arXiv subjects

Tianyu Liu

Publications and source records attributed to Tianyu Liu.

At least 73 records · Page 4Linked to original sources

arXiv2026

Fusion of Multiscale Features Via Centralized Sparse-attention Network for EEG Decoding

Electroencephalography (EEG) signal decoding is a key technology that translates brain activity into executable commands, laying the foundation for direct brain-machine interfacing and intelligent interaction. To address the inherent spatiotemporal heterogeneity of EEG signals, this paper proposes a multi-branch parallel architecture, where each temporal scale is equipped with an independent spatial feature extraction module. To further enhance multi-branch feature fusion, we propose a Fusion of Multiscale Features via Centralized Sparse-attention Network (EEG-CSANet), a centralized sparse-attention network. It employs a main-auxiliary branch architecture, where the main branch models core spatiotemporal patterns via multiscale self-attention, and the auxiliary branch facilitates efficient local interactions through sparse cross-attention. Experimental results show that EEG-CSANet achieves state-of-the-art (SOTA) performance across five public datasets (BCIC-IV-2A, BCIC-IV-2B, HGD, SEED, and SEED-VIG), with accuracies of 88.54%, 91.09%, 97.15%, 96.03%, and 90.56%, respectively. Such performance demonstrates its strong adaptability and robustness across various EEG decoding tasks. Moreover, extensive ablation studies are conducted to enhance the interpretability of EEG-CSANet. In the future, we hope that EEG-CSANet could serve as a promising baseline model in the field of EEG signal decoding. The source code is publicly available at: https://github.com/Xiangrui-Cai/EEG-CSANet

cs.LG↗

arXiv2025

A Survey of Vibe Coding with Large Language Models

The advancement of large language models (LLMs) has catalyzed a paradigm shift from code generation assistance to autonomous coding agents, enabling a novel development methodology termed "Vibe Coding" where developers validate AI-generated implementations through outcome observation rather than line-by-line code comprehension. Despite its transformative potential, the effectiveness of this emergent paradigm remains under-explored, with empirical evidence revealing unexpected productivity losses and fundamental challenges in human-AI collaboration. To address this gap, this survey provides the first comprehensive and systematic review of Vibe Coding with large language models, establishing both theoretical foundations and practical frameworks for this transformative development approach. Drawing from systematic analysis of over 1000 research papers, we survey the entire vibe coding ecosystem, examining critical infrastructure components including LLMs for coding, LLM-based coding agent, development environment of coding agent, and feedback mechanisms. We first introduce Vibe Coding as a formal discipline by formalizing it through a Constrained Markov Decision Process that captures the dynamic triadic relationship among human developers, software projects, and coding agents. Building upon this theoretical foundation, we then synthesize existing practices into five distinct development models: Unconstrained Automation, Iterative Conversational Collaboration, Planning-Driven, Test-Driven, and Context-Enhanced Models, thus providing the first comprehensive taxonomy in this domain. Critically, our analysis reveals that successful Vibe Coding depends not merely on agent capabilities but on systematic context engineering, well-established development environments, and human-agent collaborative development models.

cs.AI↗

arXiv2025

Multi-Docker-Eval: A `Shovel of the Gold Rush' Benchmark on Automatic Environment Building for Software Engineering

Automated environment configuration is a critical bottleneck in scaling software engineering (SWE) automation. To provide a reliable evaluation standard for this task, we present Multi-Docker-Eval benchmark. It includes 40 real-world repositories spanning 9 programming languages and measures both success in achieving executable states and efficiency under realistic constraints. Our extensive evaluation of state-of-the-art LLMs and agent frameworks reveals key insights: (1) the overall success rate of current models is low (F2P at most 37.7%), with environment construction being the primary bottleneck; (2) model size and reasoning length are not decisive factors, and open-source models like DeepSeek-V3.1 and Kimi-K2 are competitive in both efficiency and effectiveness; (3) agent framework and programming language also have significantly influence on success rate. These findings provide actionable guidelines for building scalable, fully automated SWE pipelines.

cs.SE↗

arXiv2025

Kimi-Dev: Agentless Training as Skill Prior for SWE-Agents

Large Language Models (LLMs) are increasingly applied to software engineering (SWE), with SWE-bench as a key benchmark. Solutions are split into SWE-Agent frameworks with multi-turn interactions and workflow-based Agentless methods with single-turn verifiable steps. We argue these paradigms are not mutually exclusive: reasoning-intensive Agentless training induces skill priors, including localization, code edit, and self-reflection that enable efficient and effective SWE-Agent adaptation. In this work, we first curate the Agentless training recipe and present Kimi-Dev, an open-source SWE LLM achieving 60.4\% on SWE-bench Verified, the best among workflow approaches. With additional SFT adaptation on 5k publicly-available trajectories, Kimi-Dev powers SWE-Agents to 48.6\% pass@1, on par with that of Claude 3.5 Sonnet (241022 version). These results show that structured skill priors from Agentless training can bridge workflow and agentic frameworks for transferable coding agents.

cs.AI↗

arXiv2025

From Code Foundation Models to Agents and Applications: A Comprehensive Survey and Practical Guide to Code Intelligence

Large language models (LLMs) have fundamentally transformed automated software development by enabling direct translation of natural language descriptions into functional code, driving commercial adoption through tools like Github Copilot (Microsoft), Cursor (Anysphere), Trae (ByteDance), and Claude Code (Anthropic). While the field has evolved dramatically from rule-based systems to Transformer-based architectures, achieving performance improvements from single-digit to over 95\% success rates on benchmarks like HumanEval. In this work, we provide a comprehensive synthesis and practical guide (a series of analytic and probing experiments) about code LLMs, systematically examining the complete model life cycle from data curation to post-training through advanced prompting paradigms, code pre-training, supervised fine-tuning, reinforcement learning, and autonomous coding agents. We analyze the code capability of the general LLMs (GPT-4, Claude, LLaMA) and code-specialized LLMs (StarCoder, Code LLaMA, DeepSeek-Coder, and QwenCoder), critically examining the techniques, design decisions, and trade-offs. Further, we articulate the research-practice gap between academic research (e.g., benchmarks and tasks) and real-world deployment (e.g., software-related code tasks), including code correctness, security, contextual awareness of large codebases, and integration with development workflows, and map promising research directions to practical needs. Last, we conduct a series of experiments to provide a comprehensive analysis of code pre-training, supervised fine-tuning, and reinforcement learning, covering scaling law, framework selection, hyperparameter sensitivity, model architectures, and dataset comparisons.

cs.SE↗

arXiv2025

Mapping vacancy and bonding electron distributions around aluminium nanovoids

All materials have defects and many contain nanostructures, both of which disrupt chemical bonding - the basis of materials properties. No experimental measurements of bonding electron distributions associated with defects and nanostructures have ever been possible. We present a method enabling such measurements and interrogate nanovoids surrounded by vacancies - the most fundamental of nanostructures and defects - in aluminium. We measure the volume of a vacancy with 3% uncertainty and map vacancy concentrations surrounding nanovoids with nanometre resolution in three dimensions where previously only two-dimensional mapping was possible. We discover that radiation-damaged voids can "heal". Our bonding measurements are depth-resolved, vacancy-sensitive, and agree with density functional theory. This work opens bonding electron density measurements to inhomogeneous nanostructured multi-phased materials so that the electronic origins of phenomena such as strengthening, weakening, interface functionality, solute diffusion and phase transformations within them may be revealed.

cond-mat.mtrl-sci↗

arXiv2025

IW-Bench: Evaluating Large Multimodal Models for Converting Image-to-Web

Recently advancements in large multimodal models have led to significant strides in image comprehension capabilities. Despite these advancements, there is a lack of the robust benchmark specifically for assessing the Image-to-Web conversion proficiency of these large models. Primarily, it is essential to ensure the integrity of the web elements generated. These elements comprise visible and invisible categories. Previous evaluation methods (e.g.,BLEU) are notably susceptible to significant alterations due to the presence of invisible elements in Web. Furthermore, it is crucial to measure the layout information of web pages, referring to the positional relationships between elements, which is overlooked by previous work. To address challenges, we have curated and aligned a benchmark of images and corresponding web codes (IW-BENCH). Specifically, we propose the Element Accuracy, which tests the completeness of the elements by parsing the Document Object Model (DOM) tree. Layout Accuracy is also proposed to analyze the positional relationships of elements by converting DOM tree into a common subsequence. Besides, we design a five-hop multimodal Chain-of-Thought Prompting for better performance, which contains five hop: 1) SoM prompt injection. 2) Inferring Elements. 3) Inferring Layout. 4) Inferring Web code. 5) Reflection. Our benchmark comprises 1200 pairs of images and web codes with varying levels of difficulty. We have conducted extensive experiments on existing large multimodal models, offering insights into their performance and areas for improvement in image-to-web domain.

cs.CL↗

arXiv2025

Robust Estimation for Dependent Binary Network Data

We consider the problem of learning the interaction strength between the nodes of a network based on dependent binary observations residing on these nodes, generated from a Markov Random Field (MRF). Since these observations can possibly be corrupted/noisy in larger networks in practice, it is important to robustly estimate the parameters of the underlying true MRF to account for such inherent contamination in observed data. However, it is well-known that classical likelihood and pseudolikelihood based approaches are highly sensitive to even a small amount of data contamination. So, in this paper, we propose a density power divergence (DPD) based robust generalization of the computationally efficient maximum pseudolikelihood (MPL) estimator of the interaction strength parameter, and derive its rate of consistency under the pure model. Along the way, we establish consistency and asymptotics for a class of general $Z$-estimators, covering our proposed DPD based estimators, under flexible assumptions that hold for a substantial class of standard models. To the best of our knowledge, these are the first central limit theorems for the class of general $Z$-estimators in such settings. Moreover, we show that the gross error sensitivities of the proposed DPD based estimators are significantly smaller than that of the MPL estimator, thereby theoretically justifying the greater (local) robustness of the former under contaminated settings. Finally, we demonstrate the superior (finite sample) performance of the DPD based variants over the traditional MPL estimator in a number of synthetically generated contaminated network datasets, and apply them to learn the network interaction strength in several real datasets from diverse domains of social science, neurobiology and genomics.

stat.ME↗

arXiv2025

A Comprehensive Survey on Long Context Language Modeling

Efficient processing of long contexts has been a persistent pursuit in Natural Language Processing. With the growing number of long documents, dialogues, and other textual data, it is important to develop Long Context Language Models (LCLMs) that can process and analyze extensive inputs in an effective and efficient way. In this paper, we present a comprehensive survey on recent advances in long-context modeling for large language models. Our survey is structured around three key aspects: how to obtain effective and efficient LCLMs, how to train and deploy LCLMs efficiently, and how to evaluate and analyze LCLMs comprehensively. For the first aspect, we discuss data strategies, architectural designs, and workflow approaches oriented with long context processing. For the second aspect, we provide a detailed examination of the infrastructure required for LCLM training and inference. For the third aspect, we present evaluation paradigms for long-context comprehension and long-form generation, as well as behavioral analysis and mechanism interpretability of LCLMs. Beyond these three key aspects, we thoroughly explore the diverse application scenarios where existing LCLMs have been deployed and outline promising future development directions. This survey provides an up-to-date review of the literature on long-context LLMs, which we wish to serve as a valuable resource for both researchers and engineers. An associated GitHub repository collecting the latest papers and repos is available at: \href{https://github.com/LCLM-Horizon/A-Comprehensive-Survey-For-Long-Context-Language-Modeling}{\color[RGB]{175,36,67}{LCLM-Horizon}}.

cs.CL↗

arXiv2025

A Clarification on Quantum-Metric-Induced Nonlinear Transport

Over the years, Berry curvature, which is associated with the imaginary part of the quantum geometric tensor, has profoundly impacted many branches of physics. Recently, quantum metric, the real part of the quantum geometric tensor, has been recognized as indispensable in comprehensively characterizing the intrinsic properties of condensed matter systems. The intrinsic second-order nonlinear conductivity induced by the quantum metric has attracted significant recent interest. However, its expression varies across the literature. Here, we reconcile this discrepancy by systematically examining the nonlinear conductivity using the standard perturbation theory, the wave packet dynamics, and the Luttinger-Kohn approach. Moreover, inspired by the Dirac model, we propose a toy model that suppresses the Berry-curvature-induced nonlinear transport, making it suitable for studying the quantum-metric-induced nonlinear conductivity. This work provides a clearer and more unified understanding of the quantum-metric contributions to nonlinear transport. It also establishes a solid foundation for future theoretical developments and experimental explorations in this highly active and rapidly evolving field.

cond-mat.mes-hall↗

arXiv2025

Mitigating Overthinking through Reasoning Shaping

Large reasoning models (LRMs) boosted by Reinforcement Learning from Verifier Reward (RLVR) have shown great power in problem solving, yet they often cause overthinking: excessive, meandering reasoning that inflates computational cost. Prior designs of penalization in RLVR manage to reduce token consumption while often harming model performance, which arises from the oversimplicity of token-level supervision. In this paper, we argue that the granularity of supervision plays a crucial role in balancing efficiency and accuracy, and propose Group Relative Segment Penalization (GRSP), a step-level method to regularize reasoning. Since preliminary analyses show that reasoning segments are strongly correlated with token consumption and model performance, we design a length-aware weighting mechanism across segment clusters. Extensive experiments demonstrate that GRSP achieves superior token efficiency without heavily compromising accuracy, especially the advantages with harder problems. Moreover, GRSP stabilizes RL training and scales effectively across model sizes.

cs.CL↗

arXiv2025

Conceptualizing and Modeling Communication-Based Cyberattacks on Automated Vehicles

Adaptive Cruise Control (ACC) is rapidly proliferating across electric vehicles (EVs) and internal combustion engine (ICE) vehicles, enhancing traffic flow while simultaneously expanding the attack surface for communication-based cyberattacks. Because the two powertrains translate control inputs into motion differently, their cyber-resilience remains unquantified. Therefore, we formalize six novel message-level attack vectors and implement them in a ring-road simulation that systematically varies the ACC market penetration rates (MPRs) and the spatial pattern of compromised vehicles. A three-tier risk taxonomy converts disturbance metrics into actionable defense priorities for practitioners. Across all simulation scenarios, EV platoons exhibit lower velocity standard deviation, reduced spacing oscillations, and faster post-attack recovery compared to ICE counterparts, revealing an inherent stability advantage. These findings clarify how controller-to-powertrain coupling influences vulnerability and offer quantitative guidance for the detection and mitigation of attacks in mixed automated traffic.

eess.SY↗

arXiv2025

ECHO: Toward Contextual Seq2Seq Paradigms in Large EEG Models

Electroencephalography (EEG), with its broad range of applications, necessitates models that can generalize effectively across various tasks and datasets. Large EEG Models (LEMs) address this by pretraining encoder-centric architectures on large-scale unlabeled data to extract universal representations. While effective, these models lack decoders of comparable capacity, limiting the full utilization of the learned features. To address this issue, we introduce ECHO, a novel decoder-centric LEM paradigm that reformulates EEG modeling as sequence-to-sequence learning. ECHO captures layered relationships among signals, labels, and tasks within sequence space, while incorporating discrete support samples to construct contextual cues. This design equips ECHO with in-context learning, enabling dynamic adaptation to heterogeneous tasks without parameter updates. Extensive experiments across multiple datasets demonstrate that, even with basic model components, ECHO consistently outperforms state-of-the-art single-task LEMs in multi-task settings, showing superior generalization and adaptability.

cs.LG↗

arXiv2025

P-Aligner: Enabling Pre-Alignment of Language Models via Principled Instruction Synthesis

Large Language Models (LLMs) are expected to produce safe, helpful, and honest content during interaction with human users, but they frequently fail to align with such values when given flawed instructions, e.g., missing context, ambiguous directives, or inappropriate tone, leaving substantial room for improvement along multiple dimensions. A cost-effective yet high-impact way is to pre-align instructions before the model begins decoding. Existing approaches either rely on prohibitive test-time search costs or end-to-end model rewrite, which is powered by a customized training corpus with unclear objectives. In this work, we demonstrate that the goal of efficient and effective preference alignment can be achieved by P-Aligner, a lightweight module generating instructions that preserve the original intents while being expressed in a more human-preferred form. P-Aligner is trained on UltraPrompt, a new dataset synthesized via a proposed principle-guided pipeline using Monte-Carlo Tree Search, which systematically explores the space of candidate instructions that are closely tied to human preference. Experiments across different methods show that P-Aligner generally outperforms strong baselines across various models and benchmarks, including average win-rate gains of 28.35% and 8.69% on GPT-4-turbo and Gemma-2-SimPO, respectively. Further analyses validate its effectiveness and efficiency through multiple perspectives, including data quality, search strategies, iterative deployment, and time overhead.

cs.CL↗

arXiv2025

MM-FusionNet: Context-Aware Dynamic Fusion for Multi-modal Fake News Detection with Large Vision-Language Models

The proliferation of multi-modal fake news on social media poses a significant threat to public trust and social stability. Traditional detection methods, primarily text-based, often fall short due to the deceptive interplay between misleading text and images. While Large Vision-Language Models (LVLMs) offer promising avenues for multi-modal understanding, effectively fusing diverse modal information, especially when their importance is imbalanced or contradictory, remains a critical challenge. This paper introduces MM-FusionNet, an innovative framework leveraging LVLMs for robust multi-modal fake news detection. Our core contribution is the Context-Aware Dynamic Fusion Module (CADFM), which employs bi-directional cross-modal attention and a novel dynamic modal gating network. This mechanism adaptively learns and assigns importance weights to textual and visual features based on their contextual relevance, enabling intelligent prioritization of information. Evaluated on the large-scale Multi-modal Fake News Dataset (LMFND) comprising 80,000 samples, MM-FusionNet achieves a state-of-the-art F1-score of 0.938, surpassing existing multi-modal baselines by approximately 0.5% and significantly outperforming single-modal approaches. Further analysis demonstrates the model's dynamic weighting capabilities, its robustness to modality perturbations, and performance remarkably close to human-level, underscoring its practical efficacy and interpretability for real-world fake news detection.

cs.CR↗

arXiv2025

Self-Evolving Critique Abilities in Large Language Models

Despite their remarkable performance, Large Language Models (LLMs) face a critical challenge: providing feedback for tasks where human evaluation is difficult or where LLMs potentially outperform humans. In such scenarios, leveraging the critique ability of LLMs themselves - identifying and correcting flaws - shows considerable promise. This paper explores enhancing critique abilities of LLMs, noting that current approaches rely on human annotations or more powerful models, leaving the challenge of improving critique abilities without external supervision unresolved. We introduce SCRIT (Self-evolving CRITic), a framework that trains LLMs with self-generated data to evolve their critique abilities. To address the low quality of naively generated data, we propose a contrastive-critic approach that uses reference solutions during data synthesis to enhance the model's understanding of key concepts, and incorporates a self-validation scheme to ensure data quality. The final trained model operates without any reference solutions at inference time. Implemented with Qwen2.5-72B-Instruct, a leading LLM, SCRIT demonstrates consistent improvements across a wide range of benchmarks spanning both mathematical and scientific reasoning: achieving a 10.0\% relative gain in critique-correction accuracy and a 19.0\% relative improvement in error identification F1-score. Our analysis reveals that SCRIT's performance scales positively with data and model size and enables continuous improvement through multi-round iterations.

cs.CL↗

arXiv2025

Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop

Artificial intelligence holds immense promise for transforming biology, yet a lack of standardized, cross domain, benchmarks undermines our ability to build robust, trustworthy models. Here, we present insights from a recent workshop that convened machine learning and computational biology experts across imaging, transcriptomics, proteomics, and genomics to tackle this gap. We identify major technical and systemic bottlenecks such as data heterogeneity and noise, reproducibility challenges, biases, and the fragmented ecosystem of publicly available resources and propose a set of recommendations for building benchmarking frameworks that can efficiently compare ML models of biological systems across tasks and data modalities. By promoting high quality data curation, standardized tooling, comprehensive evaluation metrics, and open, collaborative platforms, we aim to accelerate the development of robust benchmarks for AI driven Virtual Cells. These benchmarks are crucial for ensuring rigor, reproducibility, and biological relevance, and will ultimately advance the field toward integrated models that drive new discoveries, therapeutic insights, and a deeper understanding of cellular systems.

cs.LG↗

arXiv2025

Multilingual Multimodal Software Developer for Code Generation

The rapid advancement of Large Language Models (LLMs) has significantly improved code generation, yet most models remain text-only, neglecting crucial visual aids like diagrams and flowcharts used in real-world software development. To bridge this gap, we introduce MM-Coder, a Multilingual Multimodal software developer. MM-Coder integrates visual design inputs-Unified Modeling Language (UML) diagrams and flowcharts (termed Visual Workflow)-with textual instructions to enhance code generation accuracy and architectural alignment. To enable this, we developed MMc-Instruct, a diverse multimodal instruction-tuning dataset including visual-workflow-based code generation, allowing MM-Coder to synthesize textual and graphical information like human developers, distinct from prior work on narrow tasks. Furthermore, we introduce MMEval, a new benchmark for evaluating multimodal code generation, addressing existing text-only limitations. Our evaluations using MMEval highlight significant remaining challenges for models in precise visual information capture, instruction following, and advanced programming knowledge. Our work aims to revolutionize industrial programming by enabling LLMs to interpret and implement complex specifications conveyed through both text and visual designs.

cs.CL↗