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Taufiq Hasan

Publications and source records attributed to Taufiq Hasan.

At least 19 recordsLinked to original sources

Context-Aware Asymmetric Ensembling for Interpretable Retinopathy of Prematurity Screening via Active Query and Vascular Attention

Retinopathy of Prematurity (ROP) is among the major causes of preventable childhood blindness. Automated screening remains challenging, primarily due to limited data availability and the complex condition involving both structural staging and microvascular abnormalities. Current deep learning models depend heavily on large private datasets and passive multimodal fusion, which commonly fail to generalize on small, imbalanced public cohorts. We thus propose the Context-Aware Asymmetric Ensemble Model (CAA Ensemble) that simulates clinical reasoning through two specialized streams. First, the Multi-Scale Active Query Network (MS-AQNet) serves as a structure specialist, utilizing clinical contexts as dynamic query vectors to spatially control visual feature extraction for localization of the fibrovascular ridge. Secondly, VascuMIL encodes Vascular Topology Maps (VMAP) within a gated Multiple Instance Learning (MIL) network to precisely identify vascular tortuosity. A synergistic meta-learner ensembles these orthogonal signals to resolve diagnostic discordance across multiple objectives. Tested on a highly imbalanced cohort of 188 infants (6,004 images), the framework attained State-of-the-Art performance on two distinct clinical tasks: achieving a Macro F1-Score of 0.93 for Broad ROP staging and an AUC of 0.996 for Plus Disease detection. Crucially, the system features `Glass Box' transparency through counterfactual attention heatmaps and vascular threat maps, proving that clinical metadata dictates the model's visual search. Additionally, this study demonstrates that architectural inductive bias can serve as an effective bridge for the medical AI data gap.

eess.IV

Phi-SegNet: Phase-Integrated Supervision for Medical Image Segmentation

Deep learning has substantially advanced medical image segmentation, yet achieving robust generalization across diverse imaging modalities and anatomical structures remains a major challenge. A key contributor to this limitation lies in how existing architectures, ranging from CNNs to Transformers and their hybrids, primarily encode spatial information while overlooking frequency-domain representations that capture rich structural and textural cues. Although recent studies have begun exploring spectral information at the feature level, supervision-level integration of frequency cues-crucial for fine-grained object localization-remains largely untapped. To this end, we propose Phi-SegNet, a CNN-based architecture that incorporates phase-aware information at both architectural and optimization levels. The network integrates Bi-Feature Mask Former (BFMF) modules that blend neighboring encoder features to reduce semantic gaps, and Reverse Fourier Attention (RFA) blocks that refine decoder outputs using phase-regularized features. A dedicated phase-aware loss aligns these features with structural priors, forming a closed feedback loop that emphasizes boundary precision. Evaluated on five public datasets spanning X-ray, US, histopathology, MRI, and colonoscopy, Phi-SegNet consistently achieved state-of-the-art performance, with an average relative improvement of 1.54+/-1.26% in IoU and 0.98+/-0.71% in F1-score over the next best-performing model. In cross-dataset generalization scenarios involving unseen datasets from the known domain, it also exhibits robust and superior performance, highlighting its adaptability and modality-agnostic design. These findings demonstrate the potential of leveraging spectral priors in both feature representation and supervision, paving the way for generalized segmentation frameworks that excel in fine-grained object localization. Our code is available on GitHub.

eess.IV

Weakly Supervised Tuberculosis Localization in Chest X-rays through Knowledge Distillation

Tuberculosis (TB) remains one of the leading causes of mortality worldwide, particularly in resource-limited countries. Chest X-ray (CXR) imaging serves as an accessible and cost-effective diagnostic tool but requires expert interpretation, which is often unavailable. Although machine learning models have shown high performance in TB classification, they often depend on spurious correlations and fail to generalize. Besides, building large datasets featuring high-quality annotations for medical images demands substantial resources and input from domain specialists, and typically involves several annotators reaching agreement, which results in enormous financial and logistical expenses. This study repurposes knowledge distillation technique to train CNN models reducing spurious correlations and localize TB-related abnormalities without requiring bounding-box annotations. By leveraging a teacher-student framework with ResNet50 architecture, the proposed method trained on TBX11k dataset achieve impressive 0.2428 mIOU score. Experimental results further reveal that the student model consistently outperforms the teacher, underscoring improved robustness and potential for broader clinical deployment in diverse settings.

cs.CV

LMLCC-Net: A Semi-Supervised Deep Learning Model for Lung Nodule Malignancy Prediction from CT Scans using a Novel Hounsfield Unit-Based Intensity Filtering

Lung cancer is the leading cause of patient mortality in the world. Early diagnosis of malignant pulmonary nodules in CT images can have a significant impact on reducing disease mortality and morbidity. In this work, we propose LMLCC-Net, a novel deep learning framework for classifying nodules from CT scan images using a 3D CNN, considering Hounsfield Unit (HU)-based intensity filtering. Benign and malignant nodules have significant differences in their intensity profile of HU, which was not exploited in the literature. Our method considers the intensity pattern as well as the texture for the prediction of malignancies. LMLCC-Net extracts features from multiple branches that each use a separate learnable HU-based intensity filtering stage. Various combinations of branches and learnable ranges of filters were explored to finally produce the best-performing model. In addition, we propose a semi-supervised learning scheme for labeling ambiguous cases and also developed a lightweight model to classify the nodules. The experimental evaluations are carried out on the LUNA16 dataset. The proposed LMLCC-Net was evaluated using the LUNA16 dataset. Our proposed method achieves a classification accuracy of 91.96%, a sensitivity of 92.94%, and an area under the curve of 94.07%, showing improved performance compared to existing methods The proposed method can have a significant impact in helping radiologists in the classification of pulmonary nodules and improving patient care.

eess.IV

A Multi-Stage Hybrid CNN-Transformer Network for Automated Pediatric Lung Sound Classification

Automated analysis of lung sound auscultation is essential for monitoring respiratory health, especially in regions facing a shortage of skilled healthcare workers. While respiratory sound classification has been widely studied in adults, its ap plication in pediatric populations, particularly in children aged <6 years, remains an underexplored area. The developmental changes in pediatric lungs considerably alter the acoustic proper ties of respiratory sounds, necessitating specialized classification approaches tailored to this age group. To address this, we propose a multistage hybrid CNN-Transformer framework that combines CNN-extracted features with an attention-based architecture to classify pediatric respiratory diseases using scalogram images from both full recordings and individual breath events. Our model achieved an overall score of 0.9039 in binary event classifi cation and 0.8448 in multiclass event classification by employing class-wise focal loss to address data imbalance. At the recording level, the model attained scores of 0.720 for ternary and 0.571 for multiclass classification. These scores outperform the previous best models by 3.81% and 5.94%, respectively. This approach offers a promising solution for scalable pediatric respiratory disease diagnosis, especially in resource-limited settings.

eess.SP

A Self-Attention-Driven Deep Denoiser Model for Real Time Lung Sound Denoising in Noisy Environments

Objective: Lung auscultation is a valuable tool in diagnosing and monitoring various respiratory diseases. However, lung sounds (LS) are significantly affected by numerous sources of contamination, especially when recorded in real-world clinical settings. Conventional denoising models prove impractical for LS denoising, primarily owing to spectral overlap complexities arising from diverse noise sources. To address this issue, we propose a specialized deep-learning model (Uformer) for lung sound denoising. Methods: The proposed Uformer model is constituted of three modules: a Convolutional Neural Network (CNN) encoder module, dedicated to extracting latent features; a Transformer encoder module, employed to further enhance the encoding of unique LS features and effectively capture intricate long-range dependencies; and a CNN decoder module, employed to generate the denoised signals. An ablation study was performed in order to find the most optimal architecture. Results: The performance of the proposed Uformer model was evaluated on lung sounds induced with different types of synthetic and real-world noises. Lung sound signals of -12 dB to 15 dB signal-to-noise ratio (SNR) were considered in testing experiments. The proposed model showed an average SNR improvement of 16.51 dB when evaluated with -12 dB LS signals. Our end-to-end model, with an average SNR improvement of 19.31 dB, outperforms the existing model when evaluated with ambient noise and fewer parameters. Conclusion: Based on the qualitative and quantitative findings in this study, it can be stated that Uformer is robust and generalized to be used in assisting the monitoring of respiratory conditions.

eess.AS

Domain Generalization for Improved Human Activity Recognition in Office Space Videos Using Adaptive Pre-processing

Automatic video activity recognition is crucial across numerous domains like surveillance, healthcare, and robotics. However, recognizing human activities from video data becomes challenging when training and test data stem from diverse domains. Domain generalization, adapting to unforeseen domains, is thus essential. This paper focuses on office activity recognition amidst environmental variability. We propose three pre-processing techniques applicable to any video encoder, enhancing robustness against environmental variations. Our study showcases the efficacy of MViT, a leading state-of-the-art video classification model, and other video encoders combined with our techniques, outperforming state-of-the-art domain adaptation methods. Our approach significantly boosts accuracy, precision, recall and F1 score on unseen domains, emphasizing its adaptability in real-world scenarios with diverse video data sources. This method lays a foundation for more reliable video activity recognition systems across heterogeneous data domains.

cs.CV

BUET Multi-disease Heart Sound Dataset: A Comprehensive Auscultation Dataset for Developing Computer-Aided Diagnostic Systems

Cardiac auscultation, an integral tool in diagnosing cardiovascular diseases (CVDs), often relies on the subjective interpretation of clinicians, presenting a limitation in consistency and accuracy. Addressing this, we introduce the BUET Multi-disease Heart Sound (BMD-HS) dataset - a comprehensive and meticulously curated collection of heart sound recordings. This dataset, encompassing 864 recordings across five distinct classes of common heart sounds, represents a broad spectrum of valvular heart diseases, with a focus on diagnostically challenging cases. The standout feature of the BMD-HS dataset is its innovative multi-label annotation system, which captures a diverse range of diseases and unique disease states. This system significantly enhances the dataset's utility for developing advanced machine learning models in automated heart sound classification and diagnosis. By bridging the gap between traditional auscultation practices and contemporary data-driven diagnostic methods, the BMD-HS dataset is poised to revolutionize CVD diagnosis and management, providing an invaluable resource for the advancement of cardiac health research. The dataset is publicly available at this link: https://github.com/mHealthBuet/BMD-HS-Dataset.

eess.SP

Improving Pediatric Pneumonia Diagnosis with Adult Chest X-ray Images Utilizing Contrastive Learning and Embedding Similarity

Despite the advancement of deep learning-based computer-aided diagnosis (CAD) methods for pneumonia from adult chest x-ray (CXR) images, the performance of CAD methods applied to pediatric images remains suboptimal, mainly due to the lack of large-scale annotated pediatric imaging datasets. Establishing a proper framework to leverage existing adult large-scale CXR datasets can thus enhance pediatric pneumonia detection performance. In this paper, we propose a three-branch parallel path learning-based framework that utilizes both adult and pediatric datasets to improve the performance of deep learning models on pediatric test datasets. The paths are trained with pediatric only, adult only, and both types of CXRs, respectively. Our proposed framework utilizes the multi-positive contrastive loss to cluster the classwise embeddings and the embedding similarity loss among these three parallel paths to make the classwise embeddings as close as possible to reduce the effect of domain shift. Experimental evaluations on open-access adult and pediatric CXR datasets show that the proposed method achieves a superior AUROC score of 0.8464 compared to 0.8348 obtained using the conventional approach of join training on both datasets. The proposed approach thus paves the way for generalized CAD models that are effective for both adult and pediatric age groups.

eess.IV

Learning to Generalize towards Unseen Domains via a Content-Aware Style Invariant Model for Disease Detection from Chest X-rays

Performance degradation due to distribution discrepancy is a longstanding challenge in intelligent imaging, particularly for chest X-rays (CXRs). Recent studies have demonstrated that CNNs are biased toward styles (e.g., uninformative textures) rather than content (e.g., shape), in stark contrast to the human vision system. Radiologists tend to learn visual cues from CXRs and thus perform well across multiple domains. Motivated by this, we employ the novel on-the-fly style randomization modules at both image (SRM-IL) and feature (SRM-FL) levels to create rich style perturbed features while keeping the content intact for robust cross-domain performance. Previous methods simulate unseen domains by constructing new styles via interpolation or swapping styles from existing data, limiting them to available source domains during training. However, SRM-IL samples the style statistics from the possible value range of a CXR image instead of the training data to achieve more diversified augmentations. Moreover, we utilize pixel-wise learnable parameters in the SRM-FL compared to pre-defined channel-wise mean and standard deviations as style embeddings for capturing more representative style features. Additionally, we leverage consistency regularizations on global semantic features and predictive distributions from with and without style-perturbed versions of the same CXR to tweak the model's sensitivity toward content markers for accurate predictions. Our proposed method, trained on CheXpert and MIMIC-CXR datasets, achieves 77.32$\pm$0.35, 88.38$\pm$0.19, 82.63$\pm$0.13 AUCs(%) on the unseen domain test datasets, i.e., BRAX, VinDr-CXR, and NIH chest X-ray14, respectively, compared to 75.56$\pm$0.80, 87.57$\pm$0.46, 82.07$\pm$0.19 from state-of-the-art models on five-fold cross-validation with statistically significant results in thoracic disease classification.

cs.CV

ThoraX-PriorNet: A Novel Attention-Based Architecture Using Anatomical Prior Probability Maps for Thoracic Disease Classification

Objective: Computer-aided disease diagnosis and prognosis based on medical images is a rapidly emerging field. Many Convolutional Neural Network (CNN) architectures have been developed by researchers for disease classification and localization from chest X-ray images. It is known that different thoracic disease lesions are more likely to occur in specific anatomical regions compared to others. This article aims to incorporate this disease and region-dependent prior probability distribution within a deep learning framework. Methods: We present the ThoraX-PriorNet, a novel attention-based CNN model for thoracic disease classification. We first estimate a disease-dependent spatial probability, i.e., an anatomical prior, that indicates the probability of occurrence of a disease in a specific region in a chest X-ray image. Next, we develop a novel attention-based classification model that combines information from the estimated anatomical prior and automatically extracted chest region of interest (ROI) masks to provide attention to the feature maps generated from a deep convolution network. Unlike previous works that utilize various self-attention mechanisms, the proposed method leverages the extracted chest ROI masks along with the probabilistic anatomical prior information, which selects the region of interest for different diseases to provide attention. Results: The proposed method shows superior performance in disease classification on the NIH ChestX-ray14 dataset compared to existing state-of-the-art methods while reaching an area under the ROC curve (%AUC) of 84.67. Regarding disease localization, the anatomy prior attention method shows competitive performance compared to state-of-the-art methods, achieving an accuracy of 0.80, 0.63, 0.49, 0.33, 0.28, 0.21, and 0.04 with an Intersection over Union (IoU) threshold of 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, and 0.7, respectively.

eess.IV

A Web-based Mpox Skin Lesion Detection System Using State-of-the-art Deep Learning Models Considering Racial Diversity

The recent 'Mpox' outbreak, formerly known as 'Monkeypox', has become a significant public health concern and has spread to over 110 countries globally. The challenge of clinically diagnosing mpox early on is due, in part, to its similarity to other types of rashes. Computer-aided screening tools have been proven valuable in cases where Polymerase Chain Reaction (PCR) based diagnosis is not immediately available. Deep learning methods are powerful in learning complex data representations, but their efficacy largely depends on adequate training data. To address this challenge, we present the "Mpox Skin Lesion Dataset Version 2.0 (MSLD v2.0)" as a follow-up to the previously released openly accessible dataset, one of the first datasets containing mpox lesion images. This dataset contains images of patients with mpox and five other non-mpox classes (chickenpox, measles, hand-foot-mouth disease, cowpox, and healthy). We benchmark the performance of several state-of-the-art deep learning models, including VGG16, ResNet50, DenseNet121, MobileNetV2, EfficientNetB3, InceptionV3, and Xception, to classify mpox and other infectious skin diseases. In order to reduce the impact of racial bias, we utilize a color space data augmentation method to increase skin color variability during training. Additionally, by leveraging transfer learning implemented with pre-trained weights generated from the HAM10000 dataset, an extensive collection of pigmented skin lesion images, we achieved the best overall accuracy of $83.59\pm2.11\%$. Finally, the developed models are incorporated within a prototype web application to analyze uploaded skin images by a user and determine whether a subject is a suspected mpox patient.

cs.CV

SpectNet : End-to-End Audio Signal Classification Using Learnable Spectrograms

Pattern recognition from audio signals is an active research topic encompassing audio tagging, acoustic scene classification, music classification, and other areas. Spectrogram and mel-frequency cepstral coefficients (MFCC) are among the most commonly used features for audio signal analysis and classification. Recently, deep convolutional neural networks (CNN) have been successfully used for audio classification problems using spectrogram-based 2D features. In this paper, we present SpectNet, an integrated front-end layer that extracts spectrogram features within a CNN architecture that can be used for audio pattern recognition tasks. The front-end layer utilizes learnable gammatone filters that are initialized using mel-scale filters. The proposed layer outputs a 2D spectrogram image which can be fed into a 2D CNN for classification. The parameters of the entire network, including the front-end filterbank, can be updated via back-propagation. This training scheme allows for fine-tuning the spectrogram-image features according to the target audio dataset. The proposed method is evaluated in two different audio signal classification tasks: heart sound anomaly detection and acoustic scene classification. The proposed method shows a significant 1.02\% improvement in MACC for the heart sound classification task and 2.11\% improvement in accuracy for the acoustic scene classification task compared to the classical spectrogram image features. The source code of our experiments can be found at \url{https://github.com/mHealthBuet/SpectNet}

eess.AS

BON: An extended public domain dataset for human activity recognition

Body-worn first-person vision (FPV) camera enables to extract a rich source of information on the environment from the subject's viewpoint. However, the research progress in wearable camera-based egocentric office activity understanding is slow compared to other activity environments (e.g., kitchen and outdoor ambulatory), mainly due to the lack of adequate datasets to train more sophisticated (e.g., deep learning) models for human activity recognition in office environments. This paper provides details of a large and publicly available office activity dataset (BON) collected in different office settings across three geographical locations: Barcelona (Spain), Oxford (UK) and Nairobi (Kenya), using a chest-mounted GoPro Hero camera. The BON dataset contains eighteen common office activities that can be categorised into person-to-person interactions (e.g., Chat with colleagues), person-to-object (e.g., Writing on a whiteboard), and proprioceptive (e.g., Walking). Annotation is provided for each segment of video with 5-seconds duration. Generally, BON contains 25 subjects and 2639 total segments. In order to facilitate further research in the sub-domain, we have also provided results that could be used as baselines for future studies.

cs.CV

Anatomy-XNet: An Anatomy Aware Convolutional Neural Network for Thoracic Disease Classification in Chest X-rays

Thoracic disease detection from chest radiographs using deep learning methods has been an active area of research in the last decade. Most previous methods attempt to focus on the diseased organs of the image by identifying spatial regions responsible for significant contributions to the model's prediction. In contrast, expert radiologists first locate the prominent anatomical structures before determining if those regions are anomalous. Therefore, integrating anatomical knowledge within deep learning models could bring substantial improvement in automatic disease classification. Motivated by this, we propose Anatomy-XNet, an anatomy-aware attention-based thoracic disease classification network that prioritizes the spatial features guided by the pre-identified anatomy regions. We adopt a semi-supervised learning method by utilizing available small-scale organ-level annotations to locate the anatomy regions in large-scale datasets where the organ-level annotations are absent. The proposed Anatomy-XNet uses the pre-trained DenseNet-121 as the backbone network with two corresponding structured modules, the Anatomy Aware Attention (A$^3$) and Probabilistic Weighted Average Pooling (PWAP), in a cohesive framework for anatomical attention learning. We experimentally show that our proposed method sets a new state-of-the-art benchmark by achieving an AUC score of 85.78%, 92.07%, and, 84.04% on three publicly available large-scale CXR datasets--NIH, Stanford CheXpert, and MIMIC-CXR, respectively. This not only proves the efficacy of utilizing the anatomy segmentation knowledge to improve the thoracic disease classification but also demonstrates the generalizability of the proposed framework.

eess.IV

Monkeypox Skin Lesion Detection Using Deep Learning Models: A Feasibility Study

The recent monkeypox outbreak has become a public health concern due to its rapid spread in more than 40 countries outside Africa. Clinical diagnosis of monkeypox in an early stage is challenging due to its similarity with chickenpox and measles. In cases where the confirmatory Polymerase Chain Reaction (PCR) tests are not readily available, computer-assisted detection of monkeypox lesions could be beneficial for surveillance and rapid identification of suspected cases. Deep learning methods have been found effective in the automated detection of skin lesions, provided that sufficient training examples are available. However, as of now, such datasets are not available for the monkeypox disease. In the current study, we first develop the ``Monkeypox Skin Lesion Dataset (MSLD)" consisting skin lesion images of monkeypox, chickenpox, and measles. The images are mainly collected from websites, news portals, and publicly accessible case reports. Data augmentation is used to increase the sample size, and a 3-fold cross-validation experiment is set up. In the next step, several pre-trained deep learning models, namely, VGG-16, ResNet50, and InceptionV3 are employed to classify monkeypox and other diseases. An ensemble of the three models is also developed. ResNet50 achieves the best overall accuracy of $82.96(\pm4.57\%)$, while VGG16 and the ensemble system achieved accuracies of $81.48(\pm6.87\%)$ and $79.26(\pm1.05\%)$, respectively. A prototype web-application is also developed as an online monkeypox screening tool. While the initial results on this limited dataset are promising, a larger demographically diverse dataset is required to further enhance the generalizability of these models.

cs.CV

Heart Sound Classification Considering Additive Noise and Convolutional Distortion

Cardiac auscultation is an essential point-of-care method used for the early diagnosis of heart diseases. Automatic analysis of heart sounds for abnormality detection is faced with the challenges of additive noise and sensor-dependent degradation. This paper aims to develop methods to address the cardiac abnormality detection problem when both types of distortions are present in the cardiac auscultation sound. We first mathematically analyze the effect of additive and convolutional noise on short-term filterbank-based features and a Convolutional Neural Network (CNN) layer. Based on the analysis, we propose a combination of linear and logarithmic spectrogram-image features. These 2D features are provided as input to a residual CNN network (ResNet) for heart sound abnormality detection. Experimental validation is performed on an open-access heart sound abnormality detection dataset involving noisy recordings obtained from multiple stethoscope sensors. The proposed method achieves significantly improved results compared to the conventional approaches, with an area under the ROC (receiver operating characteristics) curve (AUC) of 91.36%, F-1 score of 84.09%, and Macc (mean of sensitivity and specificity) of 85.08%. We also show that the proposed method shows the best mean accuracy across different source domains including stethoscope and noise variability, demonstrating its effectiveness in different recording conditions. The proposed combination of linear and logarithmic features along with the ResNet classifier effectively minimizes the impact of background noise and sensor variability for classifying phonocardiogram (PCG) signals. The proposed method paves the way towards developing computer-aided cardiac auscultation systems in noisy environments using low-cost stethoscopes.

cs.SD

OxyJet: Design and Evaluation of A Low-Cost Precision Venturi Based Continuous Positive Airway Pressure (CPAP) System

The Covid-19 pandemic has strained the hospital systems in many countries in the world, especially in developing countries. In many low-resource hospitals, severely ill hypoxemic Covid-19 patients are treated with various forms of low-flow oxygen therapy (0-15 L/min), including interfaces such as a nasal cannula, Hudson mask, venturi-mask, and non-rebreather masks. When 15L/min of pure oxygen flow is not sufficient for the patient, treatment guidelines suggest non-invasive positive pressure ventilation (NIPPV) or high-flow nasal oxygenation (HFNO) as the next stage of treatment. However, administering HFNO in the general wards of a low-resource hospital is difficult due to several factors, including difficulty in operation, unavailability of electric power outlets, and frequent maintenance. Therefore, in many cases, the highest level of care a patient receives in the general ward is 15L/min of oxygen on a Non-Rebreather Mask. With a shortage of Intensive Care Unit (ICU) beds, this is a major problem since intermediate forms of treatments are simply not available at an affordable cost. To address this gap, we have developed a low-cost CPAP system specifically designed for low-resource hospitals. The device is a precision venturi-based flow-generator capable of providing up to 60L/min of flow. The device utilizes the mechanics of a jet pump driven by high-pressure oxygen to increase the volumetric flow rate by entraining atmospheric air. The fraction of inspired oxygen (FiO2) can be attained between 40 - 100% using a dual-flowmeter. Consisting of a traditional 22mm breathing circuit, a non-vented CPAP mask, and a Positive End-Expiratory Pressure (PEEP) valve, the CPAP can provide positive pressures between 5-20 cm H2O. The device is manufactured using local 3D printing and workshop facilities.

physics.med-ph