arXiv subjects

Rich Caruana

Publications and source records attributed to Rich Caruana.

At least 37 records · Page 2Linked to original sources

arXiv2022

Estimating Discontinuous Time-Varying Risk Factors and Treatment Benefits for COVID-19 with Interpretable ML

Treatment protocols, disease understanding, and viral characteristics changed over the course of the COVID-19 pandemic; as a result, the risks associated with patient comorbidities and biomarkers also changed. We add to the conversation regarding inflammation, hemostasis and vascular function in COVID-19 by performing a time-varying observational analysis of over 4000 patients hospitalized for COVID-19 in a New York City hospital system from March 2020 to August 2021. To perform this analysis, we apply tree-based generalized additive models with temporal interactions which recover discontinuous risk changes caused by discrete protocols changes. We find that the biomarkers of thrombosis increasingly predicted mortality from March 2020 to August 2021, while the association between biomarkers of inflammation and thrombosis weakened. Beyond COVID-19, this presents a straightforward methodology to estimate unknown and discontinuous time-varying effects.

cs.LG↗

arXiv2022

Using Interpretable Machine Learning to Predict Maternal and Fetal Outcomes

Most pregnancies and births result in a good outcome, but complications are not uncommon and when they do occur, they can be associated with serious implications for mothers and babies. Predictive modeling has the potential to improve outcomes through better understanding of risk factors, heightened surveillance, and more timely and appropriate interventions, thereby helping obstetricians deliver better care. For three types of complications we identify and study the most important risk factors using Explainable Boosting Machine (EBM), a glass box model, in order to gain intelligibility: (i) Severe Maternal Morbidity (SMM), (ii) shoulder dystocia, and (iii) preterm preeclampsia. While using the interpretability of EBM's to reveal surprising insights into the features contributing to risk, our experiments show EBMs match the accuracy of other black-box ML methods such as deep neural nets and random forests.

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arXiv2022

Interpretability, Then What? Editing Machine Learning Models to Reflect Human Knowledge and Values

Machine learning (ML) interpretability techniques can reveal undesirable patterns in data that models exploit to make predictions--potentially causing harms once deployed. However, how to take action to address these patterns is not always clear. In a collaboration between ML and human-computer interaction researchers, physicians, and data scientists, we develop GAM Changer, the first interactive system to help domain experts and data scientists easily and responsibly edit Generalized Additive Models (GAMs) and fix problematic patterns. With novel interaction techniques, our tool puts interpretability into action--empowering users to analyze, validate, and align model behaviors with their knowledge and values. Physicians have started to use our tool to investigate and fix pneumonia and sepsis risk prediction models, and an evaluation with 7 data scientists working in diverse domains highlights that our tool is easy to use, meets their model editing needs, and fits into their current workflows. Built with modern web technologies, our tool runs locally in users' web browsers or computational notebooks, lowering the barrier to use. GAM Changer is available at the following public demo link: https://interpret.ml/gam-changer.

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arXiv2022

Extracting Expert's Goals by What-if Interpretable Modeling

Although reinforcement learning (RL) has tremendous success in many fields, applying RL to real-world settings such as healthcare is challenging when the reward is hard to specify and no exploration is allowed. In this work, we focus on recovering clinicians' rewards in treating patients. We incorporate the what-if reasoning to explain the clinician's treatments based on their potential future outcomes. We use generalized additive models (GAMs) - a class of accurate, interpretable models - to recover the reward. In both simulation and a real-world hospital dataset, we show our model outperforms baselines. Finally, our model's explanations match several clinical guidelines when treating patients while we found the commonly-used linear model often contradicts them.

cs.LG↗

arXiv2022

NODE-GAM: Neural Generalized Additive Model for Interpretable Deep Learning

Deployment of machine learning models in real high-risk settings (e.g. healthcare) often depends not only on the model's accuracy but also on its fairness, robustness, and interpretability. Generalized Additive Models (GAMs) are a class of interpretable models with a long history of use in these high-risk domains, but they lack desirable features of deep learning such as differentiability and scalability. In this work, we propose a neural GAM (NODE-GAM) and neural GA$^2$M (NODE-GA$^2$M) that scale well and perform better than other GAMs on large datasets, while remaining interpretable compared to other ensemble and deep learning models. We demonstrate that our models find interesting patterns in the data. Lastly, we show that we improve model accuracy via self-supervised pre-training, an improvement that is not possible for non-differentiable GAMs.

cs.LG↗

arXiv2022

Differentially Private Estimation of Heterogeneous Causal Effects

Estimating heterogeneous treatment effects in domains such as healthcare or social science often involves sensitive data where protecting privacy is important. We introduce a general meta-algorithm for estimating conditional average treatment effects (CATE) with differential privacy (DP) guarantees. Our meta-algorithm can work with simple, single-stage CATE estimators such as S-learner and more complex multi-stage estimators such as DR and R-learner. We perform a tight privacy analysis by taking advantage of sample splitting in our meta-algorithm and the parallel composition property of differential privacy. In this paper, we implement our approach using DP-EBMs as the base learner. DP-EBMs are interpretable, high-accuracy models with privacy guarantees, which allow us to directly observe the impact of DP noise on the learned causal model. Our experiments show that multi-stage CATE estimators incur larger accuracy loss than single-stage CATE or ATE estimators and that most of the accuracy loss from differential privacy is due to an increase in variance, not biased estimates of treatment effects.

stat.ML↗

arXiv2021

GAM Changer: Editing Generalized Additive Models with Interactive Visualization

Recent strides in interpretable machine learning (ML) research reveal that models exploit undesirable patterns in the data to make predictions, which potentially causes harms in deployment. However, it is unclear how we can fix these models. We present our ongoing work, GAM Changer, an open-source interactive system to help data scientists and domain experts easily and responsibly edit their Generalized Additive Models (GAMs). With novel visualization techniques, our tool puts interpretability into action -- empowering human users to analyze, validate, and align model behaviors with their knowledge and values. Built using modern web technologies, our tool runs locally in users' computational notebooks or web browsers without requiring extra compute resources, lowering the barrier to creating more responsible ML models. GAM Changer is available at https://interpret.ml/gam-changer.

cs.LG↗

arXiv2021

Neural Additive Models: Interpretable Machine Learning with Neural Nets

Deep neural networks (DNNs) are powerful black-box predictors that have achieved impressive performance on a wide variety of tasks. However, their accuracy comes at the cost of intelligibility: it is usually unclear how they make their decisions. This hinders their applicability to high stakes decision-making domains such as healthcare. We propose Neural Additive Models (NAMs) which combine some of the expressivity of DNNs with the inherent intelligibility of generalized additive models. NAMs learn a linear combination of neural networks that each attend to a single input feature. These networks are trained jointly and can learn arbitrarily complex relationships between their input feature and the output. Our experiments on regression and classification datasets show that NAMs are more accurate than widely used intelligible models such as logistic regression and shallow decision trees. They perform similarly to existing state-of-the-art generalized additive models in accuracy, but are more flexible because they are based on neural nets instead of boosted trees. To demonstrate this, we show how NAMs can be used for multitask learning on synthetic data and on the COMPAS recidivism data due to their composability, and demonstrate that the differentiability of NAMs allows them to train more complex interpretable models for COVID-19.

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arXiv2021

Dropout as a Regularizer of Interaction Effects

We examine Dropout through the perspective of interactions. This view provides a symmetry to explain Dropout: given $N$ variables, there are ${N \choose k}$ possible sets of $k$ variables to form an interaction (i.e. $\mathcal{O}(N^k)$); conversely, the probability an interaction of $k$ variables survives Dropout at rate $p$ is $(1-p)^k$ (decaying with $k$). These rates effectively cancel, and so Dropout regularizes against higher-order interactions. We prove this perspective analytically and empirically. This perspective of Dropout as a regularizer against interaction effects has several practical implications: (1) higher Dropout rates should be used when we need stronger regularization against spurious high-order interactions, (2) caution should be exercised when interpreting Dropout-based explanations and uncertainty measures, and (3) networks trained with Input Dropout are biased estimators. We also compare Dropout to other regularizers and find that it is difficult to obtain the same selective pressure against high-order interactions.

cs.LG↗

arXiv2021

Accuracy, Interpretability, and Differential Privacy via Explainable Boosting

We show that adding differential privacy to Explainable Boosting Machines (EBMs), a recent method for training interpretable ML models, yields state-of-the-art accuracy while protecting privacy. Our experiments on multiple classification and regression datasets show that DP-EBM models suffer surprisingly little accuracy loss even with strong differential privacy guarantees. In addition to high accuracy, two other benefits of applying DP to EBMs are: a) trained models provide exact global and local interpretability, which is often important in settings where differential privacy is needed; and b) the models can be edited after training without loss of privacy to correct errors which DP noise may have introduced.

cs.LG↗

arXiv2021

How Interpretable and Trustworthy are GAMs?

Generalized additive models (GAMs) have become a leading modelclass for interpretable machine learning. However, there are many algorithms for training GAMs, and these can learn different or even contradictory models, while being equally accurate. Which GAM should we trust? In this paper, we quantitatively and qualitatively investigate a variety of GAM algorithms on real and simulated datasets. We find that GAMs with high feature sparsity (only using afew variables to make predictions) can miss patterns in the data and be unfair to rare subpopulations. Our results suggest that inductive bias plays a crucial role in what interpretable models learn and that tree-based GAMs represent the best balance of sparsity, fidelity and accuracy and thus appear to be the most trustworthy GAM.

cs.LG↗

arXiv2021

Sub-seasonal forecasting with a large ensemble of deep-learning weather prediction models

We present an ensemble prediction system using a Deep Learning Weather Prediction (DLWP) model that recursively predicts key atmospheric variables with six-hour time resolution. This model uses convolutional neural networks (CNNs) on a cubed sphere grid to produce global forecasts. The approach is computationally efficient, requiring just three minutes on a single GPU to produce a 320-member set of six-week forecasts at 1.4° resolution. Ensemble spread is primarily produced by randomizing the CNN training process to create a set of 32 DLWP models with slightly different learned weights. Although our DLWP model does not forecast precipitation, it does forecast total column water vapor, and it gives a reasonable 4.5-day deterministic forecast of Hurricane Irma. In addition to simulating mid-latitude weather systems, it spontaneously generates tropical cyclones in a one-year free-running simulation. Averaged globally and over a two-year test set, the ensemble mean RMSE retains skill relative to climatology beyond two-weeks, with anomaly correlation coefficients remaining above 0.6 through six days. Our primary application is to subseasonal-to-seasonal (S2S) forecasting at lead times from two to six weeks. Current forecast systems have low skill in predicting one- or 2-week-average weather patterns at S2S time scales. The continuous ranked probability score (CRPS) and the ranked probability skill score (RPSS) show that the DLWP ensemble is only modestly inferior in performance to the European Centre for Medium Range Weather Forecasts (ECMWF) S2S ensemble over land at lead times of 4 and 5-6 weeks. At shorter lead times, the ECMWF ensemble performs better than DLWP.

physics.ao-ph↗

arXiv2020

Purifying Interaction Effects with the Functional ANOVA: An Efficient Algorithm for Recovering Identifiable Additive Models

Models which estimate main effects of individual variables alongside interaction effects have an identifiability challenge: effects can be freely moved between main effects and interaction effects without changing the model prediction. This is a critical problem for interpretability because it permits "contradictory" models to represent the same function. To solve this problem, we propose pure interaction effects: variance in the outcome which cannot be represented by any smaller subset of features. This definition has an equivalence with the Functional ANOVA decomposition. To compute this decomposition, we present a fast, exact algorithm that transforms any piecewise-constant function (such as a tree-based model) into a purified, canonical representation. We apply this algorithm to Generalized Additive Models with interactions trained on several datasets and show large disparity, including contradictions, between the effects before and after purification. These results underscore the need to specify data distributions and ensure identifiability before interpreting model parameters.

stat.ML↗

arXiv2020

Improving data-driven global weather prediction using deep convolutional neural networks on a cubed sphere

We present a significantly-improved data-driven global weather forecasting framework using a deep convolutional neural network (CNN) to forecast several basic atmospheric variables on a global grid. New developments in this framework include an offline volume-conservative mapping to a cubed-sphere grid, improvements to the CNN architecture, and the minimization of the loss function over multiple steps in a prediction sequence. The cubed-sphere remapping minimizes the distortion on the cube faces on which convolution operations are performed and provides natural boundary conditions for padding in the CNN. Our improved model produces weather forecasts that are indefinitely stable and produce realistic weather patterns at lead times of several weeks and longer. For short- to medium-range forecasting, our model significantly outperforms persistence, climatology, and a coarse-resolution dynamical numerical weather prediction (NWP) model. Unsurprisingly, our forecasts are worse than those from a high-resolution state-of-the-art operational NWP system. Our data-driven model is able to learn to forecast complex surface temperature patterns from few input atmospheric state variables. On annual time scales, our model produces a realistic seasonal cycle driven solely by the prescribed variation in top-of-atmosphere solar forcing. Although it is currently less accurate than operational weather forecasting models, our data-driven CNN executes much faster than those models, suggesting that machine learning could prove to be a valuable tool for large-ensemble forecasting.

physics.ao-ph↗

arXiv2019

InterpretML: A Unified Framework for Machine Learning Interpretability

InterpretML is an open-source Python package which exposes machine learning interpretability algorithms to practitioners and researchers. InterpretML exposes two types of interpretability - glassbox models, which are machine learning models designed for interpretability (ex: linear models, rule lists, generalized additive models), and blackbox explainability techniques for explaining existing systems (ex: Partial Dependence, LIME). The package enables practitioners to easily compare interpretability algorithms by exposing multiple methods under a unified API, and by having a built-in, extensible visualization platform. InterpretML also includes the first implementation of the Explainable Boosting Machine, a powerful, interpretable, glassbox model that can be as accurate as many blackbox models. The MIT licensed source code can be downloaded from github.com/microsoft/interpret.

cs.LG↗

arXiv2019

Efficient Forward Architecture Search

We propose a neural architecture search (NAS) algorithm, Petridish, to iteratively add shortcut connections to existing network layers. The added shortcut connections effectively perform gradient boosting on the augmented layers. The proposed algorithm is motivated by the feature selection algorithm forward stage-wise linear regression, since we consider NAS as a generalization of feature selection for regression, where NAS selects shortcuts among layers instead of selecting features. In order to reduce the number of trials of possible connection combinations, we train jointly all possible connections at each stage of growth while leveraging feature selection techniques to choose a subset of them. We experimentally show this process to be an efficient forward architecture search algorithm that can find competitive models using few GPU days in both the search space of repeatable network modules (cell-search) and the space of general networks (macro-search). Petridish is particularly well-suited for warm-starting from existing models crucial for lifelong-learning scenarios.

cs.LG↗

arXiv2019

Axiomatic Interpretability for Multiclass Additive Models

Generalized additive models (GAMs) are favored in many regression and binary classification problems because they are able to fit complex, nonlinear functions while still remaining interpretable. In the first part of this paper, we generalize a state-of-the-art GAM learning algorithm based on boosted trees to the multiclass setting, and show that this multiclass algorithm outperforms existing GAM learning algorithms and sometimes matches the performance of full complexity models such as gradient boosted trees. In the second part, we turn our attention to the interpretability of GAMs in the multiclass setting. Surprisingly, the natural interpretability of GAMs breaks down when there are more than two classes. Naive interpretation of multiclass GAMs can lead to false conclusions. Inspired by binary GAMs, we identify two axioms that any additive model must satisfy in order to not be visually misleading. We then develop a technique called Additive Post-Processing for Interpretability (API), that provably transforms a pre-trained additive model to satisfy the interpretability axioms without sacrificing accuracy. The technique works not just on models trained with our learning algorithm, but on any multiclass additive model, including multiclass linear and logistic regression. We demonstrate the effectiveness of API on a 12-class infant mortality dataset.

cs.LG↗

arXiv2018

Distill-and-Compare: Auditing Black-Box Models Using Transparent Model Distillation

Black-box risk scoring models permeate our lives, yet are typically proprietary or opaque. We propose Distill-and-Compare, a model distillation and comparison approach to audit such models. To gain insight into black-box models, we treat them as teachers, training transparent student models to mimic the risk scores assigned by black-box models. We compare the student model trained with distillation to a second un-distilled transparent model trained on ground-truth outcomes, and use differences between the two models to gain insight into the black-box model. Our approach can be applied in a realistic setting, without probing the black-box model API. We demonstrate the approach on four public data sets: COMPAS, Stop-and-Frisk, Chicago Police, and Lending Club. We also propose a statistical test to determine if a data set is missing key features used to train the black-box model. Our test finds that the ProPublica data is likely missing key feature(s) used in COMPAS.

stat.ML↗