arXiv subjects

Rui Yan

Publications and source records attributed to Rui Yan.

At least 55 records · Page 3Linked to original sources

arXiv2026

Controlled LLM Training on Spectral Sphere

Scaling large models requires optimization strategies that ensure rapid convergence grounded in stability. Maximal Update Parametrization ($\boldsymbolμ$P) provides a theoretical safeguard for width-invariant $Θ(1)$ activation control, whereas emerging optimizers like Muon are only ``half-aligned'' with these constraints: they control updates but allow weights to drift. To address this limitation, we introduce the \textbf{Spectral Sphere Optimizer (SSO)}, which enforces strict module-wise spectral constraints on both weights and their updates. By deriving the steepest descent direction on the spectral sphere, SSO realizes a fully $\boldsymbolμ$P-aligned optimization process. To enable large-scale training, we implement SSO as an efficient parallel algorithm within Megatron. Through extensive pretraining on diverse architectures, including Dense 1.7B, MoE 8B-A1B, and 200-layer DeepNet models, SSO consistently outperforms AdamW and Muon. Furthermore, we observe significant practical stability benefits, including improved MoE router load balancing, suppressed outliers, and strictly bounded activations.

cs.LG↗

arXiv2026

Skywork-Reward-V2: Scaling Preference Data Curation via Human-AI Synergy

Despite the critical role of reward models (RMs) in Reinforcement Learning from Human Feedback (RLHF), current state-of-the-art open RMs perform poorly on most existing evaluation benchmarks, failing to capture nuanced human preferences. We hypothesize that this brittleness stems primarily from limitations in preference datasets, which are often narrowly scoped, synthetically labeled, or lack rigorous quality control. To address these challenges, we present SynPref-40M, a large-scale preference dataset comprising 40 million preference pairs. To enable data curation at scale, we design a human-AI synergistic two-stage pipeline that leverages the complementary strengths of human annotation quality and AI scalability. In this pipeline, humans provide verified annotations, while LLMs perform automatic curation based on human guidance. Training on this preference mixture, we introduce Skywork-Reward-V2, a suite of eight reward models ranging from 0.6B to 8B parameters, trained on a carefully curated subset of 26 million preference pairs from SynPref-40M. We demonstrate that Skywork-Reward-V2 is versatile across a wide range of capabilities, including alignment with human preferences, objective correctness, safety, resistance to stylistic biases, and best-of-N scaling. These reward models achieve state-of-the-art performance across seven major reward model benchmarks, outperform generative reward models, and demonstrate strong downstream performance. Ablation studies confirm that effectiveness stems not only from data scale but also from high-quality curation. The Skywork-Reward-V2 series represents substantial progress in open reward models, demonstrating how human-AI curation synergy can unlock significantly higher data quality.

cs.CL↗

arXiv2026

QCAgent: An agentic framework for quality-controllable pathology report generation from whole slide image

Recent methods for pathology report generation from whole-slide image (WSI) are capable of producing slide-level diagnostic descriptions but fail to ground fine-grained statements in localized visual evidence. Furthermore, they lack control over which diagnostic details to include and how to verify them. Inspired by emerging agentic analysis paradigms and the diagnostic workflow of pathologists,who selectively examine multiple fields of view, we propose QCAgent, an agentic framework for quality-controllable WSI report generation. The core innovations of this framework are as follows: (i) it incorporates a customized critique mechanism guided by a user-defined checklist specifying required diagnostic details and constraints; (ii) it re-identifies informative regions in the WSI based on the critique feedback and text-patch semantic retrieval, a process that iteratively enriches and reconciles the report. Experiments demonstrate that by making report requirements explicitly prompt-defined, constraint-aware, and verifiable through evidence-grounded refinement, QCAgent enables controllable generation of clinically meaningful and high-coverage pathology reports from WSI.

cs.CV↗

arXiv2026

Spatio-temporal Decoupled Knowledge Compensator for Few-Shot Action Recognition

Few-Shot Action Recognition (FSAR) is a challenging task that requires recognizing novel action categories with a few labeled videos. Recent works typically apply semantically coarse category names as auxiliary contexts to guide the learning of discriminative visual features. However, such context provided by the action names is too limited to provide sufficient background knowledge for capturing novel spatial and temporal concepts in actions. In this paper, we propose DiST, an innovative Decomposition-incorporation framework for FSAR that makes use of decoupled Spatial and Temporal knowledge provided by large language models to learn expressive multi-granularity prototypes. In the decomposition stage, we decouple vanilla action names into diverse spatio-temporal attribute descriptions (action-related knowledge). Such commonsense knowledge complements semantic contexts from spatial and temporal perspectives. In the incorporation stage, we propose Spatial/Temporal Knowledge Compensators (SKC/TKC) to discover discriminative object-level and frame-level prototypes, respectively. In SKC, object-level prototypes adaptively aggregate important patch tokens under the guidance of spatial knowledge. Moreover, in TKC, frame-level prototypes utilize temporal attributes to assist in inter-frame temporal relation modeling. These learned prototypes thus provide transparency in capturing fine-grained spatial details and diverse temporal patterns. Experimental results show DiST achieves state-of-the-art results on five standard FSAR datasets.

cs.CV↗

arXiv2026

Uncovering spatial tissue domains and cell types in spatial omics through cross-scale profiling of cellular and genomic interactions

Cellular identity and function are linked to both their intrinsic genomic makeup and extrinsic spatial context within the tissue microenvironment. Spatial transcriptomics (ST) offers an unprecedented opportunity to study this, providing in situ gene expression profiles at single-cell resolution and illuminating the spatial and functional organization of cells within tissues. However, a significant hurdle remains: ST data is inherently noisy, large, and structurally complex. This complexity makes it intractable for existing computational methods to effectively capture the interplay between spatial interactions and intrinsic genomic relationships, thus limiting our ability to discern critical biological patterns. Here, we present CellScape, a deep learning framework designed to overcome these limitations for high-performance ST data analysis and pattern discovery. CellScape jointly models cellular interactions in tissue space and genomic relationships among cells, producing comprehensive representations that seamlessly integrate spatial signals with underlying gene regulatory mechanisms. This technique uncovers biologically informative patterns that improve spatial domain segmentation and supports comprehensive spatial cellular analyses across diverse transcriptomics datasets, offering an accurate and versatile framework for deep analysis and interpretation of ST data.w

cs.LG↗

arXiv2026

Cross-domain EEG-based Emotion Recognition with Contrastive Learning

Electroencephalogram (EEG)-based emotion recognition is vital for affective computing but faces challenges in feature utilization and cross-domain generalization. This work introduces EmotionCLIP, which reformulates recognition as an EEG-text matching task within the CLIP framework. A tailored backbone, SST-LegoViT, captures spatial, spectral, and temporal features using multi-scale convolution and Transformer modules. Experiments on SEED and SEED-IV datasets show superior cross-subject accuracies of 88.69\% and 73.50\%, and cross-time accuracies of 88.46\% and 77.54\%, outperforming existing models. Results demonstrate the effectiveness of multimodal contrastive learning for robust EEG emotion recognition. The code is available at https://github.com/Departure2021/EmotionCLIP.

cs.CV↗

arXiv2026

A radiation two-phase flow model for simulating plasma-liquid interactions

In laser-produced plasma (LPP) extreme ultraviolet (EUV) sources, deformation of a tin droplet into an optimal target shape is governed by its interaction with a pre-pulse laser-generated plasma. This interaction is mediated by a transient ablation pressure, whose complex spatio-temporal evolution remains experimentally inaccessible. Existing modeling approaches are limited: Empirical pressure-impulse models neglect dynamic plasma feedback, while advanced radiation-hydrodynamic codes often fail to resolve late-time droplet hydrodynamics. To bridge this gap, we propose a radiation two-phase flow model based on a diffuse interface methodology. The model integrates radiation hydrodynamics for the plasma with the Euler equations for a weakly compressible liquid, extending a five-equation diffuse interface formulation to incorporate radiation transport, thermal conduction, and ionization. This formulation enforces pressure and velocity equilibrium across the diffuse interface region, with closure models constructed to ensure correct jump conditions at interfaces and asymptotically recover the pure-phase equations in bulk regions. Then, we apply the model to simulate a benchmark pre-pulse scenario, where a 50 micron tin droplet is irradiated by a 10 ns laser pulse. The simulations capture the rapid plasma expansion and subsequent inertial flattening of the droplet into a thin, curved sheet over microsecond timescales. Notably, the model reproduces experimentally observed features (such as an axial jet) rarely replicated in prior simulations. Quantitative agreement with experimental data for sheet dimensions and velocity validates the approach. The proposed model self-consistently couples laser-plasma physics with compressible droplet dynamics, providing a powerful tool for fundamental studies of plasma-liquid interactions in LPP-EUV source optimization.

physics.plasm-ph↗

arXiv2025

Spatiotemporal-Untrammelled Mixture of Experts for Multi-Person Motion Prediction

Comprehensively and flexibly capturing the complex spatio-temporal dependencies of human motion is critical for multi-person motion prediction. Existing methods grapple with two primary limitations: i) Inflexible spatiotemporal representation due to reliance on positional encodings for capturing spatiotemporal information. ii) High computational costs stemming from the quadratic time complexity of conventional attention mechanisms. To overcome these limitations, we propose the Spatiotemporal-Untrammelled Mixture of Experts (ST-MoE), which flexibly explores complex spatio-temporal dependencies in human motion and significantly reduces computational cost. To adaptively mine complex spatio-temporal patterns from human motion, our model incorporates four distinct types of spatiotemporal experts, each specializing in capturing different spatial or temporal dependencies. To reduce the potential computational overhead while integrating multiple experts, we introduce bidirectional spatiotemporal Mamba as experts, each sharing bidirectional temporal and spatial Mamba in distinct combinations to achieve model efficiency and parameter economy. Extensive experiments on four multi-person benchmark datasets demonstrate that our approach not only outperforms state-of-art in accuracy but also reduces model parameter by 41.38% and achieves a 3.6x speedup in training. The code is available at https://github.com/alanyz106/ST-MoE.

cs.CV↗

arXiv2025

From Retrieval to Reasoning: A Framework for Cyber Threat Intelligence NER with Explicit and Adaptive Instructions

The automation of Cyber Threat Intelligence (CTI) relies heavily on Named Entity Recognition (NER) to extract critical entities from unstructured text. Currently, Large Language Models (LLMs) primarily address this task through retrieval-based In-Context Learning (ICL). This paper analyzes this mainstream paradigm, revealing a fundamental flaw: its success stems not from global semantic similarity but largely from the incidental overlap of entity types within retrieved examples. This exposes the limitations of relying on unreliable implicit induction. To address this, we propose TTPrompt, a framework shifting from implicit induction to explicit instruction. TTPrompt maps the core concepts of CTI's Tactics, Techniques, and Procedures (TTPs) into an instruction hierarchy: formulating task definitions as Tactics, guiding strategies as Techniques, and annotation guidelines as Procedures. Furthermore, to handle the adaptability challenge of static guidelines, we introduce Feedback-driven Instruction Refinement (FIR). FIR enables LLMs to self-refine guidelines by learning from errors on minimal labeled data, adapting to distinct annotation dialects. Experiments on five CTI NER benchmarks demonstrate that TTPrompt consistently surpasses retrieval-based baselines. Notably, with refinement on just 1% of training data, it rivals models fine-tuned on the full dataset. For instance, on LADDER, its Micro F1 of 71.96% approaches the fine-tuned baseline, and on the complex CTINexus, its Macro F1 exceeds the fine-tuned ACLM model by 10.91%.

cs.CR↗

arXiv2025

Vision-centric Token Compression in Large Language Model

Real-world applications are stretching context windows to hundreds of thousand of tokens while Large Language Models (LLMs) swell from billions to trillions of parameters. This dual expansion send compute and memory costs skyrocketing, making token compression indispensable. We introduce Vision Centric Token Compression (Vist), a slow-fast compression framework that mirrors human reading: the fast path renders distant tokens into images, letting a frozen, lightweight vision encoder skim the low-salience context; the slow path feeds the proximal window into the LLM for fine-grained reasoning. A Probability-Informed Visual Enhancement (PVE) objective masks high-frequency tokens during training, steering the Resampler to concentrate on semantically rich regions-just as skilled reader gloss over function words. On eleven in-context learning benchmarks, Vist achieves the same accuracy with 2.3 times fewer tokens, cutting FLOPs by 16% and memory by 50%. This method delivers remarkable results, outperforming the strongest text encoder-based compression method CEPE by 7.6% on average over benchmarks like TriviaQA, NQ, PopQA, NLUI, and CLIN, setting a new standard for token efficiency in LLMs. The project is at https://github.com/CSU-JPG/VIST.

cs.CL↗

arXiv2025

HunyuanOCR Technical Report

This paper presents HunyuanOCR, a commercial-grade, open-source, and lightweight (1B parameters) Vision-Language Model (VLM) dedicated to OCR tasks. The architecture comprises a Native Vision Transformer (ViT) and a lightweight LLM connected via an MLP adapter. HunyuanOCR demonstrates superior performance, outperforming commercial APIs, traditional pipelines, and larger models (e.g., Qwen3-VL-4B). Specifically, it surpasses current public solutions in perception tasks (Text Spotting, Parsing) and excels in semantic tasks (IE, Text Image Translation), securing first place in the ICDAR 2025 DIMT Challenge (Small Model Track). Furthermore, it achieves state-of-the-art (SOTA) results on OCRBench among VLMs with fewer than 3B parameters. HunyuanOCR achieves breakthroughs in three key aspects: 1) Unifying Versatility and Efficiency: We implement comprehensive support for core capabilities including spotting, parsing, IE, VQA, and translation within a lightweight framework. This addresses the limitations of narrow "OCR expert models" and inefficient "General VLMs". 2) Streamlined End-to-End Architecture: Adopting a pure end-to-end paradigm eliminates dependencies on pre-processing modules (e.g., layout analysis). This fundamentally resolves error propagation common in traditional pipelines and simplifies system deployment. 3) Data-Driven and RL Strategies: We confirm the critical role of high-quality data and, for the first time in the industry, demonstrate that Reinforcement Learning (RL) strategies yield significant performance gains in OCR tasks. HunyuanOCR is officially open-sourced on HuggingFace. We also provide a high-performance deployment solution based on vLLM, placing its production efficiency in the top tier. We hope this model will advance frontier research and provide a solid foundation for industrial applications.

cs.CV↗

arXiv2025

Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey

The integration of biomolecular modeling with natural language (BL) has emerged as a promising interdisciplinary area at the intersection of artificial intelligence, chemistry and biology. This approach leverages the rich, multifaceted descriptions of biomolecules contained within textual data sources to enhance our fundamental understanding and enable downstream computational tasks such as biomolecule property prediction. The fusion of the nuanced narratives expressed through natural language with the structural and functional specifics of biomolecules described via various molecular modeling techniques opens new avenues for comprehensively representing and analyzing biomolecules. By incorporating the contextual language data that surrounds biomolecules into their modeling, BL aims to capture a holistic view encompassing both the symbolic qualities conveyed through language as well as quantitative structural characteristics. In this review, we provide an extensive analysis of recent advancements achieved through cross modeling of biomolecules and natural language. (1) We begin by outlining the technical representations of biomolecules employed, including sequences, 2D graphs, and 3D structures. (2) We then examine in depth the rationale and key objectives underlying effective multi-modal integration of language and molecular data sources. (3) We subsequently survey the practical applications enabled to date in this developing research area. (4) We also compile and summarize the available resources and datasets to facilitate future work. (5) Looking ahead, we identify several promising research directions worthy of further exploration and investment to continue advancing the field. The related resources and contents are updating in https://github.com/QizhiPei/Awesome-Biomolecule-Language-Cross-Modeling.

cs.CL↗

arXiv2025

Histomorphology-Guided Prototypical Multi-Instance Learning for Breast Cancer WSI Classification

Histomorphology is crucial in cancer diagnosis. However, existing whole slide image (WSI) classification methods struggle to effectively incorporate histomorphology information, limiting their ability to capture key pathological features. Particularly when the number of instances within a bag is large and their features are complex, it becomes challenging to accurately identify instances decisive for the bag label, making these methods prone to interference from ambiguous instances. To address this limitation, we propose a novel Histomorphology-Guided Prototypical Multi-Instance Learning (HGPMIL) framework that explicitly learns histomorphology-guided prototypical representations by incorporating tumor cellularity, cellular morphology, and tissue architecture. Specifically, our approach consists of three key components: (1) estimating the importance of tumor-related histomorphology information at patch-level based on medical prior knowledge; (2) generating representative prototypes through histomorphology-prototypical clustering; and (3) enabling WSI classification through histomorphology-guided prototypical aggregation. HGPMIL adjusts the decision boundary by incorporating histomorphological importance to reduce instance label uncertainty, thereby reversely optimizing the bag-level boundary. Experimental results demonstrate its effectiveness, achieving high diagnostic accuracy for molecular subtyping, cancer subtyping and survival analysis. The code will be made available at https://github.com/Badgewho/HMDMIL.

cs.CV↗

arXiv2025

Making Every Head Count: Sparse Attention Without the Speed-Performance Trade-off

The design of Large Language Models (LLMs) has long been hampered by a fundamental conflict within their core attention mechanism: its remarkable expressivity is built upon a computational complexity of O(H N^2) that grows quadratically with the context size (N) and linearly with the number of heads (H). This standard implementation harbors significant computational redundancy, as all heads independently compute attention over the same sequence space. Existing sparse methods, meanwhile, often trade information integrity for computational efficiency. To resolve this efficiency-performance trade-off, we propose SPAttention, whose core contribution is the introduction of a new paradigm we term Principled Structural Sparsity. SPAttention does not merely drop connections but instead reorganizes the computational task by partitioning the total attention workload into balanced, non-overlapping distance bands, assigning each head a unique segment. This approach transforms the multi-head attention mechanism from H independent O(N^2) computations into a single, collaborative O(N^2) computation, fundamentally reducing complexity by a factor of H. The structured inductive bias compels functional specialization among heads, enabling a more efficient allocation of computational resources from redundant modeling to distinct dependencies across the entire sequence span. Our work demonstrates that thoughtfully designed structural sparsity can serve as an effective inductive bias that simultaneously improves both computational efficiency and model performance, opening a new avenue for the architectural design of next-generation, high-performance LLMs.

cs.LG↗

arXiv2025

ACE-F: A Cross Embodiment Foldable System with Force Feedback for Dexterous Teleoperation

Teleoperation systems are essential for efficiently collecting diverse and high-quality robot demonstration data, especially for complex, contact-rich tasks. However, current teleoperation platforms typically lack integrated force feedback, cross-embodiment generalization, and portable, user-friendly designs, limiting their practical deployment. To address these limitations, we introduce ACE-F, a cross embodiment foldable teleoperation system with integrated force feedback. Our approach leverages inverse kinematics (IK) combined with a carefully designed human-robot interface (HRI), enabling users to capture precise and high-quality demonstrations effortlessly. We further propose a generalized soft-controller pipeline integrating PD control and inverse dynamics to ensure robot safety and precise motion control across diverse robotic embodiments. Critically, to achieve cross-embodiment generalization of force feedback without additional sensors, we innovatively interpret end-effector positional deviations as virtual force signals, which enhance data collection and enable applications in imitation learning. Extensive teleoperation experiments confirm that ACE-F significantly simplifies the control of various robot embodiments, making dexterous manipulation tasks as intuitive as operating a computer mouse. The system is open-sourced at: https://acefoldable.github.io/

cs.RO↗

arXiv2025

Fusion of Multi-scale Heterogeneous Pathology Foundation Models for Whole Slide Image Analysis

Whole slide image (WSI) analysis has emerged as an increasingly essential technique in computational pathology. Recent advances in the pathology foundation models (FMs) have demonstrated significant advantages in deriving meaningful patch-level or slide-level multi-scale features from WSIs. However, current pathology FMs have exhibited substantial heterogeneity caused by diverse private training datasets and different network architectures. This heterogeneity introduces performance variability when we utilize the features from different FMs in the downstream tasks. To fully explore the advantages of multiple FMs effectively, in this work, we propose a novel framework for the fusion of multi-scale heterogeneous pathology FMs, called FuseCPath, yielding a model with a superior ensemble performance. The main contributions of our framework can be summarized as follows: (i) To guarantee the representativeness of the training patches, we propose a multi-view clustering-based method to filter out the discriminative patches via multiple FMs' embeddings. (ii) To effectively fuse the patch-level FMs, we devise a cluster-level re-embedding strategy to online capture patch-level local features. (iii) To effectively fuse the slide-level FMs, we devise a collaborative distillation strategy to explore the connections between slide-level FMs. Extensive experiments demonstrate that the proposed FuseCPath achieves state-of-the-art performance across multiple tasks on diverse datasets.

cs.CV↗

arXiv2025

MPD-SGR: Robust Spiking Neural Networks with Membrane Potential Distribution-Driven Surrogate Gradient Regularization

The surrogate gradient (SG) method has shown significant promise in enhancing the performance of deep spiking neural networks (SNNs), but it also introduces vulnerabilities to adversarial attacks. Although spike coding strategies and neural dynamics parameters have been extensively studied for their impact on robustness, the critical role of gradient magnitude, which reflects the model's sensitivity to input perturbations, remains underexplored. In SNNs, the gradient magnitude is primarily determined by the interaction between the membrane potential distribution (MPD) and the SG function. In this study, we investigate the relationship between the MPD and SG and their implications for improving the robustness of SNNs. Our theoretical analysis reveals that reducing the proportion of membrane potentials lying within the gradient-available range of the SG function effectively mitigates the sensitivity of SNNs to input perturbations. Building upon this insight, we propose a novel MPD-driven surrogate gradient regularization (MPD-SGR) method, which enhances robustness by explicitly regularizing the MPD based on its interaction with the SG function. Extensive experiments across multiple image classification benchmarks and diverse network architectures confirm that the MPD-SGR method significantly enhances the resilience of SNNs to adversarial perturbations and exhibits strong generalizability across diverse network configurations, SG functions, and spike encoding schemes.

cs.LG↗

arXiv2025

DS-ATGO: Dual-Stage Synergistic Learning via Forward Adaptive Threshold and Backward Gradient Optimization for Spiking Neural Networks

Brain-inspired spiking neural networks (SNNs) are recognized as a promising avenue for achieving efficient, low-energy neuromorphic computing. Direct training of SNNs typically relies on surrogate gradient (SG) learning to estimate derivatives of non-differentiable spiking activity. However, during training, the distribution of neuronal membrane potentials varies across timesteps and progressively deviates toward both sides of the firing threshold. When the firing threshold and SG remain fixed, this may lead to imbalanced spike firing and diminished gradient signals, preventing SNNs from performing well. To address these issues, we propose a novel dual-stage synergistic learning algorithm that achieves forward adaptive thresholding and backward dynamic SG. In forward propagation, we adaptively adjust thresholds based on the distribution of membrane potential dynamics (MPD) at each timestep, which enriches neuronal diversity and effectively balances firing rates across timesteps and layers. In backward propagation, drawing from the underlying association between MPD, threshold, and SG, we dynamically optimize SG to enhance gradient estimation through spatio-temporal alignment, effectively mitigating gradient information loss. Experimental results demonstrate that our method achieves significant performance improvements. Moreover, it allows neurons to fire stable proportions of spikes at each timestep and increases the proportion of neurons that obtain gradients in deeper layers.

cs.NE↗