arXiv subjects

Shuo Zhang

Publications and source records attributed to Shuo Zhang.

At least 109 records · Page 6Linked to original sources

arXiv2025

SeqProFT: Sequence-only Protein Property Prediction with LoRA Finetuning

Protein language models (PLMs) have demonstrated remarkable capabilities in learning relationships between protein sequences and functions. However, finetuning these large models requires substantial computational resources, often with suboptimal task-specific results. This study investigates how parameter-efficient finetuning via LoRA can enhance protein property prediction while significantly reducing computational demands. By applying LoRA to ESM-2 and ESM-C models of varying sizes and evaluating 10 diverse protein property prediction tasks, we demonstrate that smaller models with LoRA adaptation can match or exceed the performance of larger models without adaptation. Additionally, we integrate contact map information through a multi-head attention mechanism, improving model comprehension of structural features. Our systematic analysis reveals that LoRA finetuning enables faster convergence, better performance, and more efficient resource utilization, providing practical guidance for protein research applications in resource-constrained environments. The code is available at https://github.com/jiankliu/SeqProFT.

cs.LG↗

arXiv2025

Nex-N1: Agentic Models Trained via a Unified Ecosystem for Large-Scale Environment Construction

The evolution of Large Language Models (LLMs) from passive responders to autonomous agents necessitates a fundamental shift in learning paradigms -- from static imitation to incentive-driven decision making. However, this transition is significantly impeded by the lack of scalable infrastructure capable of constructing high-quality interaction signals for effective policy learning. To address this, we introduce a comprehensive method designed to systematically scale the diversity and complexity of interactive environments. Our method realizes this scaling by addressing three orthogonal dimensions: (1) Complexity: NexAU, a flexible agent framework that supports building complex agent hierarchies via simple configurations; (2) Diversity: NexA4A automatically generates diverse agent hierarchies from natural language to cover infinite domains; and (3) Fidelity: NexGAP bridges the simulation-reality gap by integrating dynamic real-world environment for grounded trajectories synthesis. We train Nex-N1 upon the diverse and complex interactive environments established by our infrastructure. Empirical results on benchmarks such as SWE-bench and tau2 demonstrate that Nex-N1 consistently outperforms SOTA open-source models and achieves competitive performance against frontier proprietary models on complex agentic tasks. We open-source the Nex ecosystem and model weights to facilitate further research.

cs.CL↗

arXiv2025

RobustVLA: Robustness-Aware Reinforcement Post-Training for Vision-Language-Action Models

Vision-Language-Action (VLA) models have recently emerged as powerful general-purpose policies for robotic manipulation, benefiting from large-scale multi-modal pre-training. However, they often fail to generalize reliably in out-of-distribution deployments, where unavoidable disturbances such as observation noise, sensor errors, or actuation perturbations become prevalent. While recent Reinforcement Learning (RL)-based post-training provides a practical means to adapt pre-trained VLA models, existing methods mainly emphasize reward maximization and overlook robustness to environmental uncertainty. In this work, we introduce RobustVLA, a lightweight online RL post-training method designed to explicitly enhance the resilience of VLA models. Through a systematic robustness analysis, we identify two key regularizations: Jacobian regularization, which mitigates sensitivity to observation noise, and smoothness regularization, which stabilizes policies under action perturbations. Extensive experiments across diverse robotic environments demonstrate that RobustVLA significantly outperforms prior state-of-the-art methods in robustness and reliability. Our results highlight the importance of principled robustness-aware RL post-training as a key step toward improving the reliability and robustness of VLA models.

cs.RO↗

arXiv2025

Measuring the Impact of Lexical Training Data Coverage on Hallucination Detection in Large Language Models

Hallucination in large language models (LLMs) is a fundamental challenge, particularly in open-domain question answering. Prior work attempts to detect hallucination with model-internal signals such as token-level entropy or generation consistency, while the connection between pretraining data exposure and hallucination is underexplored. Existing studies show that LLMs underperform on long-tail knowledge, i.e., the accuracy of the generated answer drops for the ground-truth entities that are rare in pretraining. However, examining whether data coverage itself can serve as a detection signal is overlooked. We propose a complementary question: Does lexical training-data coverage of the question and/or generated answer provide additional signal for hallucination detection? To investigate this, we construct scalable suffix arrays over RedPajama's 1.3-trillion-token pretraining corpus to retrieve $n$-gram statistics for both prompts and model generations. We evaluate their effectiveness for hallucination detection across three QA benchmarks. Our observations show that while occurrence-based features are weak predictors when used alone, they yield modest gains when combined with log-probabilities, particularly on datasets with higher intrinsic model uncertainty. These findings suggest that lexical coverage features provide a complementary signal for hallucination detection. All code and suffix-array infrastructure are provided at https://github.com/WWWonderer/ostd.

cs.CL↗

arXiv2025

The Empowerment of Science of Science by Large Language Models: New Tools and Methods

Large language models (LLMs) have exhibited exceptional capabilities in natural language understanding and generation, image recognition, and multimodal tasks, charting a course towards AGI and emerging as a central issue in the global technological race. This manuscript conducts a comprehensive review of the core technologies that support LLMs from a user standpoint, including prompt engineering, knowledge-enhanced retrieval augmented generation, fine tuning, pretraining, and tool learning. Additionally, it traces the historical development of Science of Science (SciSci) and presents a forward looking perspective on the potential applications of LLMs within the scientometric domain. Furthermore, it discusses the prospect of an AI agent based model for scientific evaluation, and presents new research fronts detection and knowledge graph building methods with LLMs.

cs.CL↗

arXiv2025

Synergizing Multigrid Algorithms with Vision Transformer: A Novel Approach to Enhance the Seismic Foundation Model

Due to the emergency and homogenization of Artificial Intelligence (AI) technology development, transformer-based foundation models have revolutionized scientific applications, such as drug discovery, materials research, and astronomy. However, seismic data presents unique characteristics that require specialized processing techniques for pretraining foundation models in seismic contexts with high- and low-frequency features playing crucial roles. Existing vision transformers (ViTs) with sequential tokenization ignore the intrinsic pattern and fail to grasp both the high- and low-frequency seismic information efficiently and effectively. This work introduces a novel adaptive two-grid foundation model training strategy (ADATG) with Hilbert encoding specifically tailored for seismogram data, leveraging the hierarchical structures inherent in seismic data. Specifically, our approach employs spectrum decomposition to separate high- and low-frequency components and utilizes hierarchical Hilbert encoding to represent the data effectively. Moreover, observing the frequency principle observed in ViTs, we propose an adaptive training strategy that initially emphasizes coarse-level information and then progressively refines the model's focus on fine-level features. Our extensive experiments demonstrate the effectiveness and efficiency of our training methods. This research highlights the importance of data encoding and training strategies informed by the distinct characteristics of high- and low-frequency features in seismic images, ultimately contributing to the enhancement of visual seismic foundation models pretraining.

cs.CV↗

arXiv2025

Advancing IoT System Dependability: A Deep Dive into Management and Operation Plane Separation

We propose to enhance the dependability of large-scale IoT systems by separating the management and operation plane. We innovate the management plane to enforce overarching policies, such as safety norms, operation standards, and energy restrictions, and integrate multi-faceted management entities, including regulatory agencies and manufacturers, while the current IoT operational workflow remains unchanged. Central to the management plane is a meticulously designed, identity-independent policy framework that employs flexible descriptors rather than fixed identifiers, allowing for proactive deployment of overarching policies with adaptability to system changes. Our evaluation across three datasets indicates that the proposed framework can achieve near-optimal expressiveness and dependable policy enforcement.

cs.NI↗

arXiv2025

A Theoretical Analysis of Detecting Large Model-Generated Time Series

Motivated by the increasing risks of data misuse and fabrication, we investigate the problem of identifying synthetic time series generated by Time-Series Large Models (TSLMs) in this work. While there are extensive researches on detecting model generated text, we find that these existing methods are not applicable to time series data due to the fundamental modality difference, as time series usually have lower information density and smoother probability distributions than text data, which limit the discriminative power of token-based detectors. To address this issue, we examine the subtle distributional differences between real and model-generated time series and propose the contraction hypothesis, which states that model-generated time series, unlike real ones, exhibit progressively decreasing uncertainty under recursive forecasting. We formally prove this hypothesis under theoretical assumptions on model behavior and time series structure. Model-generated time series exhibit progressively concentrated distributions under recursive forecasting, leading to uncertainty contraction. We provide empirical validation of the hypothesis across diverse datasets. Building on this insight, we introduce the Uncertainty Contraction Estimator (UCE), a white-box detector that aggregates uncertainty metrics over successive prefixes to identify TSLM-generated time series. Extensive experiments on 32 datasets show that UCE consistently outperforms state-of-the-art baselines, offering a reliable and generalizable solution for detecting model-generated time series.

cs.AI↗

arXiv2025

Every Activation Boosted: Scaling General Reasoner to 1 Trillion Open Language Foundation

We introduce Ling 2.0, a series reasoning-oriented language foundation built upon the principle that every activation boosts reasoning capability. Designed to scale from tens of billions to one trillion parameters under a unified Mixture-of-Experts (MoE) paradigm, Ling 2.0 emphasizes high sparsity, cross-scale consistency, and efficiency guided by empirical scaling laws. The series includes three non-thinking (instruct) models - Ling-mini-2.0, Ling-flash-2.0, and Ling-1T - ranging from 16B to 1T total parameters and achieving up to 7-fold active-compute efficiency compared with dense counterparts. Ling 2.0 integrates coordinated innovations across model architecture, pre-training, post-training, and infrastructure: a high-sparsity MoE with MTP for efficient reasoning, reasoning-oriented data and mid-training CoT activation, reinforcement-based fine-tuning (DFT, Evo-CoT), and full-scale FP8 training with fine-grained heterogeneous pipelines. At the trillion scale, Ling-1T establishes a new Pareto frontier of reasoning accuracy versus computational efficiency, demonstrating that sparse activation, when properly aligned with reasoning objectives, enables scalable and efficient intelligence. Collectively, Ling 2.0 provides a coherent, open, and efficient foundation for advancing future reasoning and thinking models, including the Ring series built upon the same base.

cs.CL↗

arXiv2025

High-Precision Physics Experiments at Huizhou Large-Scale Scientific Facilities

In response to the capabilities presented by the High-Intensity Heavy Ion Accelerator Facility (HIAF) and the Accelerator-Driven Subcritical System (CiADS), as well as the proposed Chinese Advanced Nuclear Physics Research Facility (CNUF), we are assembling a consortium of experts in relevant discipline--both domestically and internationally--to delineate high-precision physics experiments that leverage the state-of-the-art research environment afforded by CNUF. Our focus encompasses six primary domains of inquiry: hadron physics--including endeavors such as the super eta factory and investigations into light hadron structures; muon physics; neutrino physics; neutron physics; the testing of fundamental symmetries; and the exploration of quantum effects within nuclear physics, along with the utilization of vortex accelerators. We aim to foster a well-rounded portfolio of large, medium, and small-scale projects, thus unlocking new scientific avenues and optimizing the potential of the Huizhou large scientific facility. The aspiration for international leadership in scientific research will be a guiding principle in our strategic planning. This initiative will serve as a foundational reference for the Institute of Modern Physics in its strategic planning and goal-setting, ensuring alignment with its developmental objectives while striving to secure a competitive edge in technological advancement. Our ambition is to engage in substantive research within these realms of high-precision physics, to pursue groundbreaking discoveries, and to stimulate progress in China's nuclear physics landscape, positioning Huizhou as a preeminent global hub for advanced nuclear physics research.

hep-ph↗

arXiv2025

BAPO: Stabilizing Off-Policy Reinforcement Learning for LLMs via Balanced Policy Optimization with Adaptive Clipping

Reinforcement learning (RL) has recently become the core paradigm for aligning and strengthening large language models (LLMs). Yet, applying RL in off-policy settings--where stale data from past policies are used for training--improves sample efficiency, but remains challenging: policy entropy declines sharply, optimization often becomes unstable and may even collapse. Through theoretical and empirical analysis, we identify two key insights: (i) an imbalance in optimization, where negative-advantage samples dominate the policy gradient, suppressing useful behaviors and risking gradient explosions; and (ii) the derived Entropy-Clip Rule, which reveals that the fixed clipping mechanism in PPO-like objectives systematically blocks entropy-increasing updates, thereby driving the policy toward over-exploitation at the expense of exploration. Building on these insights, we propose BAlanced Policy Optimization with Adaptive Clipping (BAPO), a simple yet effective method that dynamically adjusts clipping bounds to adaptively re-balance positive and negative contributions, preserve entropy, and stabilize RL optimization. Across diverse off-policy scenarios--including sample replay and partial rollout--BAPO achieves fast, stable, and data-efficient training. On AIME 2024 and AIME 2025 benchmarks, our 7B BAPO model surpasses open-source counterparts such as SkyWork-OR1-7B, while our 32B BAPO model not only achieves state-of-the-art results among models of the same scale but also outperforms leading proprietary systems like o3-mini and Gemini-2.5-Flash-Thinking.

cs.LG↗

arXiv2025

Nonconforming finite element spaces for $HΛ^k$ in $\mathbb{R}^n$

This paper constructs a unified family of nonconforming finite element spaces for $HΛ^k$ in $\mathbb{R}^n$ ($0\leqslant k\leqslant n$, $n\geqslant 1$). The spaces employ piecewise Whitney forms as shape functions, and include the lowest-degree Crouzeix-Raviart element space for $HΛ^0$. Optimal approximations and uniform discrete Poincaré inequalities are presented. Based on the newly constructed finite element spaces, discrete de Rham complexes with commutative diagrams, and the discrete Helmholtz decomposition and Hodge decomposition for piecewise constant spaces are established. All discrete operators involved are local, acting cell-wise. A framework of nonconforming finite element exterior calculus is then established, and is naturally connected to the classical conforming one. The cooperation of conforming and nonconforming finite element spaces leads to new discretization schemes of the Hodge Laplace problem. The new finite element spaces are constructed by a novel approach that seeks to mimic the dual connections between adjoint operators; novel construction methods and basic estimations are presented. Although the new spaces do not fit Ciarlet's finite element definition, they admit locally supported basis functions each spanning at most two adjacent cells, which makes the computation of the local stiffness matrices and the assembling of the global stiffness matrix implementable by following the standard procedure. Some numerical experiments are given to show the implementability and the performance of the new kind of spaces.

math.NA↗

arXiv2025

Qwen3Guard Technical Report

As large language models (LLMs) become more capable and widely used, ensuring the safety of their outputs is increasingly critical. Existing guardrail models, though useful in static evaluation settings, face two major limitations in real-world applications: (1) they typically output only binary "safe/unsafe" labels, which can be interpreted inconsistently across diverse safety policies, rendering them incapable of accommodating varying safety tolerances across domains; and (2) they require complete model outputs before performing safety checks, making them fundamentally incompatible with streaming LLM inference, thereby preventing timely intervention during generation and increasing exposure to harmful partial outputs. To address these challenges, we present Qwen3Guard, a series of multilingual safety guardrail models with two specialized variants: Generative Qwen3Guard, which casts safety classification as an instruction-following task to enable fine-grained tri-class judgments (safe, controversial, unsafe); and Stream Qwen3Guard, which introduces a token-level classification head for real-time safety monitoring during incremental text generation. Both variants are available in three sizes (0.6B, 4B, and 8B parameters) and support up to 119 languages and dialects, providing comprehensive, scalable, and low-latency safety moderation for global LLM deployments. Evaluated across English, Chinese, and multilingual benchmarks, Qwen3Guard achieves state-of-the-art performance in both prompt and response safety classification. All models are released under the Apache 2.0 license for public use.

cs.CL↗

arXiv2025

Precision measurement and modelling of the threshold-free 210Pb β spectrum

Beta decay is a fundamental process that governs nuclear stability and serves as a sensitive probe of the weak interaction and possible physics beyond the Standard Model of particle physics. However, precise measurements of complete $β$ decay spectra, particularly at low energies, remain experimentally and theoretically challenging. Here we report a high-precision, threshold-free measurement of the full $β$ decay spectrum of 210Pb to excited states of 210Bi, using a transition-edge sensor (TES)-based micro-calorimeter. This approach enables the detection of $β$ particle energies from 0 keV up to their endpoint by coincidence summing with subsequent de-excitation energy, thereby eliminating reconstruction artifacts near zero energy that have traditionally limited low-energy spectral accuracy. To our knowledge, this is the first complete, high-precision $β$ decay spectrum from 0 keV. The data resolve theoretical uncertainties associated with the atomic quantum exchange (AQE) effect. An accompanying ab initio theoretical framework, incorporating atomic, leptonic, and nuclear components, predicts a statistically significant (7.2 {$σ$}) enhancement in $β$ emission probability near zero energy, in agreement with the measurement and in contrast to models that omit AQE corrections. These results provide a new benchmark for $β$ decay theory at low energies, deepen our understanding of the weak interaction, and establish a critical foundation for searches for new physics, including dark matter interactions and precision studies of neutrinos.

nucl-ex↗

arXiv2025

REMA: A Unified Reasoning Manifold Framework for Interpreting Large Language Model

Understanding how Large Language Models (LLMs) perform complex reasoning and their failure mechanisms is a challenge in interpretability research. To provide a measurable geometric analysis perspective, we define the concept of the Reasoning Manifold, a latent low-dimensional geometric structure formed by the internal representations corresponding to all correctly reasoned generations. This structure can be conceptualized as the embodiment of the effective thinking paths that the model has learned to successfully solve a given task. Based on this concept, we build REMA, a framework that explains the origins of failures by quantitatively comparing the spatial relationships of internal model representations corresponding to both erroneous and correct reasoning samples. Specifically, REMA first quantifies the geometric deviation of each erroneous representation by calculating its k-nearest neighbors distance to the approximated manifold formed by correct representations, thereby providing a unified failure signal. It then localizes the divergence points where these deviations first become significant by tracking this deviation metric across the model's layers and comparing it against a baseline of internal fluctuations from correct representations, thus identifying where the reasoning chain begins to go off-track. Our extensive experiments on diverse language and multimodal models and tasks demonstrate the low-dimensional nature of the reasoning manifold and the high separability between erroneous and correct reasoning representations. The results also validate the effectiveness of the REMA framework in analyzing the origins of reasoning failures. This research connects abstract reasoning failures to measurable geometric deviations in representations, providing new avenues for in-depth understanding and diagnosis of the internal computational processes of black-box models.

cs.AI↗

arXiv2025

Real-Time System for Audio-Visual Target Speech Enhancement

We present a live demonstration for RAVEN, a real-time audio-visual speech enhancement system designed to run entirely on a CPU. In single-channel, audio-only settings, speech enhancement is traditionally approached as the task of extracting clean speech from environmental noise. More recent work has explored the use of visual cues, such as lip movements, to improve robustness, particularly in the presence of interfering speakers. However, to our knowledge, no prior work has demonstrated an interactive system for real-time audio-visual speech enhancement operating on CPU hardware. RAVEN fills this gap by using pretrained visual embeddings from an audio-visual speech recognition model to encode lip movement information. The system generalizes across environmental noise, interfering speakers, transient sounds, and even singing voices. In this demonstration, attendees will be able to experience live audio-visual target speech enhancement using a microphone and webcam setup, with clean speech playback through headphones.

eess.AS↗

arXiv2025

Enhancing RAG Efficiency with Adaptive Context Compression

Retrieval-augmented generation (RAG) enhances large language models (LLMs) with external knowledge but incurs significant inference costs due to lengthy retrieved contexts. While context compression mitigates this issue, existing methods apply fixed compression rates, over-compressing simple queries or under-compressing complex ones. We propose Adaptive Context Compression for RAG (ACC-RAG), a framework that dynamically adjusts compression rates based on input complexity, optimizing inference efficiency without sacrificing accuracy. ACC-RAG combines a hierarchical compressor (for multi-granular embeddings) with a context selector to retain minimal sufficient information, akin to human skimming. Evaluated on Wikipedia and five QA datasets, ACC-RAG outperforms fixed-rate methods and matches/unlocks over 4 times faster inference versus standard RAG while maintaining or improving accuracy.

cs.CL↗

arXiv2025

GitTaskBench: A Benchmark for Code Agents Solving Real-World Tasks Through Code Repository Leveraging

Beyond scratch coding, exploiting large-scale code repositories (e.g., GitHub) for practical tasks is vital in real-world software development, yet current benchmarks rarely evaluate code agents in such authentic, workflow-driven scenarios. To bridge this gap, we introduce GitTaskBench, a benchmark designed to systematically assess this capability via 54 realistic tasks across 7 modalities and 7 domains. Each task pairs a relevant repository with an automated, human-curated evaluation harness specifying practical success criteria. Beyond measuring execution and task success, we also propose the alpha-value metric to quantify the economic benefit of agent performance, which integrates task success rates, token cost, and average developer salaries. Experiments across three state-of-the-art agent frameworks with multiple advanced LLMs show that leveraging code repositories for complex task solving remains challenging: even the best-performing system, OpenHands+Claude 3.7, solves only 48.15% of tasks (recent progress has pushed the frontier further, with RepoMaster+Claude 3.5 achieving a new record of 62.96%). Error analysis attributes over half of failures to seemingly mundane yet critical steps like environment setup and dependency resolution, highlighting the need for more robust workflow management and increased timeout preparedness. By releasing GitTaskBench, we aim to drive progress and attention toward repository-aware code reasoning, execution, and deployment -- moving agents closer to solving complex, end-to-end real-world tasks. The benchmark and code are open-sourced at https://github.com/QuantaAlpha/GitTaskBench.

cs.SE↗