arXiv subjects

Simon Hubmer

Publications and source records attributed to Simon Hubmer.

36 records · Page 2Linked to original sources

arXiv2023

A Frame Decomposition of the Funk-Radon Transform

The Funk-Radon transform assigns to a function defined on the unit sphere its integrals along all great circles of the sphere. In this paper, we consider a frame decomposition of the Funk-Radon transform, which is a flexible alternative to the singular value decomposition. In particular, we construct a novel frame decomposition based on trigonometric polynomials and show its application for the inversion of the Funk-Radon transform. Our theoretical findings are verified by numerical experiments, which also incorporate a regularization scheme.

math.NA↗

arXiv2022

Localization of fixed dipoles at high precision by accounting for sample drift during illumination

Single molecule localization microscopy relies on the precise quantification of the position of single dye emitters in a sample. This precision is improved by the number of photons that can be detected from each molecule. It is therefore recommendable to increase illumination times for the recording process. Particularly recording at cryogenic temperatures dramatically reduces photobleaching and thereby allows a massive increase in illumination times to several seconds. As a downside, microscope instabilities may well introduce jitter during such long illuminations, deteriorating the localization precision. In this paper, we theoretically demonstrate that a parallel recording of fiducial marker beads together with a novel fitting approach accounting for the full drift trajectory allows for largely eliminating drift effects for drift magnitudes of several hundred nanometers per frame.

physics.optics↗

arXiv2022

On Regularization via Frame Decompositions with Applications in Tomography

In this paper, we consider linear ill-posed problems in Hilbert spaces and their regularization via frame decompositions, which are generalizations of the singular-value decomposition. In particular, we prove convergence for a general class of continuous regularization methods and derive convergence rates under both a-priori and a-posteriori parameter choice rules. Furthermore, we apply our derived results to a standard tomography problem based on the Radon transform.

math.NA↗

arXiv2022

A projected Nesterov-Kaczmarz approach to stellar population-kinematic distribution reconstruction in Extragalactic Archaeology

In this paper, we consider the problem of reconstructing a galaxy's stellar population-kinematic distribution function from optical integral field unit measurements. These quantities are connected via a high-dimensional integral equation. To solve this problem, we propose a projected Nesterov-Kaczmarz reconstruction (PNKR) method, which efficiently leverages the problem structure and incorporates physical prior information such as smoothness and non-negativity constraints. To test the performance of our reconstruction approach, we apply it to a dataset simulated from a known ground truth density, and validate it by comparing our recoveries to those obtained by the widely used pPXF software.

math.NA↗

arXiv2022

A numerical comparison of some heuristic stopping rules for nonlinear Landweber iteration

The choice of a suitable regularization parameter is an important part of most regularization methods for inverse problems. In the absence of reliable estimates of the noise level, heuristic parameter choice rules can be used to accomplish this task. While they are already fairly well-understood and tested in the case of linear problems, not much is known about their behaviour for nonlinear problems and even less in the respective case of iterative regularization. Hence, in this paper, we numerically study the performance of some of these rules when used to determine a stopping index for Landweber iteration for various nonlinear inverse problems. These are chosen from different practically relevant fields such as integral equations, parameter estimation, and tomography.

math.NA↗

arXiv2021

Direction dependent Point spread function reconstruction for Multi-Conjugate Adaptive Optics on Giant Segmented Mirror Telescopes

Modern Giant Segmented Mirror Telescopes (GSMT) like the Extremely Large Telescope (ELT), currently under construction depend heavily on Adaptive Optics (AO) systems to correct for atmospheric turbulence. To be able to correct wider fields of view (FoV), Multi-Conjugate Adaptive Optics (MCAO) systems were introduced, which use multiple guide stars to obtain an almost uniform correction over the FoV. However, a residual blur remains in the astronmical images due to the time delay stemming from the wavefront sensor (WFS) integration time and temporal response of the deformable mirror(s) (DM). This results in a blur which can be mathematically described by a convolution of the true image with the point spread function (PSF). Due to the nature of the atmosphere and its correction, the PSF is spatially varying. In this paper, we present an algorithm for MCAO PSF reconstruction adapted to the needs of GSMTs in a storage efficient way. In particular, the PSF reconstruction algorithm for Single Conjugate Adaptive Optics (SCAO) from [40] is combined with an algorithm for atmospheric tomography from [33] to obtain a direction dependent reconstruction of the post-AO PSF. Results obtained in an end-to-end simulation tool show qualitatively good reconstruction of the PSF compared to the PSF calculated directly from the simulated incoming wavefront. Furthermore, the used algorithm has a reasonable runtime and memory consumption.

astro-ph.IM↗

arXiv2021

Phase-contrast THz-CT for non-destructive testing

A new approach for image reconstruction in THz computed tomography (THz-CT) is presented. Based on a geometrical optics model containing the THz signal amplitude and phase, a novel algorithm for extracting an average phase from the measured THz signals is derived. Applying the algorithm results in a phase-contrast sinogram, which is further used for image reconstruction. For experimental validation, a fast THz time-domain spectrometer (THz-TDS) in transmission geometry is employed, enabling CT measurements within several minutes. Quantitative evaluation of reconstructed 3D printed plastic profiles reveals the potential of our approach in non-destructive testing of plastic profiles.

physics.app-ph↗

arXiv2021

Robust and bias-free localization of individual fixed dipole emitters achieving the Cramér Rao bound

Single molecule localization microscopy has the potential to resolve structural details of biological samples at the nanometer length scale. However, to fully exploit the resolution it is crucial to account for the anisotropic emission characteristics of fluorescence dipole emitters. In case of slight residual defocus, localization estimates may well be biased by tens of nanometers. We show here that astigmatic imaging in combination with information about the dipole orientation allows to extract the position of the dipole emitters without localization bias and down to a precision of ~1nm, thereby reaching the corresponding Cramér Rao bound. The approach is showcased with simulated data for various dipole orientations, and parameter settings realistic for real life experiments.

physics.optics↗

arXiv2021

Challenges for Optical Flow Estimates in Elastography

In this paper, we consider visualization of displacement fields via optical flow methods in elastographic experiments consisting of a static compression of a sample. We propose an elastographic optical flow method (EOFM) which takes into account experimental constraints, such as appropriate boundary conditions, the use of speckle information, as well as the inclusion of structural information derived from knowledge of the background material. We present numerical results based on both simulated and experimental data from an elastography experiment in order to demonstrate the relevance of our proposed approach.

math.NA↗

arXiv2021

Frame Decompositions of Bounded Linear Operators in Hilbert Spaces with Applications in Tomography

We consider the decomposition of bounded linear operators on Hilbert spaces in terms of functions forming frames. Similar to the singular-value decomposition, the resulting frame decompositions encode information on the structure and ill-posedness of the problem and can be used as the basis for the design and implementation of efficient numerical solution methods. In contrast to the singular-value decomposition, the presented frame decompositions can be derived explicitly for a wide class of operators, in particular for those satisfying a certain stability condition. In order to show the usefulness of this approach, we consider different examples from the field of tomography.

math.NA↗

arXiv2020

A mathematical approach towards THz tomography for non-destructive imaging

In this paper, we consider the imaging problem of terahertz (THz) tomography, in particular as it appears in non-destructive testing. We derive a nonlinear mathematical model describing a full THz tomography experiment, and consider linear approximations connecting THz tomography with standard computerized tomography and the Radon transform. Based on the derived models we propose different reconstruction approaches for solving the THz tomography problem, which we then compare on experimental data obtained from THz measurements of a plastic sample.

math.NA↗

arXiv2020

Displacement field estimation from OCT images utilizing speckle information with applications in quantitative elastography

In this paper, we consider the problem of estimating the internal displacement field of an object which is being subjected to a deformation, from Optical Coherence Tomography (OCT) images before and after compression. For the estimation of the internal displacement field we propose a novel algorithm, which utilizes particular speckle information to enhance the quality of the motion estimation. We present numerical results based on both simulated and experimental data in order to demonstrate the usefulness of our approach, in particular when applied for quantitative elastography, when the material parameters are estimated in a second step based on the internal displacement field.

math.NA↗

arXiv2020

A Frame Decomposition of the Atmospheric Tomography Operator

We consider the problem of atmospheric tomography, as it appears for example in adaptive optics systems for extremely large telescopes. We derive a frame decomposition, i.e., a decomposition in terms of a frame, of the underlying atmospheric tomography operator, extending the singular-value-type decomposition results of Neubauer and Ramlau (2017) by allowing a mixture of both natural and laser guide stars, as well as arbitrary aperture shapes. Based on both analytical considerations as well as numerical illustrations, we provide insight into the properties of the derived frame decomposition and its building blocks.

math.NA↗

arXiv2020

A note on the minimization of a Tikhonov functional with $\ell^1$-penalty

In this paper, we consider the minimization of a Tikhonov functional with an $\ell_1$ penalty for solving linear inverse problems with sparsity constraints. One of the many approaches used to solve this problem uses the Nemskii operator to transform the Tikhonov functional into one with an $\ell_2$ penalty term but a nonlinear operator. The transformed problem can then be analyzed and minimized using standard methods. However, by the nature of this transform, the resulting functional is only once continuously differentiable, which prohibits the use of second order methods. Hence, in this paper, we propose a different transformation, which leads to a twice differentiable functional that can now be minimized using efficient second order methods like Newton's method. We provide a convergence analysis of our proposed scheme, as well as a number of numerical results showing the usefulness of our proposed approach.

math.NA↗

arXiv2020

A Conjugate-Gradient Approach to the Parameter Estimation Problem of Magnetic Resonance Advection Imaging

We consider the inverse problem of estimating the spatially varying pulse wave velocity in blood vessels in the brain from dynamic MRI data, as it appears in the recently proposed imaging technique of Magnetic Resonance Advection Imaging (MRAI). The problem is formulated as a linear operator equation with a noisy operator and solved using a conjugate gradient type approach. Numerical examples on experimental data show the usefulness and advantages of the developed algorithm in comparison to previously proposed methods.

math.NA↗

arXiv2018

Limited Angle Acousto-Electrical Tomography

This paper considers the reconstruction problem in Acousto-Electrical Tomography, i.e., the problem of estimating a spatially varying conductivity in a bounded domain from measurements of the internal power densities resulting from different prescribed boundary conditions. Particular emphasis is placed on the limited angle scenario, in which the boundary conditions are supported only on a part of the boundary. The reconstruction problem is formulated as an optimization problem in a Hilbert space setting and solved using Landweber iteration. The resulting algorithm is implemented numerically in two spatial dimensions and tested on simulated data. The results quantify the intuition that features close to the measurement boundary are stably reconstructed and features further away are less well reconstructed. Finally, the ill-posedness of the limited angle problem is quantified numerically using the singular value decomposition of the corresponding linearized problem.

math.NA↗

arXiv2018

Nesterov's Accelerated Gradient Method for Nonlinear Ill-Posed Problems with a Locally Convex Residual Functional

In this paper, we consider Nesterov's Accelerated Gradient method for solving Nonlinear Inverse and Ill-Posed Problems. Known to be a fast gradient-based iterative method for solving well-posed convex optimization problems, this method also leads to promising results for ill-posed problems. Here, we provide a convergence analysis for ill-posed problems of this method based on the assumption of a locally convex residual functional. Furthermore, we demonstrate the usefulness of the method on a number of numerical examples based on a nonlinear diagonal operator and on an inverse problem in auto-convolution.

math.NA↗

arXiv2018

Lamé Parameter Estimation from Static Displacement Field Measurements in the Framework of Nonlinear Inverse Problems

We consider a problem of quantitative static elastography, the estimation of the Lamé parameters from internal displacement field data. This problem is formulated as a nonlinear operator equation. To solve this equation, we investigate the Landweber iteration both analytically and numerically. The main result of this paper is the verification of a nonlinearity condition in an infinite dimensional Hilbert space context. This condition guarantees convergence of iterative regularization methods. Furthermore, numerical examples for recovery of the Lamé parameters from displacement data simulating a static elastography experiment are presented.

math.NA↗