arXiv subjects

Tianlong Chen

Publications and source records attributed to Tianlong Chen.

At least 163 records · Page 9Linked to original sources

arXiv2025

Knowledge-Driven Feature Selection and Engineering for Genotype Data with Large Language Models

Predicting phenotypes with complex genetic bases based on a small, interpretable set of variant features remains a challenging task. Conventionally, data-driven approaches are utilized for this task, yet the high dimensional nature of genotype data makes the analysis and prediction difficult. Motivated by the extensive knowledge encoded in pre-trained LLMs and their success in processing complex biomedical concepts, we set to examine the ability of LLMs in feature selection and engineering for tabular genotype data, with a novel knowledge-driven framework. We develop FREEFORM, Free-flow Reasoning and Ensembling for Enhanced Feature Output and Robust Modeling, designed with chain-of-thought and ensembling principles, to select and engineer features with the intrinsic knowledge of LLMs. Evaluated on two distinct genotype-phenotype datasets, genetic ancestry and hereditary hearing loss, we find this framework outperforms several data-driven methods, particularly on low-shot regimes. FREEFORM is available as open-source framework at GitHub: https://github.com/PennShenLab/FREEFORM.

cs.LG↗

arXiv2025

Leveraging Social Determinants of Health in Alzheimer's Research Using LLM-Augmented Literature Mining and Knowledge Graphs

Growing evidence suggests that social determinants of health (SDoH), a set of nonmedical factors, affect individuals' risks of developing Alzheimer's disease (AD) and related dementias. Nevertheless, the etiological mechanisms underlying such relationships remain largely unclear, mainly due to difficulties in collecting relevant information. This study presents a novel, automated framework that leverages recent advancements of large language model (LLM) and natural language processing techniques to mine SDoH knowledge from extensive literature and integrate it with AD-related biological entities extracted from the general-purpose knowledge graph PrimeKG. Utilizing graph neural networks, we performed link prediction tasks to evaluate the resultant SDoH-augmented knowledge graph. Our framework shows promise for enhancing knowledge discovery in AD and can be generalized to other SDoH-related research areas, offering a new tool for exploring the impact of social determinants on health outcomes. Our code is available at: https://github.com/hwq0726/SDoHenPKG

cs.AI↗

arXiv2025

Glider: Global and Local Instruction-Driven Expert Router

The availability of performant pre-trained models has led to a proliferation of fine-tuned expert models that are specialized to particular domains. This has enabled the creation of powerful and adaptive routing-based "Model MoErging" methods with the goal of using expert modules to create an aggregate system with improved performance or generalization. However, existing MoErging methods often prioritize generalization to unseen tasks at the expense of performance on held-in tasks, which limits its practical applicability in real-world deployment scenarios. We observe that current token-level routing mechanisms neglect the global semantic context of the input task. This token-wise independence hinders effective expert selection for held-in tasks, as routing decisions fail to incorporate the semantic properties of the task. To address this, we propose, Global and Local Instruction Driven Expert Router (GLIDER) that integrates a multi-scale routing mechanism, encompassing a semantic global router and a learned local router. The global router leverages LLM's advanced reasoning capabilities for semantic-related contexts to enhance expert selection. Given the input query and LLM, the router generates semantic task instructions that guide the retrieval of the most relevant experts across all layers. This global guidance is complemented by a local router that facilitates token-level routing decisions within each module, enabling finer control and enhanced performance on unseen tasks. Our experiments using T5-based models for T0 and FLAN tasks demonstrate that GLIDER achieves substantially improved held-in performance while maintaining strong generalization on held-out tasks. We also perform ablations experiments to dive deeper into the components of GLIDER. Our experiments highlight the importance of our multi-scale routing that leverages LLM-driven semantic reasoning for MoErging methods.

cs.LG↗

arXiv2025

Are We Merely Justifying Results ex Post Facto? Quantifying Explanatory Inversion in Post-Hoc Model Explanations

Post-hoc explanation methods provide interpretation by attributing predictions to input features. Natural explanations are expected to interpret how the inputs lead to the predictions. Thus, a fundamental question arises: Do these explanations unintentionally reverse the natural relationship between inputs and outputs? Specifically, are the explanations rationalizing predictions from the output rather than reflecting the true decision process? To investigate such explanatory inversion, we propose Inversion Quantification (IQ), a framework that quantifies the degree to which explanations rely on outputs and deviate from faithful input-output relationships. Using the framework, we demonstrate on synthetic datasets that widely used methods such as LIME and SHAP are prone to such inversion, particularly in the presence of spurious correlations, across tabular, image, and text domains. Finally, we propose Reproduce-by-Poking (RBP), a simple and model-agnostic enhancement to post-hoc explanation methods that integrates forward perturbation checks. We further show that under the IQ framework, RBP theoretically guarantees the mitigation of explanatory inversion. Empirically, for example, on the synthesized data, RBP can reduce the inversion by 1.8% on average across iconic post-hoc explanation approaches and domains.

cs.LG↗

arXiv2025

Finding Fantastic Experts in MoEs: A Unified Study for Expert Dropping Strategies and Observations

Sparsely activated Mixture-of-Experts (SMoE) has shown promise in scaling up the learning capacity of neural networks. However, vanilla SMoEs have issues such as expert redundancy and heavy memory requirements, making them inefficient and non-scalable, especially for resource-constrained scenarios. Expert-level sparsification of SMoEs involves pruning the least important experts to address these limitations. In this work, we aim to address three questions: (1) What is the best recipe to identify the least knowledgeable subset of experts that can be dropped with minimal impact on performance? (2) How should we perform expert dropping (one-shot or iterative), and what correction measures can we undertake to minimize its drastic impact on SMoE subnetwork capabilities? (3) What capabilities of full-SMoEs are severely impacted by the removal of the least dominant experts, and how can we recover them? Firstly, we propose MoE Experts Compression Suite (MC-Suite), which is a collection of some previously explored and multiple novel recipes to provide a comprehensive benchmark for estimating expert importance from diverse perspectives, as well as unveil numerous valuable insights for SMoE experts. Secondly, unlike prior works with a one-shot expert pruning approach, we explore the benefits of iterative pruning with the re-estimation of the MC-Suite criterion. Moreover, we introduce the benefits of task-agnostic fine-tuning as a correction mechanism during iterative expert dropping, which we term MoE Lottery Subnetworks. Lastly, we present an experimentally validated conjecture that, during expert dropping, SMoEs' instruction-following capabilities are predominantly hurt, which can be restored to a robust level subject to external augmentation of instruction-following capabilities using k-shot examples and supervised fine-tuning.

cs.LG↗

arXiv2025

DLF: Disentangled-Language-Focused Multimodal Sentiment Analysis

Multimodal Sentiment Analysis (MSA) leverages heterogeneous modalities, such as language, vision, and audio, to enhance the understanding of human sentiment. While existing models often focus on extracting shared information across modalities or directly fusing heterogeneous modalities, such approaches can introduce redundancy and conflicts due to equal treatment of all modalities and the mutual transfer of information between modality pairs. To address these issues, we propose a Disentangled-Language-Focused (DLF) multimodal representation learning framework, which incorporates a feature disentanglement module to separate modality-shared and modality-specific information. To further reduce redundancy and enhance language-targeted features, four geometric measures are introduced to refine the disentanglement process. A Language-Focused Attractor (LFA) is further developed to strengthen language representation by leveraging complementary modality-specific information through a language-guided cross-attention mechanism. The framework also employs hierarchical predictions to improve overall accuracy. Extensive experiments on two popular MSA datasets, CMU-MOSI and CMU-MOSEI, demonstrate the significant performance gains achieved by the proposed DLF framework. Comprehensive ablation studies further validate the effectiveness of the feature disentanglement module, language-focused attractor, and hierarchical predictions. Our code is available at https://github.com/pwang322/DLF.

cs.LG↗

arXiv2025

ORAL: Prompting Your Large-Scale LoRAs via Conditional Recurrent Diffusion

Parameter generation has emerged as a novel paradigm for neural network development, offering an alternative to traditional neural network training by synthesizing high-quality model weights directly. In the context of Low-Rank Adaptation (LoRA) for evolving ($\textit{i.e.}$, constantly updated) large language models (LLMs), this approach promises efficient adaptation without costly retraining. However, existing methods face critical limitations in simultaneously achieving scalability and controllability. In this paper, we introduce $\texttt{ORAL}$, a novel $\textbf{conditional recurrent diffusion}$ framework that addresses these challenges. $\texttt{ORAL}$ incorporates a novel conditioning mechanism that integrates model architecture and textual task specifications, enabling the generation of task-specific LoRA parameters that can seamlessly transfer across evolving foundation models. Our approach successfully scales to billions-of-parameter LLMs and maintains controllability. Through extensive experiments across seven language tasks, four vision tasks, and three multimodal tasks using five pre-trained LLMs, we demonstrate that $\texttt{ORAL}$ generates high-quality LoRA parameters that achieve comparable or superior performance to vanilla trained counterparts.

cs.LG↗

arXiv2025

Window Token Concatenation for Efficient Visual Large Language Models

To effectively reduce the visual tokens in Visual Large Language Models (VLLMs), we propose a novel approach called Window Token Concatenation (WiCo). Specifically, we employ a sliding window to concatenate spatially adjacent visual tokens. However, directly concatenating these tokens may group diverse tokens into one, and thus obscure some fine details. To address this challenge, we propose fine-tuning the last few layers of the vision encoder to adaptively adjust the visual tokens, encouraging that those within the same window exhibit similar features. To further enhance the performance on fine-grained visual understanding tasks, we introduce WiCo+, which decomposes the visual tokens in later layers of the LLM. Such a design enjoys the merits of the large perception field of the LLM for fine-grained visual understanding while keeping a small number of visual tokens for efficient inference. We perform extensive experiments on both coarse- and fine-grained visual understanding tasks based on LLaVA-1.5 and Shikra, showing better performance compared with existing token reduction projectors. The code is available: https://github.com/JackYFL/WiCo.

cs.CV↗

arXiv2025

Hexa-MoE: Efficient and Heterogeneous-aware Training for Mixture-of-Experts

Mixture-of-Experts (MoE) has emerged as a practical approach to scale up parameters for the Transformer model to achieve better generalization while maintaining a sub-linear increase in computation overhead. Current MoE models are mainly built with expert parallelism on distributed devices. However, it usually depends on homogeneous devices to deploy and suffers from heavy communication overhead and computation redundancy. In this paper, we explore developing a \texttt{H}eterogeneous-aware \texttt{EX}pert \texttt{A}llocation framework, \textbf{\texttt{HEXA-MoE}}, with significantly enhanced computing efficiency. It contains two components: ($1$) \textit{Expert-Specific Operators}. We replace the typical general matrix multiplication or grouped matrix multiplication interfaces with our operators, which allows the computing to be performed in an in-place manner with \textbf{ZERO} redundancy. ($2$) \textit{Adaptive Data- and Model-Centric Configurations} for different workload scales. Specifically, we introduce a pipeline-shared cache on each device to tackle the heavy memory consumption in the existing data-centric MoE library. Comprehensive experiments on the Swin-MoE benchmark consistently reveal the effectiveness of our \texttt{HEXA-MoE} framework, i.e., reducing $10\%\sim48\%$ memory consumption and achieving $0.5\sim4.3\times$ speed up compared to current state-of-the-art MoE libraries. Furthermore, we examine our \texttt{HEXA-MoE} with heterogeneous devices for both data- and model-centric settings. Promising results show that employing optimal parallel configuration with \texttt{HEXA-MoE} on heterogeneous devices can substantially minimize overall latency. Codes are available at https://github.com/UNITES-Lab/HEXA-MoE.

cs.DC↗

arXiv2025

PortLLM: Personalizing Evolving Large Language Models with Training-Free and Portable Model Patches

As large language models (LLMs) increasingly shape the AI landscape, fine-tuning pretrained models has become more popular than in the pre-LLM era for achieving optimal performance in domain-specific tasks. However, pretrained LLMs such as ChatGPT are periodically evolved, i.e., model parameters are frequently updated), making it challenging for downstream users with limited resources to keep up with fine-tuning the newest LLMs for their domain application. Even though fine-tuning costs have nowadays been reduced thanks to the innovations of parameter-efficient fine-tuning such as LoRA, not all downstream users have adequate computing for frequent personalization. Moreover, access to fine-tuning datasets, particularly in sensitive domains such as healthcare, could be time-restrictive, making it crucial to retain the knowledge encoded in earlier fine-tuned rounds for future adaptation. In this paper, we present PortLLM, a training-free framework that (i) creates an initial lightweight model update patch to capture domain-specific knowledge, and (ii) allows a subsequent seamless plugging for the continual personalization of evolved LLM at minimal cost. Our extensive experiments cover seven representative datasets, from easier question-answering tasks {BoolQ, SST2} to harder reasoning tasks {WinoGrande, GSM8K}, and models including {Mistral-7B, Llama2, Llama3.1, and Gemma2}, validating the portability of our designed model patches and showcasing the effectiveness of our proposed framework. For instance, PortLLM achieves comparable performance to LoRA fine-tuning with reductions of up to 12.2x in GPU memory usage. Finally, we provide theoretical justifications to understand the portability of our model update patches, which offers new insights into the theoretical dimension of LLMs' personalization.

cs.CL↗

arXiv2025

DANCE: DAta-Network Co-optimization for Efficient Segmentation Model Training and Inference

Semantic segmentation for scene understanding is nowadays widely demanded, raising significant challenges for the algorithm efficiency, especially its applications on resource-limited platforms. Current segmentation models are trained and evaluated on massive high-resolution scene images ("data level") and suffer from the expensive computation arising from the required multi-scale aggregation("network level"). In both folds, the computational and energy costs in training and inference are notable due to the often desired large input resolutions and heavy computational burden of segmentation models. To this end, we propose DANCE, general automated DAta-Network Co-optimization for Efficient segmentation model training and inference. Distinct from existing efficient segmentation approaches that focus merely on light-weight network design, DANCE distinguishes itself as an automated simultaneous data-network co-optimization via both input data manipulation and network architecture slimming. Specifically, DANCE integrates automated data slimming which adaptively downsamples/drops input images and controls their corresponding contribution to the training loss guided by the images' spatial complexity. Such a downsampling operation, in addition to slimming down the cost associated with the input size directly, also shrinks the dynamic range of input object and context scales, therefore motivating us to also adaptively slim the network to match the downsampled data. Extensive experiments and ablating studies (on four SOTA segmentation models with three popular segmentation datasets under two training settings) demonstrate that DANCE can achieve "all-win" towards efficient segmentation(reduced training cost, less expensive inference, and better mean Intersection-over-Union (mIoU)).

cs.CV↗

arXiv2025

Adapt-$\infty$: Scalable Continual Multimodal Instruction Tuning via Dynamic Data Selection

Visual instruction datasets from various distributors are released at different times and often contain a significant number of semantically redundant text-image pairs, depending on their task compositions (i.e., skills) or reference sources. This redundancy greatly limits the efficient deployment of continually adaptable multimodal large language models, hindering their ability to refine existing skills and acquire new competencies over time. We reframe the problem of lifelong Instruction Tuning (LiIT) via data selection, where the model automatically selects beneficial samples to learn from earlier and new datasets based on the current state of acquired knowledge in the model. We propose Adapt-$\infty$, a new multi-way and adaptive data selection approach that dynamically balances sample efficiency and effectiveness during LiIT. We first construct pseudo-skill clusters by grouping gradient-based sample vectors. Next, we select the best-performing data selector for each skill cluster from a pool of selector experts, including our newly proposed scoring function, Image Grounding score. This data selector samples a subset of the most important samples from each skill cluster for training. To prevent the continuous increase in the size of the dataset pool during LiIT, we introduce a cluster-wise permanent data pruning strategy to remove the most semantically redundant samples from each cluster, keeping computational requirements manageable. We validate the effectiveness and efficiency of Adapt-$\infty$ over a sequence of multimodal instruction tuning datasets with various tasks, including (Knowledge) VQA, multilingual, grounding, reasoning, language-only, and multi-image comprehension. Training with samples selected by Adapt-$\infty$ alleviates catastrophic forgetting, especially for rare tasks, and promotes forward transfer across the continuum using only a fraction of the original data.

cs.LG↗

arXiv2025

Composable Interventions for Language Models

Test-time interventions for language models can enhance factual accuracy, mitigate harmful outputs, and improve model efficiency without costly retraining. But despite a flood of new methods, different types of interventions are largely developing independently. In practice, multiple interventions must be applied sequentially to the same model, yet we lack standardized ways to study how interventions interact. We fill this gap by introducing composable interventions, a framework to study the effects of using multiple interventions on the same language models, featuring new metrics and a unified codebase. Using our framework, we conduct extensive experiments and compose popular methods from three emerging intervention categories -- Knowledge Editing, Model Compression, and Machine Unlearning. Our results from 310 different compositions uncover meaningful interactions: compression hinders editing and unlearning, composing interventions hinges on their order of application, and popular general-purpose metrics are inadequate for assessing composability. Taken together, our findings showcase clear gaps in composability, suggesting a need for new multi-objective interventions. All of our code is public: https://github.com/hartvigsen-group/composable-interventions.

cs.LG↗

arXiv2025

Make Optimization Once and for All with Fine-grained Guidance

Learning to Optimize (L2O) enhances optimization efficiency with integrated neural networks. L2O paradigms achieve great outcomes, e.g., refitting optimizer, generating unseen solutions iteratively or directly. However, conventional L2O methods require intricate design and rely on specific optimization processes, limiting scalability and generalization. Our analyses explore general framework for learning optimization, called Diff-L2O, focusing on augmenting sampled solutions from a wider view rather than local updates in real optimization process only. Meanwhile, we give the related generalization bound, showing that the sample diversity of Diff-L2O brings better performance. This bound can be simply applied to other fields, discussing diversity, mean-variance, and different tasks. Diff-L2O's strong compatibility is empirically verified with only minute-level training, comparing with other hour-levels.

cs.LG↗

arXiv2025

A Survey on Trustworthy LLM Agents: Threats and Countermeasures

With the rapid evolution of Large Language Models (LLMs), LLM-based agents and Multi-agent Systems (MAS) have significantly expanded the capabilities of LLM ecosystems. This evolution stems from empowering LLMs with additional modules such as memory, tools, environment, and even other agents. However, this advancement has also introduced more complex issues of trustworthiness, which previous research focused solely on LLMs could not cover. In this survey, we propose the TrustAgent framework, a comprehensive study on the trustworthiness of agents, characterized by modular taxonomy, multi-dimensional connotations, and technical implementation. By thoroughly investigating and summarizing newly emerged attacks, defenses, and evaluation methods for agents and MAS, we extend the concept of Trustworthy LLM to the emerging paradigm of Trustworthy Agent. In TrustAgent, we begin by deconstructing and introducing various components of the Agent and MAS. Then, we categorize their trustworthiness into intrinsic (brain, memory, and tool) and extrinsic (user, agent, and environment) aspects. Subsequently, we delineate the multifaceted meanings of trustworthiness and elaborate on the implementation techniques of existing research related to these internal and external modules. Finally, we present our insights and outlook on this domain, aiming to provide guidance for future endeavors.

cs.MA↗

arXiv2025

Proactive Privacy Amnesia for Large Language Models: Safeguarding PII with Negligible Impact on Model Utility

With the rise of large language models (LLMs), increasing research has recognized their risk of leaking personally identifiable information (PII) under malicious attacks. Although efforts have been made to protect PII in LLMs, existing methods struggle to balance privacy protection with maintaining model utility. In this paper, inspired by studies of amnesia in cognitive science, we propose a novel approach, Proactive Privacy Amnesia (PPA), to safeguard PII in LLMs while preserving their utility. This mechanism works by actively identifying and forgetting key memories most closely associated with PII in sequences, followed by a memory implanting using suitable substitute memories to maintain the LLM's functionality. We conduct evaluations across multiple models to protect common PII, such as phone numbers and physical addresses, against prevalent PII-targeted attacks, demonstrating the superiority of our method compared with other existing defensive techniques. The results show that our PPA method completely eliminates the risk of phone number exposure by 100% and significantly reduces the risk of physical address exposure by 9.8% - 87.6%, all while maintaining comparable model utility performance.

cs.CL↗

arXiv2025

You Only Debias Once: Towards Flexible Accuracy-Fairness Trade-offs at Inference Time

Deep neural networks are prone to various bias issues, jeopardizing their applications for high-stake decision-making. Existing fairness methods typically offer a fixed accuracy-fairness trade-off, since the weight of the well-trained model is a fixed point (fairness-optimum) in the weight space. Nevertheless, more flexible accuracy-fairness trade-offs at inference time are practically desired since: 1) stakes of the same downstream task can vary for different individuals, and 2) different regions have diverse laws or regularization for fairness. If using the previous fairness methods, we have to train multiple models, each offering a specific level of accuracy-fairness trade-off. This is often computationally expensive, time-consuming, and difficult to deploy, making it less practical for real-world applications. To address this problem, we propose You Only Debias Once (YODO) to achieve in-situ flexible accuracy-fairness trade-offs at inference time, using a single model that trained only once. Instead of pursuing one individual fixed point (fairness-optimum) in the weight space, we aim to find a "line" in the weight space that connects the accuracy-optimum and fairness-optimum points using a single model. Points (models) on this line implement varying levels of accuracy-fairness trade-offs. At inference time, by manually selecting the specific position of the learned "line", our proposed method can achieve arbitrary accuracy-fairness trade-offs for different end-users and scenarios. Experimental results on tabular and image datasets show that YODO achieves flexible trade-offs between model accuracy and fairness, at ultra-low overheads. For example, if we need $100$ levels of trade-off on the \acse dataset, YODO takes $3.53$ seconds while training $100$ fixed models consumes $425$ seconds. The code is available at https://github.com/ahxt/yodo.

cs.LG↗

arXiv2025

Symbiotic Cooperation for Web Agents: Harnessing Complementary Strengths of Large and Small LLMs

Web browsing agents powered by large language models (LLMs) have shown tremendous potential in automating complex web-based tasks. Existing approaches typically rely on large LLMs (e.g., GPT-4o) to explore web environments and generate trajectory data, which is then used either for demonstration retrieval (for large LLMs) or to distill small LLMs (e.g., Llama3) in a process that remains decoupled from the exploration. In this paper, we propose AgentSymbiotic, an iterative framework that couples data synthesis with task-performance, yielding a "symbiotic improvement" for both large and small LLMs. Our study uncovers a complementary dynamic between LLM types: while large LLMs excel at generating high-quality trajectories for distillation, the distilled small LLMs-owing to their distinct reasoning capabilities-often choose actions that diverge from those of their larger counterparts. This divergence drives the exploration of novel trajectories, thereby enriching the synthesized data. However, we also observe that the performance of small LLMs becomes a bottleneck in this iterative enhancement process. To address this, we propose two innovations in LLM distillation: a speculative data synthesis strategy that mitigates off-policy bias, and a multi-task learning approach designed to boost the reasoning capabilities of the student LLM. Furthermore, we introduce a Hybrid Mode for Privacy Preservation to address user privacy concerns. Evaluated on the WEBARENA benchmark, AgentSymbiotic achieves SOTA performance with both LLM types. Our best Large LLM agent reaches 52%, surpassing the previous best of 45%, while our 8B distilled model demonstrates a competitive 49%, exceeding the prior best of 28%. Code will be released upon acceptance.

cs.MA↗