arXiv subjects

Taufiq Hasan

Publications and source records attributed to Taufiq Hasan.

28 records · Page 2Linked to original sources

arXiv2021

OxyJet: Design and Evaluation of A Low-Cost Precision Venturi Based Continuous Positive Airway Pressure (CPAP) System

The Covid-19 pandemic has strained the hospital systems in many countries in the world, especially in developing countries. In many low-resource hospitals, severely ill hypoxemic Covid-19 patients are treated with various forms of low-flow oxygen therapy (0-15 L/min), including interfaces such as a nasal cannula, Hudson mask, venturi-mask, and non-rebreather masks. When 15L/min of pure oxygen flow is not sufficient for the patient, treatment guidelines suggest non-invasive positive pressure ventilation (NIPPV) or high-flow nasal oxygenation (HFNO) as the next stage of treatment. However, administering HFNO in the general wards of a low-resource hospital is difficult due to several factors, including difficulty in operation, unavailability of electric power outlets, and frequent maintenance. Therefore, in many cases, the highest level of care a patient receives in the general ward is 15L/min of oxygen on a Non-Rebreather Mask. With a shortage of Intensive Care Unit (ICU) beds, this is a major problem since intermediate forms of treatments are simply not available at an affordable cost. To address this gap, we have developed a low-cost CPAP system specifically designed for low-resource hospitals. The device is a precision venturi-based flow-generator capable of providing up to 60L/min of flow. The device utilizes the mechanics of a jet pump driven by high-pressure oxygen to increase the volumetric flow rate by entraining atmospheric air. The fraction of inspired oxygen (FiO2) can be attained between 40 - 100% using a dual-flowmeter. Consisting of a traditional 22mm breathing circuit, a non-vented CPAP mask, and a Positive End-Expiratory Pressure (PEEP) valve, the CPAP can provide positive pressures between 5-20 cm H2O. The device is manufactured using local 3D printing and workshop facilities.

physics.med-ph↗

arXiv2020

Respiratory Distress Detection from Telephone Speech using Acoustic and Prosodic Features

With the widespread use of telemedicine services, automatic assessment of health conditions via telephone speech can significantly impact public health. This work summarizes our preliminary findings on automatic detection of respiratory distress using well-known acoustic and prosodic features. Speech samples are collected from de-identified telemedicine phonecalls from a healthcare provider in Bangladesh. The recordings include conversational speech samples of patients talking to doctors showing mild or severe respiratory distress or asthma symptoms. We hypothesize that respiratory distress may alter speech features such as voice quality, speaking pattern, loudness, and speech-pause duration. To capture these variations, we utilize a set of well-known acoustic and prosodic features with a Support Vector Machine (SVM) classifier for detecting the presence of respiratory distress. Experimental evaluations are performed using a 3-fold cross-validation scheme, ensuring patient-independent data splits. We obtained an overall accuracy of 86.4\% in detecting respiratory distress from the speech recordings using the acoustic feature set. Correlation analysis reveals that the top-performing features include loudness, voice rate, voice duration, and pause duration.

eess.AS↗

arXiv2020

Towards Domain Invariant Heart Sound Abnormality Detection using Learnable Filterbanks

Cardiac auscultation is the most practiced non-invasive and cost-effective procedure for the early diagnosis of heart diseases. While machine learning based systems can aid in automatically screening patients, the robustness of these systems is affected by numerous factors including the stethoscope/sensor, environment, and data collection protocol. This paper studies the adverse effect of domain variability on heart sound abnormality detection and develops strategies to address this problem. Methods: We propose a novel Convolutional Neural Network (CNN) layer, consisting of time-convolutional (tConv) units, that emulate Finite Impulse Response (FIR) filters. The filter coefficients can be updated via backpropagation and be stacked in the front-end of the network as a learnable filterbank. Results: On publicly available multi-domain datasets, the proposed method surpasses the top-scoring systems found in the literature for heart sound abnormality detection (a binary classification task). We utilized sensitivity, specificity, F-1 score and Macc (average of sensitivity and specificity) as performance metrics. Our systems achieved relative improvements of up to 11.84% in terms of MAcc, compared to state-of-the-art methods. Conclusion: The results demonstrate the effectiveness of the proposed learnable filterbank CNN architecture in achieving robustness towards sensor/domain variability in PCG signals. Significance: The proposed methods pave the way for deploying automated cardiac screening systems in diversified and underserved communities.

eess.SP↗

arXiv2020

A Lightweight CNN Model for Detecting Respiratory Diseases from Lung Auscultation Sounds using EMD-CWT-based Hybrid Scalogram

Listening to lung sounds through auscultation is vital in examining the respiratory system for abnormalities. Automated analysis of lung auscultation sounds can be beneficial to the health systems in low-resource settings where there is a lack of skilled physicians. In this work, we propose a lightweight convolutional neural network (CNN) architecture to classify respiratory diseases using hybrid scalogram-based features of lung sounds. The hybrid scalogram features utilize the empirical mode decomposition (EMD) and continuous wavelet transform (CWT). The proposed scheme's performance is studied using a patient independent train-validation set from the publicly available ICBHI 2017 lung sound dataset. Employing the proposed framework, weighted accuracy scores of 99.20% for ternary chronic classification and 99.05% for six-class pathological classification are achieved, which outperform well-known and much larger VGG16 in terms of accuracy by 0.52% and 1.77% respectively. The proposed CNN model also outperforms other contemporary lightweight models while being computationally comparable.

eess.SP↗

arXiv2020

SegCodeNet: Color-Coded Segmentation Masks for Activity Detection from Wearable Cameras

Activity detection from first-person videos (FPV) captured using a wearable camera is an active research field with potential applications in many sectors, including healthcare, law enforcement, and rehabilitation. State-of-the-art methods use optical flow-based hybrid techniques that rely on features derived from the motion of objects from consecutive frames. In this work, we developed a two-stream network, the \emph{SegCodeNet}, that uses a network branch containing video-streams with color-coded semantic segmentation masks of relevant objects in addition to the original RGB video-stream. We also include a stream-wise attention gating that prioritizes between the two streams and a frame-wise attention module that prioritizes the video frames that contain relevant features. Experiments are conducted on an FPV dataset containing $18$ activity classes in office environments. In comparison to a single-stream network, the proposed two-stream method achieves an absolute improvement of $14.366\%$ and $10.324\%$ for averaged F1 score and accuracy, respectively, when average results are compared for three different frame sizes $224\times224$, $112\times112$, and $64\times64$. The proposed method provides significant performance gains for lower-resolution images with absolute improvements of $17\%$ and $26\%$ in F1 score for input dimensions of $112\times112$ and $64\times64$, respectively. The best performance is achieved for a frame size of $224\times224$ yielding an F1 score and accuracy of $90.176\%$ and $90.799\%$ which outperforms the state-of-the-art Inflated 3D ConvNet (I3D) \cite{carreira2017quo} method by an absolute margin of $4.529\%$ and $2.419\%$, respectively.

cs.CV↗

arXiv2020

Privacy-Aware Activity Classification from First Person Office Videos

In the advent of wearable body-cameras, human activity classification from First-Person Videos (FPV) has become a topic of increasing importance for various applications, including in life-logging, law-enforcement, sports, workplace, and healthcare. One of the challenging aspects of FPV is its exposure to potentially sensitive objects within the user's field of view. In this work, we developed a privacy-aware activity classification system focusing on office videos. We utilized a Mask-RCNN with an Inception-ResNet hybrid as a feature extractor for detecting, and then blurring out sensitive objects (e.g., digital screens, human face, paper) from the videos. For activity classification, we incorporate an ensemble of Recurrent Neural Networks (RNNs) with ResNet, ResNext, and DenseNet based feature extractors. The proposed system was trained and evaluated on the FPV office video dataset that includes 18-classes made available through the IEEE Video and Image Processing (VIP) Cup 2019 competition. On the original unprotected FPVs, the proposed activity classifier ensemble reached an accuracy of 85.078% with precision, recall, and F1 scores of 0.88, 0.85 & 0.86, respectively. On privacy protected videos, the performances were slightly degraded, with accuracy, precision, recall, and F1 scores at 73.68%, 0.79, 0.75, and 0.74, respectively. The presented system won the 3rd prize in the IEEE VIP Cup 2019 competition.

cs.CV↗

arXiv2019

X-Ray Image Compression Using Convolutional Recurrent Neural Networks

In the advent of a digital health revolution, vast amounts of clinical data are being generated, stored and processed on a daily basis. This has made the storage and retrieval of large volumes of health-care data, especially, high-resolution medical images, particularly challenging. Effective image compression for medical images thus plays a vital role in today's healthcare information system, particularly in teleradiology. In this work, an X-ray image compression method based on a Convolutional Recurrent Neural Networks RNN-Conv is presented. The proposed architecture can provide variable compression rates during deployment while it requires each network to be trained only once for a specific dimension of X-ray images. The model uses a multi-level pooling scheme that learns contextualized features for effective compression. We perform our image compression experiments on the National Institute of Health (NIH) ChestX-ray8 dataset and compare the performance of the proposed architecture with a state-of-the-art RNN based technique and JPEG 2000. The experimental results depict improved compression performance achieved by the proposed method in terms of Structural Similarity Index (SSIM) and Peak Signal-to-Noise Ratio (PSNR) metrics. To the best of our knowledge, this is the first reported evaluation on using a deep convolutional RNN for medical image compression.

cs.CV↗

arXiv2019

End-to-end Sleep Staging with Raw Single Channel EEG using Deep Residual ConvNets

Humans approximately spend a third of their life sleeping, which makes monitoring sleep an integral part of well-being. In this paper, a 34-layer deep residual ConvNet architecture for end-to-end sleep staging is proposed. The network takes raw single channel electroencephalogram (Fpz-Cz) signal as input and yields hypnogram annotations for each 30s segments as output. Experiments are carried out for two different scoring standards (5 and 6 stage classification) on the expanded PhysioNet Sleep-EDF dataset, which contains multi-source data from hospital and household polysomnography setups. The performance of the proposed network is compared with that of the state-of-the-art algorithms in patient independent validation tasks. The experimental results demonstrate the superiority of the proposed network compared to the best existing method, providing a relative improvement in epoch-wise average accuracy of 6.8% and 6.3% on the household data and multi-source data, respectively. Codes are made publicly available on Github.

cs.LG↗

arXiv2018

An Ensemble of Transfer, Semi-supervised and Supervised Learning Methods for Pathological Heart Sound Classification

In this work, we propose an ensemble of classifiers to distinguish between various degrees of abnormalities of the heart using Phonocardiogram (PCG) signals acquired using digital stethoscopes in a clinical setting, for the INTERSPEECH 2018 Computational Paralinguistics (ComParE) Heart Beats SubChallenge. Our primary classification framework constitutes a convolutional neural network with 1D-CNN time-convolution (tConv) layers, which uses features transferred from a model trained on the 2016 Physionet Heart Sound Database. We also employ a Representation Learning (RL) approach to generate features in an unsupervised manner using Deep Recurrent Autoencoders and use Support Vector Machine (SVM) and Linear Discriminant Analysis (LDA) classifiers. Finally, we utilize an SVM classifier on a high-dimensional segment-level feature extracted using various functionals on short-term acoustic features, i.e., Low-Level Descriptors (LLD). An ensemble of the three different approaches provides a relative improvement of 11.13% compared to our best single sub-system in terms of the Unweighted Average Recall (UAR) performance metric on the evaluation dataset.

cs.CV↗

arXiv2018

Learning Front-end Filter-bank Parameters using Convolutional Neural Networks for Abnormal Heart Sound Detection

Automatic heart sound abnormality detection can play a vital role in the early diagnosis of heart diseases, particularly in low-resource settings. The state-of-the-art algorithms for this task utilize a set of Finite Impulse Response (FIR) band-pass filters as a front-end followed by a Convolutional Neural Network (CNN) model. In this work, we propound a novel CNN architecture that integrates the front-end bandpass filters within the network using time-convolution (tConv) layers, which enables the FIR filter-bank parameters to become learnable. Different initialization strategies for the learnable filters, including random parameters and a set of predefined FIR filter-bank coefficients, are examined. Using the proposed tConv layers, we add constraints to the learnable FIR filters to ensure linear and zero phase responses. Experimental evaluations are performed on a balanced 4-fold cross-validation task prepared using the PhysioNet/CinC 2016 dataset. Results demonstrate that the proposed models yield superior performance compared to the state-of-the-art system, while the linear phase FIR filterbank method provides an absolute improvement of 9.54% over the baseline in terms of an overall accuracy metric.

cs.CV↗