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Tianyu Liu

Publications and source records attributed to Tianyu Liu.

At least 55 records · Page 3Linked to original sources

Double: Breaking the Acceleration Limit via Double Retrieval Speculative Parallelism

Parallel Speculative Decoding (PSD) accelerates traditional Speculative Decoding (SD) by overlapping draft generation with verification. However, it remains hampered by two fundamental challenges: (1) a theoretical speedup ceiling dictated by the speed ratio between the draft and target models, and (2) high computational waste and pipeline stall due to mid-sequence token rejections of early errors. To address these limitations, we introduce \textsc{Double} (Double Retrieval Speculative Parallelism). By bridging the gap between SD and PSD, our framework resolves the Retrieval \emph{Precision-Efficiency Dilemma} through a novel synchronous mechanism. Specifically, we enable the draft model to execute iterative retrieval speculations to break the theoretical speedup limits; to alleviate rejections without rollback, the target model performs authoritative retrieval to generate multi-token guidance. \textsc{Double} is entirely training-free and lossless. Extensive experiments demonstrate state-of-the-art speedup of $\textbf{5.3}\times$ on LLaMA3.3-70B and $\textbf{2.8}\times$ on Qwen3-32B, significantly outperforming the advanced method EAGLE-3 that requires extensive model training.

cs.CL↗

Advancing AI Research Assistants with Expert-Involved Learning

Large language models (LLMs) and large multimodal models (LMMs) promise to accelerate biomedical discovery, yet their reliability remains unclear. We introduce ARIEL (AI Research Assistant for Expert-in-the-Loop Learning), an open-source evaluation and optimization framework that pairs a curated multimodal biomedical corpus with expert-vetted tasks to probe two capabilities: full-length article summarization and fine-grained figure interpretation. Using uniform protocols and blinded PhD-level evaluation, we find that state-of-the-art models generate fluent but incomplete summaries, whereas LMMs struggle with detailed visual reasoning. We later observe that prompt engineering and lightweight fine-tuning substantially improve textual coverage, and a compute-scaled inference strategy enhances visual question answering. We build an ARIEL agent that integrates textual and visual cues, and we show it can propose testable mechanistic hypotheses. ARIEL delineates current strengths and limitations of foundation models, and provides a reproducible platform for advancing trustworthy AI in biomedicine.

cs.AI↗

TeamPath: Building MultiModal Pathology Experts with Reasoning AI Copilots

Advances in AI have introduced several strong models in computational pathology to usher it into the era of multi-modal diagnosis, analysis, and interpretation. However, the current pathology-specific visual language models still lack capacities in making the diagnosis with rigorous reasoning paths as well as handling divergent tasks, and thus, challenges of building AI Copilots for real scenarios still exist. Here we introduce TeamPath, an AI system powered by reinforcement learning and router-enhanced solutions based on large-scale histopathology multimodal datasets, to work as a virtual assistant for expert-level disease diagnosis, patch-level information summarization, and cross-modality generation to integrate transcriptomic information for clinical usage. We also collaborate with pathologists from Yale School of Medicine to demonstrate that TeamPath can assist them in working more efficiently by identifying and correcting expert conclusions and reasoning paths. We also discuss the human evaluation results to support the reasoning quality from TeamPath. Overall, TeamPath can flexibly choose the best settings according to the needs, and serve as an innovative and reliable system for information communication across different modalities and experts.

q-bio.QM↗

AutoWeather4D: Autonomous Driving Video Weather Conversion via G-Buffer Dual-Pass Editing

Generative video models have significantly advanced the photorealistic synthesis of adverse weather for autonomous driving; however, they consistently demand massive datasets to learn rare weather scenarios. While 3D-aware editing methods alleviate these data constraints by augmenting existing video footage, they are fundamentally bottlenecked by costly per-scene optimization and suffer from inherent geometric and illumination entanglement. In this work, we introduce AutoWeather4D, a feed-forward 3D-aware weather editing framework designed to explicitly decouple geometry and illumination. At the core of our approach is a G-buffer Dual-pass Editing mechanism. The Geometry Pass leverages explicit structural foundations to enable surface-anchored physical interactions, while the Light Pass analytically resolves light transport, accumulating the contributions of local illuminants into the global illumination to enable dynamic 3D local relighting. Extensive experiments demonstrate that AutoWeather4D achieves comparable photorealism and structural consistency to generative baselines while enabling fine-grained parametric physical control, serving as a practical data engine for autonomous driving.

cs.CV↗

Accelerating Scientific Discovery with Autonomous Goal-evolving Agents

There has been unprecedented interest in developing agents that expand the boundary of scientific discovery, primarily by optimizing quantitative objective functions specified by scientists. However, for grand challenges in science, these objectives may only be imperfect proxies. We argue that automating objective function design is a central, yet unmet need for scientific discovery agents. In this work, we introduce the Scientific Autonomous Goal-evolving Agent (SAGA) to address this challenge. SAGA employs a bi-level architecture in which an outer loop of LLM agents analyzes optimization outcomes, proposes new objectives, and converts them into computable scoring functions, while an inner loop performs solution optimization under the current objectives. This bi-level design enables systematic exploration of the space of objectives and their trade-offs, rather than treating them as fixed inputs. We demonstrate the framework through a wide range of design applications, including antibiotics, nanobodies, functional DNA sequences, inorganic materials, and chemical processes. Notably, our experimental validation identifies a structurally novel hit with promising potency and safety profiles for E. coli in the antibiotic design task, and three de novo PD-L1 binders in the nanobody design task. These results suggest that automating objective formulation can substantially improve the effectiveness of scientific discovery agents.

cs.AI↗

Taking a Deep Breath: Enhancing Language Modeling of Large Language Models with Sentinel Tokens

Large language models (LLMs) have shown promising efficacy across various tasks, becoming powerful tools in numerous aspects of human life. However, Transformer-based LLMs suffer a performance degradation when modeling long-term contexts due to they discard some information to reduce computational overhead. In this work, we propose a simple yet effective method to enable LLMs to take a deep breath, encouraging them to summarize information contained within discrete text chunks. Specifically, we segment the text into multiple chunks and insert special token at the end of each chunk. We then modify the attention mask to integrate the chunk's information into the corresponding token. This facilitates LLMs to interpret information not only from historical individual tokens but also from the token, aggregating the chunk's semantic information. Experiments on language modeling and out-of-domain downstream tasks validate the superiority of our approach.

cs.CL↗

Mitigating Mixed-field Interference in Near-field and Far-field Communications: An Antenna Selection Approach

In mixed near-field and far-field systems, the nonorthogonality between near-field and far-field channels may cause severe inter-user interference and hence degrade rate performance, when the analog beamforming is designed based on the low-complexity full-array maximum ratio transmission (MRT). To tackle this issue, we propose in this paper an antenna selection-based transmission framework to effectively suppress mixed-field interference without mechanically altering antenna structures. To this end, an optimization problem is formulated to maximize the sum-rate of mixed-field systems, by jointly designing antenna selection and power allocation under the MRT-based analog beamforming. As the problem is non-convex and generally difficult to solve optimally, we first consider a typical two-user scenario to obtain useful insights. Interestingly, we analytically show that the strong mixed-field interference can be substantially mitigated by deactivating only a small portion of antennas, yet without compromising array gains too much. Moreover, an inherent tradeoff is revealed in antenna selection between interference suppression and array-gain enhancement, based on which a suboptimal number of deactivated antennas for achieving the maximum sum-rate is obtained. Next, for the general multi-user case, we develop an efficient penalty dual decomposition (PDD)-based two-layer framework to obtain its high quality solution by using the block coordinate descent (BCD) and successive convex approximation (SCA) techniques. To further reduce the computational complexity, a low-complexity antenna deactivation strategy is proposed capitalizing on an interference suppression criterion. Last, numerical results demonstrate that the proposed scheme achieves a favorable trade-off between interference suppression and array gain loss, hence achieving significant performance gains over various baseline schemes.

eess.SP↗

Transducing Language Models

Modern language models define distributions over strings, but downstream tasks often require different output formats. For instance, a model that generates byte-pair strings does not directly produce word-level predictions, and a DNA model does not directly produce amino-acid sequences. In such cases, a deterministic string-to-string transformation can convert the model's output to the desired form. This is a familiar pattern in probability theory: applying a function $f$ to a random variable $X\sim p$ yields a transformed random variable $f(X)$ with an induced distribution. While such transformations are occasionally used in language modeling, prior work does not treat them as yielding new, fully functional language models. We formalize this perspective and introduce a general framework for language models derived from deterministic string-to-string transformations. We focus on transformations representable as finite-state transducers -- a commonly used state-machine abstraction for efficient string-to-string mappings. We develop algorithms that compose a language model with an FST to *marginalize* over source strings mapping to a given target, propagating probabilities through the transducer without altering model parameters and enabling *conditioning* on transformed outputs. We present an exact algorithm, an efficient approximation, and a theoretical analysis. We conduct experiments in three domains: converting language models from tokens to bytes, from tokens to words, and from DNA to amino acids. These experiments demonstrate inference-time adaptation of pretrained language models to match application-specific output requirements.

cs.CL↗

Ensembling Language Models with Sequential Monte Carlo

Practitioners have access to an abundance of language models and prompting strategies for solving many language modeling tasks; yet prior work shows that modeling performance is highly sensitive to both choices. Classical machine learning ensembling techniques offer a principled approach: aggregate predictions from multiple sources to achieve better performance than any single one. However, applying ensembling to language models during decoding is challenging: naively aggregating next-token probabilities yields samples from a locally normalized, biased approximation of the generally intractable ensemble distribution over strings. In this work, we introduce a unified framework for composing $K$ language models into $f$-ensemble distributions for a wide range of functions $f\colon\mathbb{R}_{\geq 0}^{K}\to\mathbb{R}_{\geq 0}$. To sample from these distributions, we propose a byte-level sequential Monte Carlo (SMC) algorithm that operates in a shared character space, enabling ensembles of models with mismatching vocabularies and consistent sampling in the limit. We evaluate a family of $f$-ensembles across prompt and model combinations for various structured text generation tasks, highlighting the benefits of alternative aggregation strategies over traditional probability averaging, and showing that better posterior approximations can yield better ensemble performance.

cs.CL↗

Uni-NTFM: A Unified Foundation Model for EEG Signal Representation Learning

Current foundation models for electroencephalography (EEG) rely on architectures adapted from computer vision or natural language processing, typically treating neural signals as pixel grids or token sequences. This approach overlooks that the neural activity is activated by diverse sparse coding across a complex geometric topological cortex. Inspired by biological neural mechanisms, we propose the Unified Neural Topological Foundation Model (Uni-NTFM), an architecture rooted in three core neuroscience principles. In detail, to align with the brain's decoupled coding mechanism, we design the Heterogeneous Feature Projection Module. This module simultaneously encodes both time-domain non-stationary transients and frequency-domain steady-state rhythms, ensuring high quality in both waveform morphology and spectral rhythms. Moreover, we introduce a Topological Embedding mechanism to inject structured spatial priors and align different sensor configurations onto a unified latent functional topography, effectively reconstructing the geometry of brain regions. Furthermore, we achieve functional modularization and sparse coding efficiency of biological networks by constructing the Mixture-of-Experts Transformer network. This dynamic routing mechanism assigns different signal patterns and tasks to specialized neural subnetworks, and effectively preventing task interference while increasing the model capacity to record-breaking 1.9 billion parameters. Uni-NTFM is pre-trained on a diverse corpus comprising 28,000 hours of EEG data, and outperforms existing models across nine distinct downstream tasks under both linear probing and fine-tuning settings, demonstrating that aligning model architecture with neural mechanisms is significant to learn universal representations and achieve generalizable brain decoding. Our code is available at: https://anonymous.4open.science/r/Uni-NTFM-0924.

eess.SP↗

OJBench: A Competition Level Code Benchmark For Large Language Models

Recent advancements in large language models (LLMs) have demonstrated significant progress in math and code reasoning capabilities. However, existing code benchmark are limited in their ability to evaluate the full spectrum of these capabilities, particularly at the competitive level. To bridge this gap, we introduce OJBench, a novel and challenging benchmark designed to assess the competitive-level code reasoning abilities of LLMs. OJBench comprises 232 programming competition problems from NOI and ICPC, providing a more rigorous test of models' reasoning skills. We conducted a comprehensive evaluation using OJBench on 37 models, including both closed-source and open-source models, reasoning-oriented and non-reasoning-oriented models. Our results indicate that even state-of-the-art reasoning-oriented models, such as o4-mini and Gemini-2.5-pro-exp, struggle with highly challenging competition-level problems. This highlights the significant challenges that models face in competitive-level code reasoning.

cs.CL↗

DrugPlayGround: Benchmarking Large Language Models and Embeddings for Drug Discovery

Large language models (LLMs) are in the ascendancy for research in drug discovery, offering unprecedented opportunities to reshape drug research by accelerating hypothesis generation, optimizing candidate prioritization, and enabling more scalable and cost-effective drug discovery pipelines. However there is currently a lack of objective assessments of LLM performance to ascertain their advantages and limitations over traditional drug discovery platforms. To tackle this emergent problem, we have developed DrugPlayGround, a framework to evaluate and benchmark LLM performance for generating meaningful text-based descriptions of physiochemical drug characteristics, drug synergism, drug-protein interactions, and the physiological response to perturbations introduced by drug molecules. Moreover, DrugPlayGround is designed to work with domain experts to provide detailed explanations for justifying the predictions of LLMs, thereby testing LLMs for chemical and biological reasoning capabilities to push their greater use at the frontier of drug discovery at all of its stages.

cs.LG↗

RuleSmith: Multi-Agent LLMs for Automated Game Balancing

Game balancing is a longstanding challenge requiring repeated playtesting, expert intuition, and extensive manual tuning. We introduce RuleSmith, the first framework that achieves automated game balancing by leveraging the reasoning capabilities of multi-agent LLMs. It couples a game engine, multi-agent LLMs self-play, and Bayesian optimization operating over a multi-dimensional rule space. As a proof of concept, we instantiate RuleSmith on CivMini, a simplified civilization-style game containing heterogeneous factions, economy systems, production rules, and combat mechanics, all governed by tunable parameters. LLM agents interpret textual rulebooks and game states to generate actions, to conduct fast evaluation of balance metrics such as win-rate disparities. To search the parameter landscape efficiently, we integrate Bayesian optimization with acquisition-based adaptive sampling and discrete projection: promising candidates receive more evaluation games for accurate assessment, while exploratory candidates receive fewer games for efficient exploration. Experiments show that RuleSmith converges to highly balanced configurations and provides interpretable rule adjustments that can be directly applied to downstream game systems. Our results illustrate that LLM simulation can serve as a powerful surrogate for automating design and balancing in complex multi-agent environments.

cs.LG↗

HIPPO: Accelerating Video Large Language Models Inference via Holistic-aware Parallel Speculative Decoding

Speculative decoding (SD) has emerged as a promising approach to accelerate LLM inference without sacrificing output quality. Existing SD methods tailored for video-LLMs primarily focus on pruning redundant visual tokens to mitigate the computational burden of massive visual inputs. However, existing methods do not achieve inference acceleration comparable to text-only LLMs. We observe from extensive experiments that this phenomenon mainly stems from two limitations: (i) their pruning strategies inadequately preserve visual semantic tokens, degrading draft quality and acceptance rates; (ii) even with aggressive pruning (e.g., 90% visual tokens removed), the draft model's remaining inference cost limits overall speedup. To address these limitations, we propose HIPPO, a general holistic-aware parallel speculative decoding framework. Specifically, HIPPO proposes (i) a semantic-aware token preservation method, which fuses global attention scores with local visual semantics to retain semantic information at high pruning ratios; (ii) a video parallel SD algorithm that decouples and overlaps draft generation and target verification phases. Experiments on four video-LLMs across six benchmarks demonstrate HIPPO's effectiveness, yielding up to 3.51x speedup compared to vanilla auto-regressive decoding.

cs.CV↗

TALON: Confidence-Aware Speculative Decoding with Adaptive Token Trees

Speculative decoding (SD) has become a standard technique for accelerating LLM inference without sacrificing output quality. Recent advances in speculative decoding have shifted from sequential chain-based drafting to tree-structured generation, where the draft model constructs a tree of candidate tokens to explore multiple possible drafts in parallel. However, existing tree-based SD methods typically build a fixed-width, fixed-depth draft tree, which fails to adapt to the varying difficulty of tokens and contexts. As a result, the draft model cannot dynamically adjust the tree structure to early stop on difficult tokens and extend generation for simple ones. To address these challenges, we introduce TALON, a training-free, budget-driven adaptive tree expansion framework that can be plugged into existing tree-based methods. Unlike static methods, TALON constructs the draft tree iteratively until a fixed token budget is met, using a hybrid expansion strategy that adaptively allocates the node budget to each layer of the draft tree. This framework naturally shapes the draft tree into a "deep-and-narrow" form for deterministic contexts and a "shallow-and-wide" form for uncertain branches, effectively optimizing the trade-off between exploration width and generation depth under a given budget. Extensive experiments across 5 models and 6 datasets demonstrate that TALON consistently outperforms state-of-the-art EAGLE-3, achieving up to 5.16x end-to-end speedup over auto-regressive decoding.

cs.CL↗

KALE: Enhancing Knowledge Manipulation in Large Language Models via Knowledge-aware Learning

Despite the impressive performance of large language models (LLMs) pretrained on vast knowledge corpora, advancing their knowledge manipulation-the ability to effectively recall, reason, and transfer relevant knowledge-remains challenging. Existing methods mainly leverage Supervised Fine-Tuning (SFT) on labeled datasets to enhance LLMs' knowledge manipulation ability. However, we observe that SFT models still exhibit the known&incorrect phenomenon, where they explicitly possess relevant knowledge for a given question but fail to leverage it for correct answers. To address this challenge, we propose KALE (Knowledge-Aware LEarning)-a post-training framework that leverages knowledge graphs (KGs) to generate high-quality rationales and enhance LLMs' knowledge manipulation ability. Specifically, KALE first introduces a Knowledge-Induced (KI) data synthesis method that efficiently extracts multi-hop reasoning paths from KGs to generate high-quality rationales for question-answer pairs. Then, KALE employs a Knowledge-Aware (KA) fine-tuning paradigm that enhances knowledge manipulation by internalizing rationale-guided reasoning through minimizing the KL divergence between predictions with and without rationales. Extensive experiments on eight popular benchmarks across six different LLMs demonstrate the effectiveness of KALE, achieving accuracy improvements of up to 11.72% and an average of 4.18%.

cs.CL↗

Semi-Supervised Facial Expression Recognition based on Dynamic Threshold and Negative Learning

Facial expression recognition is a key task in human-computer interaction and affective computing. However, acquiring a large amount of labeled facial expression data is often costly. Therefore, it is particularly important to design a semi-supervised facial expression recognition algorithm that makes full use of both labeled and unlabeled data. In this paper, we propose a semi-supervised facial expression recognition algorithm based on Dynamic Threshold Adjustment (DTA) and Selective Negative Learning (SNL). Initially, we designed strategies for local attention enhancement and random dropout of feature maps during feature extraction, which strengthen the representation of local features while ensuring the model does not overfit to any specific local area. Furthermore, this study introduces a dynamic thresholding method to adapt to the requirements of the semi-supervised learning framework for facial expression recognition tasks, and through a selective negative learning strategy, it fully utilizes unlabeled samples with low confidence by mining useful expression information from complementary labels, achieving impressive results. We have achieved state-of-the-art performance on the RAF-DB and AffectNet datasets. Our method surpasses fully supervised methods even without using the entire dataset, which proves the effectiveness of our approach.

cs.CV↗

Quantum Geometric Origin of Orbital Magnetization

The exploration of the Riemannian structure of the Hilbert space has led to the concept of quantum geometry, comprising geometric quantities exemplified by Berry curvature and quantum metric. While this framework has profoundly advanced the understanding of various electronic phenomena, its potential for illuminating magnetic phenomena has remained less explored. In this Perspective, we highlight how quantum geometry paves a new way for understanding magnetization within a single-particle framework. We first elucidate the geometric origin of equilibrium magnetization in the modern theory of magnetization, then discuss the role of quantum geometry in kinetic magnetization, and finally outline promising future directions at the frontier of quantum geometric magnetization.

cond-mat.mes-hall↗