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Ruiyi Zhang

Publications and source records attributed to Ruiyi Zhang.

At least 37 records · Page 2Linked to original sources

CachePrune: Teaching LLMs What Not to Follow via KV-Cache Editing

Large Language Models (LLMs) are susceptible to indirect prompt injection attacks, where the model inadvertently responds to instructions injected into the prompt context. This vulnerability stems from LLMs' inability to distinguish between data and instructions within a prompt. We propose CachePrune, which defends against this attack by identifying and pruning neurons associated with instruction-following during KV cache encoding of the prompt context. The pruning steers the LLM toward interpreting the context purely as data rather than as instructions to follow. To identify these neurons, we introduce a neural attribution mechanism guided by a preferential attribution loss, and theoretically connect this loss to an upper bound of the Direct Preference Optimization (DPO) objective. Further, we improve the fidelity of neural attribution by leveraging an observed triggering effect in instruction-following. Our approach does not interfere with prompt formatting or incur test-time overhead during response generation. Experiments show that CachePrune significantly reduces the attack success rate while preserving the LLM's ability to follow user instructions.

cs.CR↗

BioTool: A Comprehensive Tool-Calling Dataset for Enhancing Biomedical Capabilities of Large Language Models

Despite the success of large language models (LLMs) on general-purpose tasks, their performance in highly specialized domains such as biomedicine remains unsatisfactory. A key limitation is the inability of LLMs to effectively leverage biomedical tools, which clinical experts and biomedical researchers rely on extensively in daily workflows. While recent general-domain tool-calling datasets have substantially improved the capabilities of LLM agents, existing efforts in the biomedical domain largely rely on in-context learning and restrict models to a small set of tools. To address this gap, we introduce BioTool, a comprehensive biomedical tool-calling dataset designed for fine-tuning LLMs. BioTool comprises 34 frequently used tools collected from the NCBI, Ensembl, and UniProt databases, along with 7,040 high-quality, human-verified query-API call pairs spanning variation, genomics, proteomics, evolution, and general biology. Fine-tuning a 4-billion-parameter LLM on BioTool yields substantial improvements in biomedical tool-calling performance, outperforming cutting-edge commercial LLMs such as GPT-5.1. Furthermore, human expert evaluations demonstrate that integrating a BioTool-fine-tuned tool caller significantly improves downstream answer quality compared to the same LLM without tool usage, highlighting the effectiveness of BioTool in enhancing the biomedical capabilities of LLMs. The full dataset and evaluation code are available at https://github.com/gxx27/BioTool

cs.CL↗

A Survey on LLM-based Conversational User Simulation

User simulation has long played a vital role in computer science due to its potential to support a wide range of applications. Language, as the primary medium of human communication, forms the foundation of social interaction and behavior. Consequently, simulating conversational behavior has become a key area of study. Recent advancements in large language models (LLMs) have significantly catalyzed progress in this domain by enabling high-fidelity generation of synthetic user conversation. In this paper, we survey recent advancements in LLM-based conversational user simulation. We introduce a novel taxonomy covering user granularity and simulation objectives. Additionally, we systematically analyze core techniques and evaluation methodologies. We aim to keep the research community informed of the latest advancements in conversational user simulation and to further facilitate future research by identifying open challenges and organizing existing work under a unified framework.

cs.CL↗

Lizard: An Efficient Linearization Framework for Large Language Models

We propose Lizard, a linearization framework that transforms pretrained Transformer-based Large Language Models (LLMs) into subquadratic architectures. Transformers faces severe computational and memory bottlenecks with long sequences due to the quadratic complexity of softmax attention and the growing Key-Value (KV) cache that makes inference memory-bound by context length. Lizard addresses these limitations by introducing a subquadratic attention mechanism that closely approximates softmax attention while preserving model quality. Unlike prior linearization methods constrained by fixed, non-adaptive structures, Lizard augments the architecture with compact, learnable modules that enable adaptive memory control and robust length generalization. Moreover, we introduce a hardwareaware algorithm that solves numerical instability in gated attention to accelerate training. Extensive experiments show that Lizard achieves near-lossless recovery of its teacher model's performance, significantly outperforming previous methods by up to 9.4 - 24.5 points on the 5-shot MMLU benchmark and demonstrating superior associative recall.

cs.CL↗

AIBuildAI: An AI Agent for Automatically Building AI Models

AI models underpin modern intelligent systems, driving advances across science, medicine, finance, and technology. Yet developing high-performing AI models remains a labor-intensive process that requires expert practitioners to iteratively design architectures, engineer representations, implement training pipelines and refine approaches through empirical evaluation. Existing AutoML methods partially alleviate this burden but remain limited to narrow aspects such as hyperparameter optimization and model selection within predefined search spaces, leaving the full development lifecycle largely dependent on human expertise. To address this gap, we introduce AIBuildAI, an AI agent that automatically builds AI models from a task description and training data. AIBuildAI adopts a hierarchical agent architecture in which a manager agent coordinates three specialized sub-agents: a designer for modeling strategy, a coder for implementation and debugging, and a tuner for training and performance optimization. Each sub-agent is itself a large language model (LLM) based agent capable of multi-step reasoning and tool use, enabling end-to-end automation of the AI model development process that goes beyond the scope of existing AutoML approaches. We evaluate AIBuildAI on MLE-Bench, a benchmark of realistic Kaggle-style AI development tasks spanning visual, textual, time-series and tabular modalities. AIBuildAI ranks first on MLE-Bench with a medal rate of 63.1%, outperforming all existing baseline methods and matching the capability of highly experienced AI engineers. These results demonstrate that hierarchical agent systems can automate the full AI model development process from task specification to deployable model, suggesting a pathway toward broadly accessible AI development with minimal human intervention.

cs.AI↗

Anticipatory Planning for Multimodal AI Agents

Recent advances in multimodal agents have improved computer-use interaction and tool-usage, yet most existing systems remain reactive, optimizing actions in isolation without reasoning about future states or long-term goals. This limits planning coherence and prevents agents from reliably solving high-level, multi-step tasks. We introduce TraceR1, a two-stage reinforcement learning framework that explicitly trains anticipatory reasoning by forecasting short-horizon trajectories before execution. The first stage performs trajectory-level reinforcement learning with rewards that enforce global consistency across predicted action sequences. The second stage applies grounded reinforcement fine-tuning, using execution feedback from frozen tool agents to refine step-level accuracy and executability. TraceR1 is evaluated across seven benchmarks, covering online computer-use, offline computer-use benchmarks, and multimodal tool-use reasoning tasks, where it achieves substantial improvements in planning stability, execution robustness, and generalization over reactive and single-stage baselines. These results show that anticipatory trajectory reasoning is a key principle for building multimodal agents that can reason, plan, and act effectively in complex real-world environments.

cs.AI↗

InfinityStory: Unlimited Video Generation with World Consistency and Character-Aware Shot Transitions

Generating long-form storytelling videos with consistent visual narratives remains a significant challenge in video synthesis. We present a novel framework, dataset, and a model that address three critical limitations: background consistency across shots, seamless multi-subject shot-to-shot transitions, and scalability to hour-long narratives. Our approach introduces a background-consistent generation pipeline that maintains visual coherence across scenes while preserving character identity and spatial relationships. We further propose a transition-aware video synthesis module that generates smooth shot transitions for complex scenarios involving multiple subjects entering or exiting frames, going beyond the single-subject limitations of prior work. To support this, we contribute with a synthetic dataset of 10,000 multi-subject transition sequences covering underrepresented dynamic scene compositions. On VBench, InfinityStory achieves the highest Background Consistency (88.94), highest Subject Consistency (82.11), and the best overall average rank (2.80), showing improved stability, smoother transitions, and better temporal coherence.

cs.CV↗

SimpleOCR: Rendering Visualized Questions to Teach MLLMs to Read

Despite the rapid advancements in Multimodal Large Language Models (MLLMs), a critical question regarding their visual grounding mechanism remains unanswered: do these models genuinely ``read'' text embedded in images, or do they merely rely on parametric shortcuts in the text prompt? In this work, we diagnose this issue by introducing the Visualized-Question (VQ) setting, where text queries are rendered directly onto images to structurally mandate visual engagement. Our diagnostic experiments on Qwen2.5-VL reveal a startling capability-utilization gap: despite possessing strong OCR capabilities, models suffer a performance degradation of up to 12.7% in the VQ setting, exposing a deep-seated ``modality laziness.'' To bridge this gap, we propose SimpleOCR, a plug-and-play training strategy that imposes a structural constraint on the learning process. By transforming training samples into the VQ format with randomized styles, SimpleOCR effectively invalidates text-based shortcuts, compelling the model to activate and optimize its visual text extraction pathways. Empirically, SimpleOCR yields robust gains without architectural modifications. On four representative OOD benchmarks, it surpasses the base model by 5.4% and GRPO based on original images by 2.7%, while exhibiting extreme data efficiency, achieving superior performance with 30x fewer samples (8.5K) than recent RL-based methods. Furthermore, its plug-and-play nature allows seamless integration with advanced RL strategies like NoisyRollout to yield complementary improvements. Code is available at https://github.com/aiming-lab/SimpleOCR.

cs.CV↗

Models Under SCOPE: Scalable and Controllable Routing via Pre-hoc Reasoning

Model routing chooses which language model to use for each query. By sending easy queries to cheaper models and hard queries to stronger ones, it can significantly reduce inference cost while maintaining high accuracy. However, most existing routers treat this as a fixed choice among a small set of models, which makes them hard to adapt to new models or changing budget constraints. In this paper, we propose SCOPE (Scalable and Controllable Outcome Performance Estimator), a routing framework that goes beyond model selection by predicting their cost and performance. Trained with reinforcement learning, SCOPE makes reasoning-based predictions by retrieving how models behave on similar problems, rather than relying on fixed model names, enabling it to work with new, unseen models. Moreover, by explicitly predicting how accurate and how expensive a model will be, it turns routing into a dynamic decision problem, allowing users to easily control the trade-off between accuracy and cost. Experiments show that SCOPE is more than just a cost-saving tool. It flexibly adapts to user needs: it can boost accuracy by up to 25.7% when performance is the priority, or cut costs by up to 95.1% when efficiency matters most.

cs.LG↗

DAJ: Data-Reweighted LLM Judge for Test-Time Scaling in Code Generation

Test-time scaling for code generation commonly relies on Best-of-N selection, in which multiple candidate solutions are sampled from a base model, and the best one is selected by an LLM judge. However, training reliable LLM judges is challenging due to severe distribution shifts, including imbalances between easy and hard problems, mismatches between training tasks and evaluation benchmarks, and trajectory mismatch arising from training data generated by cheaper models whose behavior differs from that of inference-time models. We propose DAJ, a reasoning-based LLM judge trained with verifiable rewards under a bi-level data-reweighted learning framework. The proposed framework learns data-importance weights (either domain-level or instance-level) to optimize generalization performance on a held-out meta set aligned with target benchmarks. To the best of our knowledge, this is the first application of data reweighting to LLM-as-a-Judge training for test-time scaling. Our approach automatically emphasizes hard problems, in-distribution samples, and trajectory-aligned data, without relying on hand-crafted heuristics. Empirically, DAJ achieves state-of-the-art performance on LiveCodeBench and BigCodeBench, outperforming strong test-time scaling baselines as well as leading proprietary models.

cs.LG↗

FunPRM: Function-as-Step Process Reward Model with Meta Reward Correction for Code Generation

Code generation is a core application of large language models (LLMs), yet LLMs still frequently fail on complex programming tasks. Given its success in mathematical reasoning, test-time scaling approaches such as Process Reward Model (PRM)-based Best-of-N selection offer a promising way to improve performance. However, existing PRMs remain ineffective for code generation due to the lack of meaningful step decomposition in code and the noise of Monte Carlo-estimated partial-solution correctness scores (rewards). To address these challenges, we propose FunPRM. FunPRM prompts LLMs to encourage modular code generation organized into functions, with functions treated as PRM reasoning steps. Furthermore, FunPRM introduces a novel meta-learning-based reward correction mechanism that leverages clean final-solution rewards obtained via a unit-test-based evaluation system to purify noisy partial-solution rewards. Experiments on LiveCodeBench and BigCodeBench demonstrate that FunPRM consistently outperforms existing test-time scaling methods across five base LLMs, notably achieving state-of-the-art performance on LiveCodeBench when combined with O4-mini. Furthermore, FunPRM produces code that is more readable and reusable for developers.

cs.LG↗

MiLDEdit: Reasoning-Based Multi-Layer Design Document Editing

Real-world design documents (e.g., posters) are inherently multi-layered, combining decoration, text, and images. Editing them from natural-language instructions requires fine-grained, layer-aware reasoning to identify relevant layers and coordinate modifications. Prior work largely overlooks multi-layer design document editing, focusing instead on single-layer image editing or multi-layer generation, which assume a flat canvas and lack the reasoning needed to determine what and where to modify. To address this gap, we introduce the Multi-Layer Document Editing Agent (MiLDEAgent), a reasoning-based framework that combines an RL-trained multimodal reasoner for layer-wise understanding with an image editor for targeted modifications. To systematically benchmark this setting, we introduce the MiLDEBench, a human-in-the-loop corpus of over 20K design documents paired with diverse editing instructions. The benchmark is complemented by a task-specific evaluation protocol, MiLDEEval, which spans four dimensions including instruction following, layout consistency, aesthetics, and text rendering. Extensive experiments on 14 open-source and 2 closed-source models reveal that existing approaches fail to generalize: open-source models often cannot complete multi-layer document editing tasks, while closed-source models suffer from format violations. In contrast, MiLDEAgent achieves strong layer-aware reasoning and precise editing, significantly outperforming all open-source baselines and attaining performance comparable to closed-source models, thereby establishing the first strong baseline for multi-layer document editing.

cs.CV↗

DreamPRM-Code: Function-as-Step Process Reward Model with Label Correction for LLM Coding

Process Reward Models (PRMs) have become essential for improving Large Language Models (LLMs) via test-time scaling, yet their effectiveness in coding remains limited due to the lack of meaningful step decompositions in code and the noise of Monte-Carlo-generated partial labels. We propose DreamPRM-Code, a coding-focused PRM that treats functions as reasoning steps using a Chain-of-Function prompting strategy to induce modular code generation, enabling PRM training and application analogous to mathematical reasoning tasks. To address label noise, DreamPRM-Code introduces a meta-learning-based correction mechanism that leverages clean final-solution unit-test labels and performs bi-level optimization to refine intermediate labels. Applying on test-time scaling, DreamPRM-Code achieved state-of-the-art performance on LiveCodeBench with 80.9 pass@1 rate, surpassing OpenAI o4-mini.

cs.LG↗

More Than the Final Answer: Improving Visual Extraction and Logical Consistency in Vision-Language Models

Reinforcement learning from verifiable rewards (RLVR) has recently been extended from text-only LLMs to vision-language models (VLMs) to elicit long-chain multimodal reasoning. However, RLVR-trained VLMs still exhibit two persistent failure modes: inaccurate visual extraction (missing or hallucinating details) and logically inconsistent chains-of-thought, largely because verifiable signals supervise only the final answer. We propose PeRL-VL (Perception and Reasoning Learning for Vision-Language Models), a decoupled framework that separately improves visual perception and textual reasoning on top of RLVR. For perception, PeRL-VL introduces a VLM-based description reward that scores the model's self-generated image descriptions for faithfulness and sufficiency. For reasoning, PeRL-VL adds a text-only Reasoning SFT stage on logic-rich chain-of-thought data, enhancing coherence and logical consistency independently of vision. Across diverse multimodal benchmarks, PeRL-VL improves average Pass@1 accuracy from 63.3% (base Qwen2.5-VL-7B) to 68.8%, outperforming standard RLVR, text-only reasoning SFT, and naive multimodal distillation from GPT-4o.

cs.CV↗

SNPeek: Side-Channel Analysis for Privacy Applications on Confidential VMs

Confidential virtual machines (CVMs) based on trusted execution environments (TEEs) enable new privacy-preserving solutions. Yet, they leave side-channel leakage outside their threat model, shifting the responsibility of mitigating such attacks to developers. However, mitigations are either not generic or too slow for practical use, and developers currently lack a systematic, efficient way to measure and compare leakage across real-world deployments. In this paper, we present SNPeek, an open-source toolkit that offers configurable side-channel tracing primitives on production AMD SEV-SNP hardware and couples them with statistical and machine-learning-based analysis pipelines for automated leakage estimation. We apply SNPeek to three representative workloads that are deployed on CVMs to enhance user privacy-private information retrieval, private heavy hitters, and Wasm user-defined functions-and uncover previously unnoticed leaks, including a covert channel that exfiltrates data at 497 kbit/s. The results show that SNPeek pinpoints vulnerabilities and guides low-overhead mitigations based on oblivious memory and differential privacy, giving practitioners a practical path to deploy CVMs with meaningful confidentiality guarantees.

cs.CR↗

OIDA-QA: A Multimodal Benchmark for Analyzing the Opioid Industry Documents Archive

The opioid crisis represents a significant moment in public health that reveals systemic shortcomings across regulatory systems, healthcare practices, corporate governance, and public policy. Analyzing how these interconnected systems simultaneously failed to protect public health requires innovative analytic approaches for exploring the vast amounts of data and documents disclosed in the UCSF-JHU Opioid Industry Documents Archive (OIDA). The complexity, multimodal nature, and specialized characteristics of these healthcare-related legal and corporate documents necessitate more advanced methods and models tailored to specific data types and detailed annotations, ensuring the precision and professionalism in the analysis. In this paper, we tackle this challenge by organizing the original dataset according to document attributes and constructing a benchmark with 400k training documents and 10k for testing. From each document, we extract rich multimodal information-including textual content, visual elements, and layout structures-to capture a comprehensive range of features. Using multiple AI models, we then generate a large-scale dataset comprising 360k training QA pairs and 10k testing QA pairs. Building on this foundation, we develop domain-specific multimodal Large Language Models (LLMs) and explore the impact of multimodal inputs on task performance. To further enhance response accuracy, we incorporate historical QA pairs as contextual grounding for answering current queries. Additionally, we incorporate page references within the answers and introduce an importance-based page classifier, further improving the precision and relevance of the information provided. Preliminary results indicate the improvements with our AI assistant in document information extraction and question-answering tasks. The dataset is available at: https://huggingface.co/datasets/opioidarchive/oida-qa

cs.AI↗

VipAct: Visual-Perception Enhancement via Specialized VLM Agent Collaboration and Tool-use

While vision-language models (VLMs) have demonstrated remarkable performance across various tasks combining textual and visual information, they continue to struggle with fine-grained visual perception tasks that require detailed pixel-level analysis. Effectively eliciting comprehensive reasoning from VLMs on such intricate visual elements remains an open challenge. In this paper, we present VipAct, an agent framework that enhances VLMs by integrating multi-agent collaboration and vision expert models, enabling more precise visual understanding and comprehensive reasoning. VipAct consists of an orchestrator agent, which manages task requirement analysis, planning, and coordination, along with specialized agents that handle specific tasks such as image captioning and vision expert models that provide high-precision perceptual information. This multi-agent approach allows VLMs to better perform fine-grained visual perception tasks by synergizing planning, reasoning, and tool use. We evaluate VipAct on benchmarks featuring a diverse set of visual perception tasks, with experimental results demonstrating significant performance improvements over state-of-the-art baselines across all tasks. Furthermore, comprehensive ablation studies reveal the critical role of multi-agent collaboration in eliciting more detailed System-2 reasoning and highlight the importance of image input for task planning. Additionally, our error analysis identifies patterns of VLMs' inherent limitations in visual perception, providing insights into potential future improvements. VipAct offers a flexible and extensible framework, paving the way for more advanced visual perception systems across various real-world applications.

cs.CL↗

Decomposition-Enhanced Training for Post-Hoc Attributions In Language Models

Large language models (LLMs) are increasingly used for long-document question answering, where reliable attribution to sources is critical for trust. Existing post-hoc attribution methods work well for extractive QA but struggle in multi-hop, abstractive, and semi-extractive settings, where answers synthesize information across passages. To address these challenges, we argue that post-hoc attribution can be reframed as a reasoning problem, where answers are decomposed into constituent units, each tied to specific context. We first show that prompting models to generate such decompositions alongside attributions improves performance. Building on this, we introduce DecompTune, a post-training method that teaches models to produce answer decompositions as intermediate reasoning steps. We curate a diverse dataset of complex QA tasks, annotated with decompositions by a strong LLM, and post-train Qwen-2.5 (7B and 14B) using a two-stage SFT + GRPO pipeline with task-specific curated rewards. Across extensive experiments and ablations, DecompTune substantially improves attribution quality, outperforming prior methods and matching or exceeding state-of-the-art frontier models.

cs.CL↗