arXiv subjects

Ryan A. Loomis

Publications and source records attributed to Ryan A. Loomis.

At least 37 records · Page 2Linked to original sources

arXiv2025

exoALMA XV: Interpreting the height of CO emission layer

The availability of exquisite data and the development of new analysis techniques have enabled the study of emitting heights in proto-planetary disks. In this paper we introduce a simple model linking the emitting height of CO to the disk surface density and temperature structure. We then apply the model to measurements of the emitting height and disk temperature conducted as part of exoALMA, integrated with additional legacy measurements from the MAPS Large Programme, to derive CO column densities and surface density profiles (assuming a CO abundance) for a total of 14 disks. A unique feature of the method we introduce to measure surface densities is that it can be applied to optically thick observations, rather than optically thin as conventionally done. While we use our method on a sample of well studied disks where temperature structures have been derived using two emission lines, we show that reasonably accurate estimates can be obtained also when only one molecular transition is available. With our method we obtain independent constraints from $^{12}$CO and $^{13}$CO and we find they are in general good agreement using the standard $^{12}$C/$^{13}$C isotopic ratio. The masses derived from our method are systematically lower compared with the values derived dynamically from the rotation curve if using an ISM CO abundance, implying that CO is depleted by a median factor $\sim$20 with respect to the ISM value, in line with other works that find that CO is depleted in proto-planetary disks.

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arXiv2025

exoALMA V: Gaseous Emission Surfaces and Temperature Structures

Analysis of the gaseous component in protoplanetary disks can inform us about their thermal and physical structure, chemical composition, and kinematic properties, all of which are crucial for understanding various processes within the disks. By exploiting the asymmetry of the line emission, or via line profile analysis, we can locate the emitting surfaces. Here, we present the emission surfaces of the exoALMA sources in $^{12}$CO $J=3-2$, $^{13}$CO $J=3-2$, and CS $J=7-6$. We find that $^{12}$CO traces the upper disk atmosphere, with mean <$z/r$> values of $\approx$ 0.28, while $^{13}$CO and CS trace lower regions of the disk with mean values of $\approx$ 0.16 and $\approx$ 0.18, respectively. We find that $^{12}$CO <$z/r$> and the disk mass are positively correlated with each other; this relationship offers a straightforward way to infer the disk mass. We derive 2-D $r-z$ temperature distributions of the disks. Additionally, we search for substructure in the surfaces and radial intensity profiles; we find evidence of localized substructure in the emission surfaces and peak intensity profiles of nearly every disk, with this substructure often being co-incident between molecular tracers, intensity profiles, and kinematic perturbations. Four disks display evidence of potential photo-desorption, implying that this effect may be common even in low FUV star-forming regions. For most disks, we find that the physical and thermal structure is more complex than analytical models can account for, highlighting a need for more theoretical work and a better understanding of the role of projection effects on our observations.

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arXiv2025

exoALMA III: Line-intensity Modeling and System Property Extraction from Protoplanetary Disks

The ALMA large program exoALMA offers a unique window into the three-dimensional physical and dynamical properties of 15 circumstellar disks where planets may be actively forming. Here, we present an analysis methodology to map the gas disk structure and substructure encoded in 12CO, 13CO, and CS line emission from our targets. To model and characterize the disk structure probed by optically thin species, such as CS and, in some cases, 13CO, we introduce a composite line profile kernel that accounts for increased intensities caused by the projected overlap between the disk's front and back side emission. Our workflow, built on the Discminer modelling framework, incorporates an improved iterative two-component fitting method for inclined sources ($i>40^\circ$), to mitigate the impact of the disk backside on the extraction of velocity maps. Also, we report best-fit parameters for the Keplerian stellar masses, as well as inclinations, position angles, systemic velocities, rotation direction, and emission surfaces of the disks in our sample.

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arXiv2025

exoALMA IX: Regularized Maximum Likelihood Imaging of Non-Keplerian Features

The planet-hunting ALMA large program exoALMA observed 15 protoplanetary disks at ~0.15" angular resolution and ~100 m/s spectral resolution, characterizing disk structures and kinematics in enough detail to detect non-Keplerian features (NKFs) in the gas emission. As these features are often small and low-contrast, robust imaging procedures are critical for identifying and characterizing NKFs, including determining which features may be signatures of young planets. The exoALMA collaboration employed two different imaging procedures to ensure the consistent detection of NKFs: CLEAN, the standard iterative deconvolution algorithm, and regularized maximum likelihood (RML) imaging. This paper presents the exoALMA RML images, obtained by maximizing the likelihood of the visibility data given a model image and subject to regularizer penalties. Crucially, in the context of exoALMA, RML images serve as an independent verification of marginal features seen in the fiducial CLEAN images. However, best practices for synthesizing RML images of multi-channeled (i.e. velocity-resolved) data remain undefined, as prior work on RML imaging for protoplanetary disk data has primarily addressed single-image cases. We used the open source Python package MPoL to explore RML image validation methods for multi-channeled data and synthesize RML images from the exoALMA observations of 7 protoplanetary disks with apparent NKFs in the 12CO J=3-2 CLEAN images. We find that RML imaging methods independently reproduce the NKFs seen in the CLEAN images of these sources, suggesting that the NKFs are robust features rather than artifacts from a specific imaging procedure.

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arXiv2025

exoALMA I. Science Goals, Project Design and Data Products

Planet formation is a hugely dynamic process requiring the transport, concentration and assimilation of gas and dust to form the first planetesimals and cores. With access to extremely high spatial and spectral resolution observations at unprecedented sensitivities, it is now possible to probe the planet forming environment in detail. To this end, the exoALMA Large Program targeted fifteen large protoplanetary disks ranging between ${\sim}1\arcsec$ and ${\sim}7\arcsec$ in radius, and mapped the gas and dust distributions. $^{12}$CO J=3-2, $^{13}$CO J=3-2 and CS J=7-6 molecular emission was imaged at high angular (${\sim}~0\farcs15$) and spectral (${\sim}~100~{\rm m\,s^{-1}}$) resolution, achieving a surface brightness temperature sensitivity of ${\sim}1.5$~K over a single channel, while the 330~GHz continuum emission was imaged at 90~mas resolution and achieved a point source sensitivity of ${\sim}\,40~μ{\rm Jy~beam^{-1}}$. These observations constitute some of the deepest observations of protoplanetary disks to date. Extensive substructure was found in all but one disk, traced by both dust continuum and molecular line emission. In addition, the molecular emission allowed for the velocity structure of the disks to be mapped with excellent precision (uncertainties on the order of $10~{\rm m\,s^{-1}}$), revealing a variety of kinematic perturbations across all sources. From this sample it is clear that, when observed in detail, all disks appear to exhibit physical and dynamical substructure indicative of on-going dynamical processing due to young, embedded planets, large-scale, (magneto-)hydrodynamical instabilities or winds.

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arXiv2025

exoALMA. X. channel maps reveal complex $^{12}$CO abundance distributions and a variety of kinematic structures with evidence for embedded planets

We analyze the $^{12}$CO $J=3-2$ data cubes of the disks in the exoALMA program. 13/15 disks reveal a variety of kinematic substructures in individual channels: large-scale arcs or spiral arms, localized velocity kinks, and/or multiple faints arcs that appear like filamentary structures on the disk surface. We find kinematic signatures that are consistent with planet wakes in six disks: AA Tau, SY Cha, J1842, J1615, LkCa 15 and HD 143006. Comparison with hydrodynamical and radiative transfer simulations suggests planets with orbital radii between 80 and 310\,au and masses between 1 and 5 M$_\mathrm{Jup}$. Additional kinematic substructures limit our ability to place tight constraints on the planet masses. When the inclination is favorable to separate the upper and lower surfaces (near 45$^\mathrm{o}$, i.e. in 7/15 disks), we always detect the vertical CO snowline and find that the $^{12}$CO freeze-out is partial in the disk midplane, with a depletion factor of $\approx 10^{-3}$ - $10^{-2}$ compared to the warm molecular layer. In these same seven disks, we also systematically detect evidence of CO desorption in the outer regions.

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arXiv2025

exoALMA XII: Weighing and sizing exoALMA disks with rotation curve modelling

The exoALMA large program offers a unique opportunity to investigate the fundamental properties of protoplanetary disks, such as their masses and sizes, providing important insights in the mechanism responsible for the transport of angular momentum. In this work, we model the rotation curves of CO isotopologues $^{12}$CO and $^{13}$CO of ten sources within the exoALMA sample, and we constrain the stellar mass, the disk mass and the density scale radius through precise characterization of the pressure gradient and disk self gravity. We obtain dynamical disk masses for our sample measuring the self-gravitating contribution to the gravitational potential. We are able to parametrically describe their surface density, and all of them appear gravitationally stable. By combining dynamical disk masses with dust continuum emission data, we determine an averaged gas-to-dust ratio of approximately 400, not statistically consistent with the standard value of 100, assuming optically thin dust emission. In addition, the measurement of the dynamical scale radius allows for direct comparison with flux-based radii of gas and dust. This comparison suggests that substructures may influence the size of the dust disk, and that CO depletion might reconcile our measurements with thermochemical models. Finally, with the stellar mass, disk mass, scale radius, and accretion rate, and assuming self-similar evolution of the surface density, we constrain the effective $α_S$ for these systems. We find a broad range of $α_S$ values ranging between $10^{-5}$ and $10^{-2}$.

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arXiv2025

exoALMA IV: Substructures, Asymmetries, and the Faint Outer Disk in Continuum Emission

The exoALMA Large Program targeted a sample of 15 disks to study gas dynamics within these systems, and these observations simultaneously produced continuum data at 0.9 mm (331.6 GHz) with exceptional surface brightness sensitivity at high angular resolution. To provide a robust characterization of the observed substructures, we performed a visibility space analysis of the continuum emission from the exoALMA data, characterizing axisymmetric substructures and nonaxisymmetric residuals obtained by subtracting an axisymmetric model from the observed data. We defined a nonaxisymmetry index and found that the most asymmetric disks predominantly show an inner cavity and consistently present higher values of mass accretion rate and near-infrared excess. This suggests a connection between outer disk dust substructures and inner disk properties. The depth of the data allowed us to describe the azimuthally averaged continuum emission in the outer disk, revealing that larger disks (both in dust and gas) in our sample tend to be gradually tapered compared to the sharper outer edge of more compact sources. Additionally, the data quality revealed peculiar features in various sources, such as shadows, inner disk offsets, tentative external substructures, and a possible dust cavity wall.

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arXiv2025

Discovery of the 7-ring PAH Cyanocoronene (C$_{24}$H$_{11}$CN) in GOTHAM Observations of TMC-1

We present the synthesis and laboratory rotational spectroscopy of the 7-ring polycyclic aromatic hydrocarbon (PAH) cyanocoronene (C$_{24}$H$_{11}$CN) using a laser-ablation assisted cavity-enhanced Fourier transform microwave spectrometer. A total of 71 transitions were measured and assigned between 6.8--10.6\,GHz. Using these assignments, we searched for emission from cyanocoronene in the GBT Observations of TMC-1: Hunting Aromatic Molecules (GOTHAM) project observations of the cold dark molecular cloud TMC-1 using the 100\,m Green Bank Telescope (GBT). We detect a number of individually resolved transitions in ultrasensitive X-band observations and perform a Markov Chain Monte Carlo analysis to derive best-fit parameters, including a total column density of $N(\mathrm{C}_{24}\mathrm{H}_{11}\mathrm{CN}) = 2.69^{+0.26}_{-0.23} \times 10^{12}\,\mathrm{cm}^{-2}$ at a temperature of $6.05^{+0.38}_{-0.37}\,$K. A spectral stacking and matched filtering analysis provides a robust 17.3$\,σ$ significance to the overall detection. The derived column density is comparable to that of cyano-substituted naphthalene, acenaphthylene, and pyrene, defying the trend of decreasing abundance with increasing molecular size and complexity found for carbon chains. We discuss the implications of the detection for our understanding of interstellar PAH chemistry and highlight major open questions and next steps.

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arXiv2024

Discovery of interstellar 1-cyanopyrene: a four-ring polycyclic aromatic hydrocarbon in TMC-1

Polycyclic aromatic hydrocarbons (PAHs) are expected to be the most abundant class of organic molecules in space. Their interstellar lifecycle is not well understood, and progress is hampered by difficulties detecting individual PAH molecules. Here, we present the discovery of CN-functionalized pyrene, a 4-ring PAH, in the dense cloud TMC-1 using the 100-m Green Bank Telescope. We derive an abundance of 1-cyanopyrene of ~1.52 x $10^{12}$ cm$^{-2}$, and from this estimate that the un-substituted pyrene accounts for up to ~0.03-0.3% of the carbon budget in the dense interstellar medium which trace the birth sites of stars and planets. The presence of pyrene in this cold (~10 K) molecular cloud agrees with its recent measurement in asteroid Ryugu where isotopic clumping suggest a cold, interstellar origin. The direct link to the birth site of our solar system is strengthened when we consider the solid state pyrene content in the pre-stellar materials compared to comets, which represent the most pristine material in the solar system. We estimate that solid state pyrene can account for 1% of the carbon within comets carried by this one single organic molecule. The abundance indicates pyrene is an "island of stability" in interstellar PAH chemistry and suggests a potential cold molecular cloud origin of the carbon carried by PAHs that is supplied to forming planetary systems, including habitable worlds such as our own.

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arXiv2024

Detections of interstellar 2-cyanopyrene and 4-cyanopyrene in TMC-1

Polycyclic aromatic hydrocarbons (PAHs) are among the most ubiquitous compounds in the universe, accounting for up to ~25% of all interstellar carbon. Since most unsubstituted PAHs do not possess permanent dipole moments, they are invisible to radio astronomy. Constraining their abundances relies on the detection of polar chemical proxies, such as aromatic nitriles. We report the detection of 2- and 4-cyanopyrene, isomers of the recently detected 1-cyanopyrene. We find that these isomers are present in an abundance ratio of ~2:1:2, which mirrors the number of equivalent sites available for CN addition. We conclude that there is evidence that the cyanopyrene isomers formed by direct CN addition to pyrene under kinetic control in hydrogen-rich gas at 10 K and discuss constraints on the H/CN ratio for PAHs in TMC-1.

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arXiv2024

Maser Activity of Organic Molecules toward Sgr B2(N)

At centimeter wavelengths, single-dish observations have suggested that the Sagittarius (Sgr) B2 molecular cloud at the Galactic Center hosts weak maser emission from several organic molecules, including CH$_2$NH, HNCNH, and HCOOCH$_3$. However, the lack of spatial distribution information of these new maser species has prevented us from assessing the excitation conditions of the maser emission as well as their pumping mechanisms. Here, we present a mapping study toward Sgr B2 North (N) to locate the region where the complex maser emission originates. We report the first detection of the Class I methanol (CH$_3$OH) maser at 84 GHz and the first interferometric map of the methanimine (CH$_2$NH) maser at 5.29 GHz toward this region. In addition, we present a tool for modeling and fitting the unsaturated molecular maser signals with non-LTE radiative transfer models and Bayesian analysis using the Markov-Chain Monte Carlo approach. These enable us to quantitatively assess the observed spectral profiles. The results suggest a two-chain-clump model for explaining the intense CH$_3$OH Class I maser emission toward a region with low continuum background radiation. By comparing the spatial origin and extent of maser emission from several molecular species, we find that the 5.29 GHz CH$_2$NH maser has a close spatial relationship with the 84 GHz CH$_3$OH Class I masers. This relationship serves as observational evidence to suggest a similar collisional pumping mechanism for these maser transitions.

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arXiv2024

Rotational Spectrum and First Interstellar Detection of 2-Methoxyethanol Using ALMA Observations of NGC 6334I

We use both chirped-pulse Fourier transform and frequency modulated absorption spectroscopy to study the rotational spectrum of 2-methoxyethanol in several frequency regions ranging from 8.7-500 GHz. The resulting rotational parameters permitted a search for this molecule in Atacama Large Millimeter/submillimeter Array (ALMA) observations toward the massive protocluster NGC 6334I as well as source B of the low-mass protostellar system IRAS 16293-2422. 25 rotational transitions are observed in the ALMA Band 4 data toward NGC 6334I, resulting in the first interstellar detection of 2-methoxyethanol. A column density of $1.3_{-0.9}^{+1.4} \times 10^{17}$ cm$^{-2}$ is derived at an excitation temperature of $143_{-39}^{+31}$ K. However, molecular signal is not observed in the Band 7 data toward IRAS 16293-2422B and an upper limit column density of $2.5 \times 10^{15}$ cm$^{-2}$ is determined. Various possible formation pathways--including radical recombination and insertion reactions--are discussed. We also investigate physical differences between the two interstellar sources that could result in the observed abundance variations.

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arXiv2024

The First Spatially-resolved Detection of $^{13}$CN in a Protoplanetary Disk and Evidence for Complex Carbon Isotope Fractionation

Recent measurements of carbon isotope ratios in both protoplanetary disks and exoplanet atmospheres have suggested a possible transfer of significant carbon isotope fractionation from disks to planets. For a clearer understanding of the isotopic link between disks and planets, it is important to measure the carbon isotope ratios in various species. In this paper, we present a detection of the $^{13}$CN $N=2-1$ hyperfine lines in the TW Hya disk with the Atacama Large Millimeter/submillimeter Array. This is the first spatially-resolved detection of $^{13}$CN in disks, which enables us to measure the spatially resolved $^{12}$CN/$^{13}$CN ratio for the first time. We conducted non-local thermal equilibrium modeling of the $^{13}$CN lines in conjunction with previously observed $^{12}$CN lines to derive the kinetic temperature, ${\rm H_2}$ volume density, and column densities of $^{12}$CN and $^{13}$CN. The ${\rm H_2}$ volume density is found to range between $ (4 - 10)\times10^7 \ {\rm cm^{-3}}$, suggesting that CN molecules mainly reside in the disk upper layer. The $^{12}$CN/$^{13}$CN ratio is measured to be $ 70^{+9}_{-6}$ at $30 < r < 80$ au from the central star, which is similar to the $\rm ^{12}C/^{13}C$ ratio in the interstellar medium. However, this value differs from the previously reported values found for other carbon-bearing molecules (CO and HCN) in the TW Hya disk. This could be self-consistently explained by different emission layer heights for different molecules combined with preferential sequestration of $\rm ^{12}C$ into the solid phase towards the disk midplane. This study reveals the complexity of the carbon isotope fractionation operating in disks.

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arXiv2024

An Automated Chemical Exploration of NGC 6334I at 340 au Resolution

Much of the information gleaned from observations of star-forming regions comes from the analysis of their molecular emission spectra, particularly in the radio regime. The time-consuming nature of fitting synthetic spectra to observations interactively for such line-rich sources, however, often results in such analysis being limited to data extracted from a single-dish observation or a handful of pixels from an interferometric observation. Yet, star-forming regions display a wide variety of physical conditions that are difficult, if not impossible, to accurately characterize with such a limited number of spectra. We have developed an automated fitting routine that visits every pixel in the field of view of an ALMA data cube and determines the best-fit physical parameters, including excitation temperature and column densities, for a given list of molecules. In this proof-of-concept work, we provide an overview of the fitting routine and apply it to 0".26, 1.1 km s$^{-1}$ resolution ALMA observations of two sites of massive star-formation in NGC 6334I. Parameters were found for 21 distinct molecules by generating synthetic spectra across 7.48 GHz of spectral bandwidth between 280 and 351 GHz. Spatial images of the derived parameters for each of the > 8000 pixels are presented with special attention paid to the C$_2$H$_4$O$_2$ isomers and their relative variations. We highlight the greater scientific utility of the column density and velocity images of individual molecules compared to traditional moment maps of single transitions.

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arXiv2024

JWST-MIRI Spectroscopy of Warm Molecular Emission and Variability in the AS 209 Disk

We present MIRI MRS observations of the large, multi-gapped protoplanetary disk around the T-Tauri star AS 209. The observations reveal hundreds of water vapor lines from 4.9 to 25.5 $μ$m towards the inner $\sim1$ au in the disk, including the first detection of ro-vibrational water emission in this disk. The spectrum is dominated by hot ($\sim800$ K) water vapor and OH gas, with only marginal detections of CO$_2$, HCN, and a possible colder water vapor component. Using slab models with a detailed treatment of opacities and line overlap, we retrieve the column density, emitting area, and excitation temperature of water vapor and OH, and provide upper limits for the observable mass of other molecules. Compared to MIRI spectra of other T-Tauri disks, the inner disk of AS 209 does not appear to be atypically depleted in CO$_2$ nor HCN. Based on \textit{Spitzer IRS} observations, we further find evidence for molecular emission variability over a 10-year baseline. Water, OH, and CO$_2$ line luminosities have decreased by factors 2-4 in the new MIRI epoch, yet there are minimal continuum emission variations. The origin of this variability is yet to be understood.

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arXiv2023

MAPS: Constraining Serendipitous Time Variability in Protoplanetary Disk Molecular Ion Emission

Theoretical models and observations suggest that the abundances of molecular ions in protoplanetary disks should be highly sensitive to the variable ionization conditions set by the young central star. We present a search for temporal flux variability of HCO+ J=1-0, which was observed as a part of the Molecules with ALMA at Planet-forming Scales (MAPS) ALMA Large Program. We split out and imaged the line and continuum data for each individual day the five sources were observed (HD 163296, AS 209, GM Aur, MWC 480, and IM Lup, with between 3 to 6 unique visits per source). Significant enhancement (>3σ) was not observed, but we find variations in the spectral profiles in all five disks. Variations in AS 209, GM Aur, and HD 163296 are tentatively attributed to variations in HCO+ flux, while variations in IM Lup and MWC 480 are most likely introduced by differences in the \textit{uv} coverage, which impact the amount of recovered flux during imaging. The tentative detections and low degree of variability are consistent with expectations of X-ray flare driven HCO+ variability, which requires relatively large flares to enhance the HCO+ rotational emission at significant (>20%) levels. These findings also demonstrate the need for dedicated monitoring campaigns with high signal to noise ratios to fully characterize X-ray flare driven chemistry.

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arXiv2023

The ALMA Interferometric Pipeline Heuristics

We describe the calibration and imaging heuristics developed and deployed in the ALMA interferometric data processing pipeline, as of ALMA Cycle 9. The pipeline software framework is written in Python, with each data reduction stage layered on top of tasks and toolkit functions provided by the Common Astronomy Software Applications package. This framework supports a variety of tasks for observatory operations, including science data quality assurance, observing mode commissioning, and user reprocessing. It supports ALMA and VLA interferometric data along with ALMA and NRO45m single dish data, via different stages and heuristics. In addition to producing calibration tables, calibrated measurement sets, and cleaned images, the pipeline creates a WebLog which serves as the primary interface for verifying the data quality assurance by the observatory and for examining the contents of the data by the user. Following the adoption of the pipeline by ALMA Operations in 2014, the heuristics have been refined through annual development cycles, culminating in a new pipeline release aligned with the start of each ALMA Cycle of observations. Initial development focused on basic calibration and flagging heuristics (Cycles 2-3), followed by imaging heuristics (Cycles 4-5), refinement of the flagging and imaging heuristics with parallel processing (Cycles 6-7), addition of the moment difference analysis to improve continuum channel identification (2020 release), addition of a spectral renormalization stage (Cycle 8), and improvement in low SNR calibration heuristics (Cycle 9). In the two most recent Cycles, 97% of ALMA datasets were calibrated and imaged with the pipeline, ensuring long-term automated reproducibility. We conclude with a brief description of plans for future additions, including self-calibration, multi-configuration imaging, and calibration and imaging of full polarization data.

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