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Servet Martínez

Publications and source records attributed to Servet Martínez.

18 recordsLinked to original sources

Threatening excursions in large population quasi-stationary birth and death systems. On a question of Antonio Galves

We consider time continuous multispecies birth and death processes in a regime of large populations. The jump rates depend on a large scaling parameter K modeling the charge capacity. When K tends to infinity, the process is close (in finite time) to a dynamical system containing a non zero global attracting equilibrium and zero as unstable equilibrium. For each fixed K, extinction in finite time occurs almost surely and a quasi-stationary distribution occurs naturally in the study of the statistics over times scales which are large but smaller than the extinction time scale. Before this catastrophic event the process makes many unsuccessful large deviations attempts with time scales corresponding to how far it deviates from the quasi-equilibrium. The paper concerns the statistical description of these typical trajectories starting from the quasi-stationary distribution until extinction. An unusual mixing property yields large time scale behavior for the process starting from a fixed state. We give a precise statistical description of the successive exit times of the process rescaled by K from a neighborhood of the equilibrium of the dynamical system in a clumping time scale and prove their asymptotic Poisson distribution. We also give a precise description of the asymptotic distribution of the successive records until extinction.

math.PR↗

Maxentropy completion and properties of some partially defined Stationary Markov chains

We consider a stationary Markovian evolution with values on a disjointly partitioned set space $I\sqcup {\cal E}$. The evolution is visible (in the sense of knowing the transition probabilities) on the states in $I$ but not for the states in ${\cal E}$. One only knows some partial information on the transition probabilities on ${\cal E}$, the input and output transition probabilities and some constraints of the transition probabilities on ${\cal E}$. Under some conditions we supply the transition probabilities on ${\cal E}$ that satisfies the maximum entropy principle.

math.PR↗

Tessellation-valued processes that are generated by cell division

Processes of random tessellations of the Euclidean space $\mathbb{R}^d$, $d\geq 1$, are considered which are generated by subsequent division of their cells. Such processes are characterized by the laws of the life times of the cells until their division and by the laws for the random hyperplanes that divide the cells at the end of their life times. The STIT tessellation processes are a reference model. In the present paper a generalization concerning the life time distributions is introduced, a sufficient condition for the existence of such cell division tessellation processes is provided and a construction is described. In particular, for the case that the random dividing hyperplanes have a Mondrian distribution -- which means that all cells of the tessellations are cuboids -- it is shown that the intrinsic volumes, except the Euler characteristic, can be used as the parameter for the exponential life time distribution of the cells.

math.PR↗

One step entropy variation in sequential sampling of species for the Poisson-Dirichlet Process

We consider the sequential sampling of species, where observed samples are classified into the species they belong to. We are particularly interested in studying some quantities describing the sampling process when there is a new species discovery. We assume that the observations and species are organized as a two-parameter Poisson-Dirichlet Process, which is commonly used as a Bayesian prior in the context of entropy estimation, and we use the computation of the mean posterior entropy given a sample developed in [4]. Our main result shows the existence of a monotone functional, constructed from the difference between the maximal entropy and the mean entropy throughout the sampling process. We show that this functional remains constant only when a new species discovery occurs.

math.PR↗

A simple finite delayed multi-type branching process for infectious disease modeling

We study a model for the spread of an infectious disease which incorporates spatial and temporal effects. The model is a delayed multi-type branching process in which types represent geographic regions while infected individuals reproduce offspring during a finite time interval and have convalescence times and random death/recovery outcomes. We give simple expressions for the limit of the geometrically weighted mean evolution of the process.

math.PR↗

Reproduction matrix for an epidemic and lockdowns in a city

We consider an epidemic spreading in a city which is divided geographically into different districts. We introduce the reproduction matrix $\R=\bigl(R(i,j)\bigr)$ between districts, where $R(i,j)$ is the mean number of individuals in district $j$ infected by an individual from district $i$. We analyse policies of partial lockdowns of the city, that is of a set of districts, based on the study of matrix $\R$, where rows and columns corresponding to districts in lockdown are set to zero. This schema can also be applied to a country divided into regions or other appropriate units, provided the relevant information is available. We conclude by analyzing a matrix~$\R$ which was constructed for the spread of COVID-19 in Santiago, Chile, with the aid of an agent-based simulator for generating surrogate district data.

physics.soc-ph↗

A probabilistic analysis of a continuous-time evolution in recombination

We study the continuous-time evolution of the recombination equation of population genetics. This evolution is given by a differential equation that acts on a product probability space, and its solution can be described by a Markov chain on a set of partitions that converges to the finest partition. We study an explicit form of the law of this process by using a family of trees. We also describe the geometric decay rate to the finest partition and the quasi-stationary behavior of the Markov chain when conditioned on the event that the chain does not hit the limit.

math.PR↗

Powers of Brownian Green Potentials

In this article we study stability properties of $g_O$, the standard Green kernel for $O$ an open regular set in $R^d$. In $d\ge 3$ we show that $g_O^β$ is again a Green kernel of a Markov Feller process, for any power $β\in [1,d/(d-2))$. In dimension $d=2$, if $O$ is an open Greenian regular set, we show the same result for $g_O^β$, for any $β\ge 1$ and for the kernel $\exp(αg_O)$, when $α\in (0,2π)$.

math.PR↗

Entropy of absorbed Markov chains

We consider a strictly substochastic matrix or an stochastic matrix with absorbing states. By using quasi-stationary distributions one shows there is a canonical associated stationary Markov chain. Based upon $2-$stringing representation of the resurrected chain we supply a stationary representation of the killed and the absorbed chains. The entropies of these representations has a clear meaning when one identifies the probability measure of natural factors. The balance between the entropies of these representations and the canonical chain, serves to check the suitability of the whole construction.

math.PR↗

Regenerative processes for Poisson zero polytopes

Let $(M_t: t > 0)$ be a Markov process of tessellations of ${\mathbb R}^\ell$ and $({\cal C}_t:\, t > 0)$ the process of their zero cells (zero polytopes) which has the same distribution as the corresponding process for Poisson hyperplane tessellations. Let $a>1$. Here we describe the stationary zero cell process $(a^t {\cal C}_{a^t}:\, t\in {\mathbb R})$ in terms of some regenerative structure and we prove that it is a Bernoulli flow. An important application are the STIT tessellation processes.

math.PR↗

STIT Tessellations -- Ergodic Limit Theorems and Bounds for the Speed of Convergence

We consider homogeneous STIT tessellations in the $\ell$-dimensional Euclidean space ${\mathbb R}^\ell$. Based on results for the spatial $β$-mixing coefficient an upper bound for the variance of additive functionals of tessellations is derived, using results by Yoshihara and Heinrich. Moreover, ergodic theorems are applied to subadditive functionals.

math.PR↗

An Entropy-Based Technique for Classifying Bacterial Chromosomes According to Synonymous Codon Usage

We present a framework based on conditional entropy and the Dirichlet distribution for classifying chromosomes based on the degree to which they use synonymous codons uniformly or preferentially, that is, whether or not codons that code for an amino acid appear with the same relative frequency. Applying the approach to a large collection of annotated bacterial chromosomes reveals three distinct groups of bacteria.

q-bio.GN↗

STIT Process and Trees

We study several constructions of the STIT tessellation process in a window of $\RR^\ell$ and supply an exact formula for its transition probability.

math.PR↗

Markovianness and Conditional Independence in Annotated Bacterial DNA

We explore the probabilistic structure of DNA in a number of bacterial genomes and conclude that a form of Markovianness is present at the boundaries between coding and non-coding regions, that is, the sequence of START and STOP codons annotated for the bacterial genome. This sequence is shown to satisfy a conditional independence property which allows its governing Markov chain to be uniquely identified from the abundances of START and STOP codons. Furthermore, the annotated sequence is shown to comply with Chargaff's second parity rule at the codon level.

q-bio.QM↗

STIT Tessellations have trivial tail σ-algebra

We consider homogeneous STIT tessellations Y in the \ell-dimensional Euclidean space and show the triviality of the tail σ-algebra. This is a sharpening of the mixing result by Lachièze-Rey.

math.PR↗

A Gibbs approach to Chargaff's second parity rule

Chargaff's second parity rule (CSPR) asserts that the frequencies of short polynucleotide chains are the same as those of the complementary reversed chains. Up to now, this hypothesis has only been observed empirically and there is currently no explanation for its presence in DNA strands. Here we argue that CSPR is a probabilistic consequence of the reverse complementarity between paired strands, because the Gibbs distribution associated with the chemical energy between the bonds satisfies CSPR. We develop a statistical test to study the validity of CSPR under the Gibbsian assumption and we apply it to a large set of bacterial genomes taken from the GenBank repository.

math.PR↗

Ergodic Description of STIT Tessellations

Let (Y_t: t > 0) be the STIT tessellation process. We show that for all polytopes W with nonempty interior and all a>1, the renormalized random sequence (a^n Y_{a^n}: n integer) induced in W, is a finitary factor of a Bernoulli shift. As a corollary we get that the renormalized continuous time process (a^t Y_{a^t}: t real) induced in W is a Bernoulli flow.

math.PR↗