial mass lesion detection and segmentation on the whole mammographic images and avoid the computational redundancy of patch-based and sliding window approaches, the conditional generative adversarial network (cGAN) was used in this study. Subsequently, feeding the detected regions to the trained densely connected network (DenseNet), the binary classification of benign versus malignant was predicted. We used a combination of publicly available mammographic data repositories to train the pipeline, while evaluating the model's robustness toward our clinically collected repository, which was unseen to the pipeline.

eess.IV↗