arXiv subjects

Subhashini Venugopalan

Publications and source records attributed to Subhashini Venugopalan.

At least 19 recordsLinked to original sources

arXiv2026

Idea Search: Guiding Tree Search with Ideas to Explore Diverse Scientific Methods

Tree Search-based test-time scaling of LLMs is a powerful tool for automated scientific coding. However, pure Tree Search sometimes struggles with systematic exploration, becoming trapped in local optima, or unproductive loops, especially in the vast search space of scientific methods. To address this limitation, we propose Idea Search, a framework that systematically integrates a dynamic "Idea Bank" into Tree Search. Idea Search involves three steps: (1) decomposing existing methods into atomic ideas, (2) sampling from this bank of ideas to guide branches of code mutations, and (3) dynamically updating the bank with new ideas discovered through execution. On single-cell RNA-sequencing (scRNA-seq) batch integration, Idea Search reliably breaks the plateau of a strong pure Tree Search baseline, improving the mean score from 0.678 to 0.697 and reaching a best score of 0.728. We then characterize which design choices drive these gains: bank augmentation helps bandit sampling but not random sampling, "Exploratory" prompting that prioritizes new ideas surfaces the rare best-performing solutions, while increasing sampling-level exploration is counterproductive.

cs.LG↗

arXiv2026

An AI system to help scientists write expert-level empirical software

The cycle of scientific discovery is frequently bottlenecked by the slow, manual creation of software to support computational experiments\cite{hannay2009how}. To address this, we present Empirical Research Assistance (ERA), an AI system that creates expert-level scientific software whose goal is to maximize a quality metric. The system uses a Large Language Model (LLM) and Tree Search (TS)\cite{silver2016mastering} to systematically improve the quality metric and intelligently navigate the large space of possible solutions. ERA achieves expert-level results when it explores and integrates complex research ideas from external sources. The effectiveness of tree search is demonstrated across a diverse range of tasks. In bioinformatics, ERA discovered 40 novel methods for single-cell data analysis that outperformed the top human-developed methods on a public leaderboard. In epidemiology, ERA generated 14 models that outperformed the CDC ensemble and all other individual models for forecasting COVID-19 hospitalizations. ERA also produced expert-level software for geospatial analysis, neural activity prediction in zebrafish, and numerical solution of integrals, and a novel rule-based construction for time series forecasting. By devising and implementing novel solutions to diverse tasks, ERA represents a significant step towards accelerating scientific progress.

cs.AI↗

arXiv2026

MAgSeg: Segmentation of Agricultural Landscapes in High-Resolution Satellite Imagery using Multimodal Large Language Models

Agricultural landscape segmentation in the Global South is challenging as it is characterized by fragmented plots, high intra-class variance, and a scarcity of labeled training data. Recent advances in segmentation have been made by Multimodal Large Language Models (MLLMs). However, current approaches encounter critical context length bottlenecks and a domain alignment gap in understanding satellite features. We address these limitations through MAgSeg, a novel, decoder-free MLLM segmentation approach. MAgSeg is an architecturally efficient approach that enables standard MLLMs to perform segmentation of complex smallholder agricultural landscapes from high-resolution satellite imagery, without requiring auxiliary vision decoders. We introduce a novel instruction tuning data format designed to enable scalable fine-tuning and post-training on high resolution satellite imagery, which enables MAgSeg to learn from the global context of the image while generating text tokens for only a patch within the image. Extensive evaluations on datasets spanning three countries in the Global South demonstrate that MAgSeg significantly outperforms state-of-the-art MLLM baselines, offering a scalable solution to map smallholder agricultural environments.

cs.CV↗

arXiv2026

WAXAL: A Large-Scale Multilingual African Language Speech Corpus

The advancement of speech technology has predominantly favored high-resource languages, creating a significant digital divide for speakers of most Sub-Saharan African languages. To address this gap, we introduce WAXAL, a large-scale, openly accessible speech dataset for 24 languages representing over 100 million speakers. The collection consists of two main components: an Automated Speech Recognition (ASR) dataset containing approximately 1,250 hours of transcribed, natural speech from a diverse range of speakers, and a Text-to-Speech (TTS) dataset with around 235 hours of high-quality, single-speaker recordings reading phonetically balanced scripts. This paper details our methodology for data collection, annotation, and quality control, which involved partnerships with four African academic and community organizations. We provide a detailed statistical overview of the dataset and discuss its potential limitations and ethical considerations. The WAXAL datasets are released at https://huggingface.co/datasets/google/WaxalNLP under the permissive CC-BY-4.0 license to catalyze research, enable the development of inclusive technologies, and serve as a vital resource for the digital preservation of these languages.

eess.AS↗

arXiv2025

Towards a Single ASR Model That Generalizes to Disordered Speech

This study investigates the impact of integrating a dataset of disordered speech recordings ($\sim$1,000 hours) into the fine-tuning of a near state-of-the-art ASR baseline system. Contrary to what one might expect, despite the data being less than 1% of the training data of the ASR system, we find a considerable improvement in disordered speech recognition accuracy. Specifically, we observe a 33% improvement on prompted speech, and a 26% improvement on a newly gathered spontaneous, conversational dataset of disordered speech. Importantly, there is no significant performance decline on standard speech recognition benchmarks. Further, we observe that the proposed tuning strategy helps close the gap between the baseline system and personalized models by 64% highlighting the significant progress as well as the room for improvement. Given the substantial benefits of our findings, this experiment suggests that from a fairness perspective, incorporating a small fraction of high quality disordered speech data in a training recipe is an easy step that could be done to make speech technology more accessible for users with speech disabilities.

eess.AS↗

arXiv2025

Expert Evaluation of LLM World Models: A High-$T_c$ Superconductivity Case Study

Large Language Models (LLMs) show great promise as a powerful tool for scientific literature exploration. However, their effectiveness in providing scientifically accurate and comprehensive answers to complex questions within specialized domains remains an active area of research. Using the field of high-temperature cuprates as an exemplar, we evaluate the ability of LLM systems to understand the literature at the level of an expert. We construct an expert-curated database of 1,726 scientific papers that covers the history of the field, and a set of 67 expert-formulated questions that probe deep understanding of the literature. We then evaluate six different LLM-based systems for answering these questions, including both commercially available closed models and a custom retrieval-augmented generation (RAG) system capable of retrieving images alongside text. Experts then evaluate the answers of these systems against a rubric that assesses balanced perspectives, factual comprehensiveness, succinctness, and evidentiary support. Among the six systems two using RAG on curated literature outperformed existing closed models across key metrics, particularly in providing comprehensive and well-supported answers. We discuss promising aspects of LLM performances as well as critical short-comings of all the models. The set of expert-formulated questions and the rubric will be valuable for assessing expert level performance of LLM based reasoning systems.

cond-mat.supr-con↗

arXiv2025

CURIE: Evaluating LLMs On Multitask Scientific Long Context Understanding and Reasoning

Scientific problem-solving involves synthesizing information while applying expert knowledge. We introduce CURIE, a scientific long-Context Understanding,Reasoning and Information Extraction benchmark to measure the potential of Large Language Models (LLMs) in scientific problem-solving and assisting scientists in realistic workflows. This benchmark introduces ten challenging tasks with a total of 580 problems and solution pairs curated by experts in six disciplines - materials science, condensed matter physics, quantum computing, geospatial analysis, biodiversity, and proteins - covering both experimental and theoretical work-flows in science. We evaluate a range of closed and open LLMs on tasks in CURIE which requires domain expertise, comprehension of long in-context information,and multi-step reasoning. While Gemini Flash 2.0 and Claude-3 show consistent high comprehension across domains, the popular GPT-4o and command-R+ fail dramatically on protein sequencing tasks. With the best performance at 32% there is much room for improvement for all models. We hope that insights gained from CURIE can guide the future development of LLMs in sciences. Evaluation code and data are in https://github.com/google/curie

cs.CL↗

arXiv2025

FEABench: Evaluating Language Models on Multiphysics Reasoning Ability

Building precise simulations of the real world and invoking numerical solvers to answer quantitative problems is an essential requirement in engineering and science. We present FEABench, a benchmark to evaluate the ability of large language models (LLMs) and LLM agents to simulate and solve physics, mathematics and engineering problems using finite element analysis (FEA). We introduce a comprehensive evaluation scheme to investigate the ability of LLMs to solve these problems end-to-end by reasoning over natural language problem descriptions and operating COMSOL Multiphysics$^\circledR$, an FEA software, to compute the answers. We additionally design a language model agent equipped with the ability to interact with the software through its Application Programming Interface (API), examine its outputs and use tools to improve its solutions over multiple iterations. Our best performing strategy generates executable API calls 88% of the time. LLMs that can successfully interact with and operate FEA software to solve problems such as those in our benchmark would push the frontiers of automation in engineering. Acquiring this capability would augment LLMs' reasoning skills with the precision of numerical solvers and advance the development of autonomous systems that can tackle complex problems in the real world. The code is available at https://github.com/google/feabench

cs.AI↗

arXiv2025

Towards AI-assisted Academic Writing

We present components of an AI-assisted academic writing system including citation recommendation and introduction writing. The system recommends citations by considering the user's current document context to provide relevant suggestions. It generates introductions in a structured fashion, situating the contributions of the research relative to prior work. We demonstrate the effectiveness of the components through quantitative evaluations. Finally, the paper presents qualitative research exploring how researchers incorporate citations into their writing workflows. Our findings indicate that there is demand for precise AI-assisted writing systems and simple, effective methods for meeting those needs.

cs.AI↗

arXiv2025

SPIQA: A Dataset for Multimodal Question Answering on Scientific Papers

Seeking answers to questions within long scientific research articles is a crucial area of study that aids readers in quickly addressing their inquiries. However, existing question-answering (QA) datasets based on scientific papers are limited in scale and focus solely on textual content. We introduce SPIQA (Scientific Paper Image Question Answering), the first large-scale QA dataset specifically designed to interpret complex figures and tables within the context of scientific research articles across various domains of computer science. Leveraging the breadth of expertise and ability of multimodal large language models (MLLMs) to understand figures, we employ automatic and manual curation to create the dataset. We craft an information-seeking task on interleaved images and text that involves multiple images covering plots, charts, tables, schematic diagrams, and result visualizations. SPIQA comprises 270K questions divided into training, validation, and three different evaluation splits. Through extensive experiments with 12 prominent foundational models, we evaluate the ability of current multimodal systems to comprehend the nuanced aspects of research articles. Additionally, we propose a Chain-of-Thought (CoT) evaluation strategy with in-context retrieval that allows fine-grained, step-by-step assessment and improves model performance. We further explore the upper bounds of performance enhancement with additional textual information, highlighting its promising potential for future research and the dataset's impact on revolutionizing how we interact with scientific literature.

cs.CL↗

arXiv2024

Speech Recognition With LLMs Adapted to Disordered Speech Using Reinforcement Learning

We introduce a large language model (LLM) capable of processing speech inputs and show that tuning it further with reinforcement learning on human preference (RLHF) enables it to adapt better to disordered speech than traditional fine-tuning. Our method replaces low-frequency text tokens in an LLM's vocabulary with audio tokens and enables the model to recognize speech by fine-tuning it on speech with transcripts. We then use RL with rewards based on syntactic and semantic accuracy measures generalizing the LLM further to recognize disordered speech. While the resulting LLM does not outperform existing systems for speech recognition, we find that tuning with reinforcement learning using custom rewards leads to substantially better performance than supervised fine-tuning of the language model, specifically when adapting to speech in a different setting. This presents a compelling alternative tuning strategy for speech recognition using large language models.

eess.AS↗

arXiv2024

Quantum Many-Body Physics Calculations with Large Language Models

Large language models (LLMs) have demonstrated an unprecedented ability to perform complex tasks in multiple domains, including mathematical and scientific reasoning. We demonstrate that with carefully designed prompts, LLMs can accurately carry out key calculations in research papers in theoretical physics. We focus on a broadly used approximation method in quantum physics: the Hartree-Fock method, requiring an analytic multi-step calculation deriving approximate Hamiltonian and corresponding self-consistency equations. To carry out the calculations using LLMs, we design multi-step prompt templates that break down the analytic calculation into standardized steps with placeholders for problem-specific information. We evaluate GPT-4's performance in executing the calculation for 15 research papers from the past decade, demonstrating that, with correction of intermediate steps, it can correctly derive the final Hartree-Fock Hamiltonian in 13 cases and makes minor errors in 2 cases. Aggregating across all research papers, we find an average score of 87.5 (out of 100) on the execution of individual calculation steps. Overall, the requisite skill for doing these calculations is at the graduate level in quantum condensed matter theory. We further use LLMs to mitigate the two primary bottlenecks in this evaluation process: (i) extracting information from papers to fill in templates and (ii) automatic scoring of the calculation steps, demonstrating good results in both cases. The strong performance is the first step for developing algorithms that automatically explore theoretical hypotheses at an unprecedented scale.

physics.comp-ph↗

arXiv2024

A Design Space for Intelligent and Interactive Writing Assistants

In our era of rapid technological advancement, the research landscape for writing assistants has become increasingly fragmented across various research communities. We seek to address this challenge by proposing a design space as a structured way to examine and explore the multidimensional space of intelligent and interactive writing assistants. Through a large community collaboration, we explore five aspects of writing assistants: task, user, technology, interaction, and ecosystem. Within each aspect, we define dimensions (i.e., fundamental components of an aspect) and codes (i.e., potential options for each dimension) by systematically reviewing 115 papers. Our design space aims to offer researchers and designers a practical tool to navigate, comprehend, and compare the various possibilities of writing assistants, and aid in the envisioning and design of new writing assistants.

cs.HC↗

arXiv2023

Parameter Efficient Tuning Allows Scalable Personalization of LLMs for Text Entry: A Case Study on Abbreviation Expansion

Abbreviation expansion is a strategy used to speed up communication by limiting the amount of typing and using a language model to suggest expansions. Here we look at personalizing a Large Language Model's (LLM) suggestions based on prior conversations to enhance the relevance of predictions, particularly when the user data is small (~1000 samples). Specifically, we compare fine-tuning, prompt-tuning, and retrieval augmented generation of expanded text suggestions for abbreviated inputs. Our case study with a deployed 8B parameter LLM on a real user living with ALS, and experiments on movie character personalization indicates that (1) customization may be necessary in some scenarios and prompt-tuning generalizes well to those, (2) fine-tuning on in-domain data (with as few as 600 samples) still shows some gains, however (3) retrieval augmented few-shot selection also outperforms fine-tuning. (4) Parameter efficient tuning allows for efficient and scalable personalization. For prompt-tuning, we also find that initializing the learned "soft-prompts" to user relevant concept tokens leads to higher accuracy than random initialization.

cs.CL↗

arXiv2023

Using Large Language Models to Accelerate Communication for Users with Severe Motor Impairments

Finding ways to accelerate text input for individuals with profound motor impairments has been a long-standing area of research. Closing the speed gap for augmentative and alternative communication (AAC) devices such as eye-tracking keyboards is important for improving the quality of life for such individuals. Recent advances in neural networks of natural language pose new opportunities for re-thinking strategies and user interfaces for enhanced text-entry for AAC users. In this paper, we present SpeakFaster, consisting of large language models (LLMs) and a co-designed user interface for text entry in a highly-abbreviated form, allowing saving 57% more motor actions than traditional predictive keyboards in offline simulation. A pilot study with 19 non-AAC participants typing on a mobile device by hand demonstrated gains in motor savings in line with the offline simulation, while introducing relatively small effects on overall typing speed. Lab and field testing on two eye-gaze typing users with amyotrophic lateral sclerosis (ALS) demonstrated text-entry rates 29-60% faster than traditional baselines, due to significant saving of expensive keystrokes achieved through phrase and word predictions from context-aware LLMs. These findings provide a strong foundation for further exploration of substantially-accelerated text communication for motor-impaired users and demonstrate a direction for applying LLMs to text-based user interfaces.

cs.HC↗

arXiv2023

Accurate Prediction of Experimental Band Gaps from Large Language Model-Based Data Extraction

Machine learning is transforming materials discovery by providing rapid predictions of material properties, which enables large-scale screening for target materials. However, such models require training data. While automated data extraction from scientific literature has potential, current auto-generated datasets often lack sufficient accuracy and critical structural and processing details of materials that influence the properties. Using band gap as an example, we demonstrate Large language model (LLM)-prompt-based extraction yields an order of magnitude lower error rate. Combined with additional prompts to select a subset of experimentally measured properties from pure, single-crystalline bulk materials, this results in an automatically extracted dataset that's larger and more diverse than the largest existing human-curated database of experimental band gaps. Compared to the existing human-curated database, we show the model trained on our extracted database achieves a 19% reduction in the mean absolute error of predicted band gaps. Finally, we demonstrate that LLMs are able to train models predicting band gap on the extracted data, achieving an automated pipeline of data extraction to materials property prediction.

cond-mat.mtrl-sci↗

arXiv2023

Clinical BERTScore: An Improved Measure of Automatic Speech Recognition Performance in Clinical Settings

Automatic Speech Recognition (ASR) in medical contexts has the potential to save time, cut costs, increase report accuracy, and reduce physician burnout. However, the healthcare industry has been slower to adopt this technology, in part due to the importance of avoiding medically-relevant transcription mistakes. In this work, we present the Clinical BERTScore (CBERTScore), an ASR metric that penalizes clinically-relevant mistakes more than others. We demonstrate that this metric more closely aligns with clinician preferences on medical sentences as compared to other metrics (WER, BLUE, METEOR, etc), sometimes by wide margins. We collect a benchmark of 18 clinician preferences on 149 realistic medical sentences called the Clinician Transcript Preference benchmark (CTP) and make it publicly available for the community to further develop clinically-aware ASR metrics. To our knowledge, this is the first public dataset of its kind. We demonstrate that CBERTScore more closely matches what clinicians prefer.

eess.AS↗

arXiv2023

Speech Intelligibility Classifiers from 550k Disordered Speech Samples

We developed dysarthric speech intelligibility classifiers on 551,176 disordered speech samples contributed by a diverse set of 468 speakers, with a range of self-reported speaking disorders and rated for their overall intelligibility on a five-point scale. We trained three models following different deep learning approaches and evaluated them on ~94K utterances from 100 speakers. We further found the models to generalize well (without further training) on the TORGO database (100% accuracy), UASpeech (0.93 correlation), ALS-TDI PMP (0.81 AUC) datasets as well as on a dataset of realistic unprompted speech we gathered (106 dysarthric and 76 control speakers,~2300 samples).

eess.AS↗