arXiv subjects

Subhashini Venugopalan

Publications and source records attributed to Subhashini Venugopalan.

At least 37 records · Page 2Linked to original sources

arXiv2023

Speech Intelligibility Classifiers from 550k Disordered Speech Samples

We developed dysarthric speech intelligibility classifiers on 551,176 disordered speech samples contributed by a diverse set of 468 speakers, with a range of self-reported speaking disorders and rated for their overall intelligibility on a five-point scale. We trained three models following different deep learning approaches and evaluated them on ~94K utterances from 100 speakers. We further found the models to generalize well (without further training) on the TORGO database (100% accuracy), UASpeech (0.93 correlation), ALS-TDI PMP (0.81 AUC) datasets as well as on a dataset of realistic unprompted speech we gathered (106 dysarthric and 76 control speakers,~2300 samples).

eess.AS↗

arXiv2023

Is Attention All That NeRF Needs?

We present Generalizable NeRF Transformer (GNT), a transformer-based architecture that reconstructs Neural Radiance Fields (NeRFs) and learns to renders novel views on the fly from source views. While prior works on NeRFs optimize a scene representation by inverting a handcrafted rendering equation, GNT achieves neural representation and rendering that generalizes across scenes using transformers at two stages. (1) The view transformer leverages multi-view geometry as an inductive bias for attention-based scene representation, and predicts coordinate-aligned features by aggregating information from epipolar lines on the neighboring views. (2) The ray transformer renders novel views using attention to decode the features from the view transformer along the sampled points during ray marching. Our experiments demonstrate that when optimized on a single scene, GNT can successfully reconstruct NeRF without an explicit rendering formula due to the learned ray renderer. When trained on multiple scenes, GNT consistently achieves state-of-the-art performance when transferring to unseen scenes and outperform all other methods by ~10% on average. Our analysis of the learned attention maps to infer depth and occlusion indicate that attention enables learning a physically-grounded rendering. Our results show the promise of transformers as a universal modeling tool for graphics. Please refer to our project page for video results: https://vita-group.github.io/GNT/.

cs.CV↗

arXiv2022

Assessing ASR Model Quality on Disordered Speech using BERTScore

Word Error Rate (WER) is the primary metric used to assess automatic speech recognition (ASR) model quality. It has been shown that ASR models tend to have much higher WER on speakers with speech impairments than typical English speakers. It is hard to determine if models can be be useful at such high error rates. This study investigates the use of BERTScore, an evaluation metric for text generation, to provide a more informative measure of ASR model quality and usefulness. Both BERTScore and WER were compared to prediction errors manually annotated by Speech Language Pathologists for error type and assessment. BERTScore was found to be more correlated with human assessment of error type and assessment. BERTScore was specifically more robust to orthographic changes (contraction and normalization errors) where meaning was preserved. Furthermore, BERTScore was a better fit of error assessment than WER, as measured using an ordinal logistic regression and the Akaike's Information Criterion (AIC). Overall, our findings suggest that BERTScore can complement WER when assessing ASR model performance from a practical perspective, especially for accessibility applications where models are useful even at lower accuracy than for typical speech.

eess.AS↗

arXiv2022

Context-Aware Abbreviation Expansion Using Large Language Models

Motivated by the need for accelerating text entry in augmentative and alternative communication (AAC) for people with severe motor impairments, we propose a paradigm in which phrases are abbreviated aggressively as primarily word-initial letters. Our approach is to expand the abbreviations into full-phrase options by leveraging conversation context with the power of pretrained large language models (LLMs). Through zero-shot, few-shot, and fine-tuning experiments on four public conversation datasets, we show that for replies to the initial turn of a dialog, an LLM with 64B parameters is able to exactly expand over 70% of phrases with abbreviation length up to 10, leading to an effective keystroke saving rate of up to about 77% on these exact expansions. Including a small amount of context in the form of a single conversation turn more than doubles abbreviation expansion accuracies compared to having no context, an effect that is more pronounced for longer phrases. Additionally, the robustness of models against typo noise can be enhanced through fine-tuning on noisy data.

cs.CL↗

arXiv2022

TRILLsson: Distilled Universal Paralinguistic Speech Representations

Recent advances in self-supervision have dramatically improved the quality of speech representations. However, deployment of state-of-the-art embedding models on devices has been restricted due to their limited public availability and large resource footprint. Our work addresses these issues by publicly releasing a collection of paralinguistic speech models that are small and near state-of-the-art performance. Our approach is based on knowledge distillation, and our models are distilled on public data only. We explore different architectures and thoroughly evaluate our models on the Non-Semantic Speech (NOSS) benchmark. Our largest distilled model is less than 15% the size of the original model (314MB vs 2.2GB), achieves over 96% the accuracy on 6 of 7 tasks, and is trained on 6.5% the data. The smallest model is 1% in size (22MB) and achieves over 90% the accuracy on 6 of 7 tasks. Our models outperform the open source Wav2Vec 2.0 model on 6 of 7 tasks, and our smallest model outperforms the open source Wav2Vec 2.0 on both emotion recognition tasks despite being 7% the size.

eess.AS↗

arXiv2021

Using a Cross-Task Grid of Linear Probes to Interpret CNN Model Predictions On Retinal Images

We analyze a dataset of retinal images using linear probes: linear regression models trained on some "target" task, using embeddings from a deep convolutional (CNN) model trained on some "source" task as input. We use this method across all possible pairings of 93 tasks in the UK Biobank dataset of retinal images, leading to ~164k different models. We analyze the performance of these linear probes by source and target task and by layer depth. We observe that representations from the middle layers of the network are more generalizable. We find that some target tasks are easily predicted irrespective of the source task, and that some other target tasks are more accurately predicted from correlated source tasks than from embeddings trained on the same task.

cs.LG↗

arXiv2021

Comparing Supervised Models And Learned Speech Representations For Classifying Intelligibility Of Disordered Speech On Selected Phrases

Automatic classification of disordered speech can provide an objective tool for identifying the presence and severity of speech impairment. Classification approaches can also help identify hard-to-recognize speech samples to teach ASR systems about the variable manifestations of impaired speech. Here, we develop and compare different deep learning techniques to classify the intelligibility of disordered speech on selected phrases. We collected samples from a diverse set of 661 speakers with a variety of self-reported disorders speaking 29 words or phrases, which were rated by speech-language pathologists for their overall intelligibility using a five-point Likert scale. We then evaluated classifiers developed using 3 approaches: (1) a convolutional neural network (CNN) trained for the task, (2) classifiers trained on non-semantic speech representations from CNNs that used an unsupervised objective [1], and (3) classifiers trained on the acoustic (encoder) embeddings from an ASR system trained on typical speech [2]. We found that the ASR encoder's embeddings considerably outperform the other two on detecting and classifying disordered speech. Further analysis shows that the ASR embeddings cluster speech by the spoken phrase, while the non-semantic embeddings cluster speech by speaker. Also, longer phrases are more indicative of intelligibility deficits than single words.

eess.AS↗

arXiv2021

Guided Integrated Gradients: An Adaptive Path Method for Removing Noise

Integrated Gradients (IG) is a commonly used feature attribution method for deep neural networks. While IG has many desirable properties, the method often produces spurious/noisy pixel attributions in regions that are not related to the predicted class when applied to visual models. While this has been previously noted, most existing solutions are aimed at addressing the symptoms by explicitly reducing the noise in the resulting attributions. In this work, we show that one of the causes of the problem is the accumulation of noise along the IG path. To minimize the effect of this source of noise, we propose adapting the attribution path itself -- conditioning the path not just on the image but also on the model being explained. We introduce Adaptive Path Methods (APMs) as a generalization of path methods, and Guided IG as a specific instance of an APM. Empirically, Guided IG creates saliency maps better aligned with the model's prediction and the input image that is being explained. We show through qualitative and quantitative experiments that Guided IG outperforms other, related methods in nearly every experiment.

cs.CV↗

arXiv2021

Scaling Symbolic Methods using Gradients for Neural Model Explanation

Symbolic techniques based on Satisfiability Modulo Theory (SMT) solvers have been proposed for analyzing and verifying neural network properties, but their usage has been fairly limited owing to their poor scalability with larger networks. In this work, we propose a technique for combining gradient-based methods with symbolic techniques to scale such analyses and demonstrate its application for model explanation. In particular, we apply this technique to identify minimal regions in an input that are most relevant for a neural network's prediction. Our approach uses gradient information (based on Integrated Gradients) to focus on a subset of neurons in the first layer, which allows our technique to scale to large networks. The corresponding SMT constraints encode the minimal input mask discovery problem such that after masking the input, the activations of the selected neurons are still above a threshold. After solving for the minimal masks, our approach scores the mask regions to generate a relative ordering of the features within the mask. This produces a saliency map which explains "where a model is looking" when making a prediction. We evaluate our technique on three datasets - MNIST, ImageNet, and Beer Reviews, and demonstrate both quantitatively and qualitatively that the regions generated by our approach are sparser and achieve higher saliency scores compared to the gradient-based methods alone. Code and examples are at - https://github.com/google-research/google-research/tree/master/smug_saliency

cs.LG↗

arXiv2020

Predicting Risk of Developing Diabetic Retinopathy using Deep Learning

Diabetic retinopathy (DR) screening is instrumental in preventing blindness, but faces a scaling challenge as the number of diabetic patients rises. Risk stratification for the development of DR may help optimize screening intervals to reduce costs while improving vision-related outcomes. We created and validated two versions of a deep learning system (DLS) to predict the development of mild-or-worse ("Mild+") DR in diabetic patients undergoing DR screening. The two versions used either three-fields or a single field of color fundus photographs (CFPs) as input. The training set was derived from 575,431 eyes, of which 28,899 had known 2-year outcome, and the remaining were used to augment the training process via multi-task learning. Validation was performed on both an internal validation set (set A; 7,976 eyes; 3,678 with known outcome) and an external validation set (set B; 4,762 eyes; 2,345 with known outcome). For predicting 2-year development of DR, the 3-field DLS had an area under the receiver operating characteristic curve (AUC) of 0.79 (95%CI, 0.78-0.81) on validation set A. On validation set B (which contained only a single field), the 1-field DLS's AUC was 0.70 (95%CI, 0.67-0.74). The DLS was prognostic even after adjusting for available risk factors (p<0.001). When added to the risk factors, the 3-field DLS improved the AUC from 0.72 (95%CI, 0.68-0.76) to 0.81 (95%CI, 0.77-0.84) in validation set A, and the 1-field DLS improved the AUC from 0.62 (95%CI, 0.58-0.66) to 0.71 (95%CI, 0.68-0.75) in validation set B. The DLSs in this study identified prognostic information for DR development from CFPs. This information is independent of and more informative than the available risk factors.

eess.IV↗

arXiv2020

Scientific Discovery by Generating Counterfactuals using Image Translation

Model explanation techniques play a critical role in understanding the source of a model's performance and making its decisions transparent. Here we investigate if explanation techniques can also be used as a mechanism for scientific discovery. We make three contributions: first, we propose a framework to convert predictions from explanation techniques to a mechanism of discovery. Second, we show how generative models in combination with black-box predictors can be used to generate hypotheses (without human priors) that can be critically examined. Third, with these techniques we study classification models for retinal images predicting Diabetic Macular Edema (DME), where recent work showed that a CNN trained on these images is likely learning novel features in the image. We demonstrate that the proposed framework is able to explain the underlying scientific mechanism, thus bridging the gap between the model's performance and human understanding.

cs.CV↗

arXiv2020

Attribution in Scale and Space

We study the attribution problem [28] for deep networks applied to perception tasks. For vision tasks, attribution techniques attribute the prediction of a network to the pixels of the input image. We propose a new technique called \emph{Blur Integrated Gradients}. This technique has several advantages over other methods. First, it can tell at what scale a network recognizes an object. It produces scores in the scale/frequency dimension, that we find captures interesting phenomena. Second, it satisfies the scale-space axioms [14], which imply that it employs perturbations that are free of artifact. We therefore produce explanations that are cleaner and consistent with the operation of deep networks. Third, it eliminates the need for a 'baseline' parameter for Integrated Gradients [31] for perception tasks. This is desirable because the choice of baseline has a significant effect on the explanations. We compare the proposed technique against previous techniques and demonstrate application on three tasks: ImageNet object recognition, Diabetic Retinopathy prediction, and AudioSet audio event identification.

cs.CV↗

arXiv2020

It's easy to fool yourself: Case studies on identifying bias and confounding in bio-medical datasets

Confounding variables are a well known source of nuisance in biomedical studies. They present an even greater challenge when we combine them with black-box machine learning techniques that operate on raw data. This work presents two case studies. In one, we discovered biases arising from systematic errors in the data generation process. In the other, we found a spurious source of signal unrelated to the prediction task at hand. In both cases, our prediction models performed well but under careful examination hidden confounders and biases were revealed. These are cautionary tales on the limits of using machine learning techniques on raw data from scientific experiments.

cs.LG↗

arXiv2019

Predicting optical coherence tomography-derived diabetic macular edema grades from fundus photographs using deep learning

Diabetic eye disease is one of the fastest growing causes of preventable blindness. With the advent of anti-VEGF (vascular endothelial growth factor) therapies, it has become increasingly important to detect center-involved diabetic macular edema (ci-DME). However, center-involved diabetic macular edema is diagnosed using optical coherence tomography (OCT), which is not generally available at screening sites because of cost and workflow constraints. Instead, screening programs rely on the detection of hard exudates in color fundus photographs as a proxy for DME, often resulting in high false positive or false negative calls. To improve the accuracy of DME screening, we trained a deep learning model to use color fundus photographs to predict ci-DME. Our model had an ROC-AUC of 0.89 (95% CI: 0.87-0.91), which corresponds to a sensitivity of 85% at a specificity of 80%. In comparison, three retinal specialists had similar sensitivities (82-85%), but only half the specificity (45-50%, p<0.001 for each comparison with model). The positive predictive value (PPV) of the model was 61% (95% CI: 56-66%), approximately double the 36-38% by the retinal specialists. In addition to predicting ci-DME, our model was able to detect the presence of intraretinal fluid with an AUC of 0.81 (95% CI: 0.81-0.86) and subretinal fluid with an AUC of 0.88 (95% CI: 0.85-0.91). The ability of deep learning algorithms to make clinically relevant predictions that generally require sophisticated 3D-imaging equipment from simple 2D images has broad relevance to many other applications in medical imaging.

cs.CV↗

arXiv2017

Captioning Images with Diverse Objects

Recent captioning models are limited in their ability to scale and describe concepts unseen in paired image-text corpora. We propose the Novel Object Captioner (NOC), a deep visual semantic captioning model that can describe a large number of object categories not present in existing image-caption datasets. Our model takes advantage of external sources -- labeled images from object recognition datasets, and semantic knowledge extracted from unannotated text. We propose minimizing a joint objective which can learn from these diverse data sources and leverage distributional semantic embeddings, enabling the model to generalize and describe novel objects outside of image-caption datasets. We demonstrate that our model exploits semantic information to generate captions for hundreds of object categories in the ImageNet object recognition dataset that are not observed in MSCOCO image-caption training data, as well as many categories that are observed very rarely. Both automatic evaluations and human judgements show that our model considerably outperforms prior work in being able to describe many more categories of objects.

cs.CV↗

arXiv2017

Detecting Cancer Metastases on Gigapixel Pathology Images

Each year, the treatment decisions for more than 230,000 breast cancer patients in the U.S. hinge on whether the cancer has metastasized away from the breast. Metastasis detection is currently performed by pathologists reviewing large expanses of biological tissues. This process is labor intensive and error-prone. We present a framework to automatically detect and localize tumors as small as 100 x 100 pixels in gigapixel microscopy images sized 100,000 x 100,000 pixels. Our method leverages a convolutional neural network (CNN) architecture and obtains state-of-the-art results on the Camelyon16 dataset in the challenging lesion-level tumor detection task. At 8 false positives per image, we detect 92.4% of the tumors, relative to 82.7% by the previous best automated approach. For comparison, a human pathologist attempting exhaustive search achieved 73.2% sensitivity. We achieve image-level AUC scores above 97% on both the Camelyon16 test set and an independent set of 110 slides. In addition, we discover that two slides in the Camelyon16 training set were erroneously labeled normal. Our approach could considerably reduce false negative rates in metastasis detection.

cs.CV↗

arXiv2016

Improving LSTM-based Video Description with Linguistic Knowledge Mined from Text

This paper investigates how linguistic knowledge mined from large text corpora can aid the generation of natural language descriptions of videos. Specifically, we integrate both a neural language model and distributional semantics trained on large text corpora into a recent LSTM-based architecture for video description. We evaluate our approach on a collection of Youtube videos as well as two large movie description datasets showing significant improvements in grammaticality while modestly improving descriptive quality.

cs.CL↗

arXiv2016

Utilizing Large Scale Vision and Text Datasets for Image Segmentation from Referring Expressions

Image segmentation from referring expressions is a joint vision and language modeling task, where the input is an image and a textual expression describing a particular region in the image; and the goal is to localize and segment the specific image region based on the given expression. One major difficulty to train such language-based image segmentation systems is the lack of datasets with joint vision and text annotations. Although existing vision datasets such as MS COCO provide image captions, there are few datasets with region-level textual annotations for images, and these are often smaller in scale. In this paper, we explore how existing large scale vision-only and text-only datasets can be utilized to train models for image segmentation from referring expressions. We propose a method to address this problem, and show in experiments that our method can help this joint vision and language modeling task with vision-only and text-only data and outperforms previous results.

cs.CV↗