arXiv subjects

Wei Peng

Publications and source records attributed to Wei Peng.

At least 55 records · Page 3Linked to original sources

arXiv2025

Generating Novel Brain Morphology by Deforming Learned Templates

Designing generative models for 3D structural brain MRI that synthesize morphologically-plausible and attribute-specific (e.g., age, sex, disease state) samples is an active area of research. Existing approaches based on frameworks like GANs or diffusion models synthesize the image directly, which may limit their ability to capture intricate morphological details. In this work, we propose a 3D brain MRI generation method based on state-of-the-art latent diffusion models (LDMs), called MorphLDM, that generates novel images by applying synthesized deformation fields to a learned template. Instead of using a reconstruction-based autoencoder (as in a typical LDM), our encoder outputs a latent embedding derived from both an image and a learned template that is itself the output of a template decoder; this latent is passed to a deformation field decoder, whose output is applied to the learned template. A registration loss is minimized between the original image and the deformed template with respect to the encoder and both decoders. Empirically, our approach outperforms generative baselines on metrics spanning image diversity, adherence with respect to input conditions, and voxel-based morphometry. Our code is available at https://github.com/alanqrwang/morphldm.

eess.IV↗

arXiv2025

Neural Autoregressive Modeling of Brain Aging

Brain aging synthesis is a critical task with broad applications in clinical and computational neuroscience. The ability to predict the future structural evolution of a subject's brain from an earlier MRI scan provides valuable insights into aging trajectories. Yet, the high-dimensionality of data, subtle changes of structure across ages, and subject-specific patterns constitute challenges in the synthesis of the aging brain. To overcome these challenges, we propose NeuroAR, a novel brain aging simulation model based on generative autoregressive transformers. NeuroAR synthesizes the aging brain by autoregressively estimating the discrete token maps of a future scan from a convenient space of concatenated token embeddings of a previous and future scan. To guide the generation, it concatenates into each scale the subject's previous scan, and uses its acquisition age and the target age at each block via cross-attention. We evaluate our approach on both the elderly population and adolescent subjects, demonstrating superior performance over state-of-the-art generative models, including latent diffusion models (LDM) and generative adversarial networks, in terms of image fidelity. Furthermore, we employ a pre-trained age predictor to further validate the consistency and realism of the synthesized images with respect to expected aging patterns. NeuroAR significantly outperforms key models, including LDM, demonstrating its ability to model subject-specific brain aging trajectories with high fidelity.

cs.LG↗

arXiv2025

WASABI: A Metric for Evaluating Morphometric Plausibility of Synthetic Brain MRIs

Generative models enhance neuroimaging through data augmentation, quality improvement, and rare condition studies. Despite advances in realistic synthetic MRIs, evaluations focus on texture and perception, lacking sensitivity to crucial anatomical fidelity. This study proposes a new metric, called WASABI (Wasserstein-Based Anatomical Brain Index), to assess the anatomical realism of synthetic brain MRIs. WASABI leverages \textit{SynthSeg}, a deep learning-based brain parcellation tool, to derive volumetric measures of brain regions in each MRI and uses the multivariate Wasserstein distance to compare distributions between real and synthetic anatomies. Based on controlled experiments on two real datasets and synthetic MRIs from five generative models, WASABI demonstrates higher sensitivity in quantifying anatomical discrepancies compared to traditional image-level metrics, even when synthetic images achieve near-perfect visual quality. Our findings advocate for shifting the evaluation paradigm beyond visual inspection and conventional metrics, emphasizing anatomical fidelity as a crucial benchmark for clinically meaningful brain MRI synthesis. Our code is available at https://github.com/BahramJafrasteh/wasabi-mri.

cs.CV↗

arXiv2025

CTISum: A New Benchmark Dataset For Cyber Threat Intelligence Summarization

Cyber Threat Intelligence (CTI) summarization involves generating concise and accurate highlights from web intelligence data, which is critical for providing decision-makers with actionable insights to swiftly detect and respond to cyber threats in the cybersecurity domain. Despite that, the development of efficient techniques for summarizing CTI reports, comprising facts, analytical insights, attack processes, and more, has been hindered by the lack of suitable datasets. To address this gap, we introduce CTISum, a new benchmark dataset designed for the CTI summarization task. Recognizing the significance of understanding attack processes, we also propose a novel fine-grained subtask: attack process summarization, which aims to help defenders assess risks, identify security gaps, and uncover vulnerabilities. Specifically, a multi-stage annotation pipeline is designed to collect and annotate CTI data from diverse web sources, alongside a comprehensive benchmarking of CTISum using both extractive, abstractive and LLMs-based summarization methods. Experimental results reveal that current state-of-the-art models face significant challenges when applied to CTISum, highlighting that automatic summarization of CTI reports remains an open research problem. The code and example dataset can be made publicly available at https://github.com/pengwei-iie/CTISum.

cs.CL↗

arXiv2025

More Vulnerable than You Think: On the Stability of Tool-Integrated LLM Agents

Current evaluations of tool-integrated LLM agents typically focus on end-to-end tool-usage evaluation while neglecting their stability. This limits their real-world applicability, as various internal or external factors can cause agents to crash or behave abnormally. Our research addresses this by investigating whether agents are vulnerable to errors throughout the entire tool invocation process, including reading tool documentation, selecting tools and generating parameters, and processing the tool's response. Through extensive experiments, we observe that agents are highly susceptible to errors at each stage and agents based on open-source models are more vulnerable than those based on proprietary models. We also find that increasing the model size does not significantly improve tool invocation reasoning and may make agents more vulnerable to attacks resembling normal user instructions. This highlights the importance of evaluating agent stability and offers valuable insights for future LLM development and evaluation.

cs.CL↗

arXiv2025

Diffusion Sampling Correction via Approximately 10 Parameters

While powerful for generation, Diffusion Probabilistic Models (DPMs) face slow sampling challenges, for which various distillation-based methods have been proposed. However, they typically require significant additional training costs and model parameter storage, limiting their practicality. In this work, we propose PCA-based Adaptive Search (PAS), which optimizes existing solvers for DPMs with minimal additional costs. Specifically, we first employ PCA to obtain a few basis vectors to span the high-dimensional sampling space, which enables us to learn just a set of coordinates to correct the sampling direction; furthermore, based on the observation that the cumulative truncation error exhibits an ``S"-shape, we design an adaptive search strategy that further enhances the sampling efficiency and reduces the number of stored parameters to approximately 10. Extensive experiments demonstrate that PAS can significantly enhance existing fast solvers in a plug-and-play manner with negligible costs. E.g., on CIFAR10, PAS optimizes DDIM's FID from 15.69 to 4.37 (NFE=10) using only 12 parameters and sub-minute training on a single A100 GPU. Code is available at https://github.com/onefly123/PAS.

cs.LG↗

arXiv2025

Biomed-DPT: Dual Modality Prompt Tuning for Biomedical Vision-Language Models

Prompt learning is one of the most effective paradigms for adapting pre-trained vision-language models (VLMs) to the biomedical image classification tasks in few shot scenarios. However, most of the current prompt learning methods only used the text prompts and ignored the particular structures (such as the complex anatomical structures and subtle pathological features) in the biomedical images. In this work, we propose Biomed-DPT, a knowledge-enhanced dual modality prompt tuning technique. In designing the text prompt, Biomed-DPT constructs a dual prompt including the template-driven clinical prompts and the large language model (LLM)-driven domain-adapted prompts, then extracts the clinical knowledge from the domain-adapted prompts through the knowledge distillation technique. In designing the vision prompt, Biomed-DPT introduces the zero vector as a soft prompt to leverage attention re-weighting so that the focus on non-diagnostic regions and the recognition of non-critical pathological features are avoided. Biomed-DPT achieves an average classification accuracy of 66.14\% across 11 biomedical image datasets covering 9 modalities and 10 organs, with performance reaching 78.06\% in base classes and 75.97\% in novel classes, surpassing the Context Optimization (CoOp) method by 6.20\%, 3.78\%, and 8.04\%, respectively. Our code are available at \underline{https://github.com/Kanyooo/Biomed-DPT}.

cs.CV↗

arXiv2025

Learning based convex approximation for constrained parametric optimization

We propose an input convex neural network (ICNN)-based self-supervised learning framework to solve continuous constrained optimization problems. By integrating the augmented Lagrangian method (ALM) with the constraint correction mechanism, our framework ensures \emph{non-strict constraint feasibility}, \emph{better optimality gap}, and \emph{best convergence rate} with respect to the state-of-the-art learning-based methods. We provide a rigorous convergence analysis, showing that the algorithm converges to a Karush-Kuhn-Tucker (KKT) point of the original problem even when the internal solver is a neural network, and the approximation error is bounded. We test our approach on a range of benchmark tasks including quadratic programming (QP), nonconvex programming, and large-scale AC optimal power flow problems. The results demonstrate that compared to existing solvers (e.g., \texttt{OSQP}, \texttt{IPOPT}) and the latest learning-based methods (e.g., DC3, PDL), our approach achieves a superior balance among accuracy, feasibility, and computational efficiency.

math.OC↗

arXiv2025

WorkTeam: Constructing Workflows from Natural Language with Multi-Agents

Workflows play a crucial role in enhancing enterprise efficiency by orchestrating complex processes with multiple tools or components. However, hand-crafted workflow construction requires expert knowledge, presenting significant technical barriers. Recent advancements in Large Language Models (LLMs) have improved the generation of workflows from natural language instructions (aka NL2Workflow), yet existing single LLM agent-based methods face performance degradation on complex tasks due to the need for specialized knowledge and the strain of task-switching. To tackle these challenges, we propose WorkTeam, a multi-agent NL2Workflow framework comprising a supervisor, orchestrator, and filler agent, each with distinct roles that collaboratively enhance the conversion process. As there are currently no publicly available NL2Workflow benchmarks, we also introduce the HW-NL2Workflow dataset, which includes 3,695 real-world business samples for training and evaluation. Experimental results show that our approach significantly increases the success rate of workflow construction, providing a novel and effective solution for enterprise NL2Workflow services.

cs.CL↗

arXiv2025

Semantics-Adaptive Activation Intervention for LLMs via Dynamic Steering Vectors

Large language models (LLMs) have achieved remarkable performance across many tasks, yet aligning them with desired behaviors remains challenging. Activation intervention has emerged as an effective and economical method to modify the behavior of LLMs. Despite considerable interest in this area, current intervention methods exclusively employ a fixed steering vector to modify model activations, lacking adaptability to diverse input semantics. To address this limitation, we propose Semantics-Adaptive Dynamic Intervention (SADI), a novel method that constructs a dynamic steering vector to intervene model activations at inference time. More specifically, SADI utilizes activation differences in contrastive pairs to precisely identify critical elements of an LLM (i.e., attention heads, hidden states, and neurons) for targeted intervention. During inference, SADI dynamically steers model behavior by scaling element-wise activations based on the directions of input semantics. Experimental results show that SADI outperforms established baselines by substantial margins, improving task performance without training. SADI's cost-effectiveness and generalizability across various LLM backbones and tasks highlight its potential as a versatile alignment technique.

cs.CL↗

arXiv2025

Vision Language Models in Medicine

With the advent of Vision-Language Models (VLMs), medical artificial intelligence (AI) has experienced significant technological progress and paradigm shifts. This survey provides an extensive review of recent advancements in Medical Vision-Language Models (Med-VLMs), which integrate visual and textual data to enhance healthcare outcomes. We discuss the foundational technology behind Med-VLMs, illustrating how general models are adapted for complex medical tasks, and examine their applications in healthcare. The transformative impact of Med-VLMs on clinical practice, education, and patient care is highlighted, alongside challenges such as data scarcity, narrow task generalization, interpretability issues, and ethical concerns like fairness, accountability, and privacy. These limitations are exacerbated by uneven dataset distribution, computational demands, and regulatory hurdles. Rigorous evaluation methods and robust regulatory frameworks are essential for safe integration into healthcare workflows. Future directions include leveraging large-scale, diverse datasets, improving cross-modal generalization, and enhancing interpretability. Innovations like federated learning, lightweight architectures, and Electronic Health Record (EHR) integration are explored as pathways to democratize access and improve clinical relevance. This review aims to provide a comprehensive understanding of Med-VLMs' strengths and limitations, fostering their ethical and balanced adoption in healthcare.

cs.CV↗

arXiv2025

PFDiff: Training-Free Acceleration of Diffusion Models Combining Past and Future Scores

Diffusion Probabilistic Models (DPMs) have shown remarkable potential in image generation, but their sampling efficiency is hindered by the need for numerous denoising steps. Most existing solutions accelerate the sampling process by proposing fast ODE solvers. However, the inevitable discretization errors of the ODE solvers are significantly magnified when the number of function evaluations (NFE) is fewer. In this work, we propose PFDiff, a novel training-free and orthogonal timestep-skipping strategy, which enables existing fast ODE solvers to operate with fewer NFE. Specifically, PFDiff initially utilizes score replacement from past time steps to predict a ``springboard". Subsequently, it employs this ``springboard" along with foresight updates inspired by Nesterov momentum to rapidly update current intermediate states. This approach effectively reduces unnecessary NFE while correcting for discretization errors inherent in first-order ODE solvers. Experimental results demonstrate that PFDiff exhibits flexible applicability across various pre-trained DPMs, particularly excelling in conditional DPMs and surpassing previous state-of-the-art training-free methods. For instance, using DDIM as a baseline, we achieved 16.46 FID (4 NFE) compared to 138.81 FID with DDIM on ImageNet 64x64 with classifier guidance, and 13.06 FID (10 NFE) on Stable Diffusion with 7.5 guidance scale. Code is available at \url{https://github.com/onefly123/PFDiff}.

cs.CV↗

arXiv2025

Self-supervised Monocular Depth Estimation Robust to Reflective Surface Leveraged by Triplet Mining

Self-supervised monocular depth estimation (SSMDE) aims to predict the dense depth map of a monocular image, by learning depth from RGB image sequences, eliminating the need for ground-truth depth labels. Although this approach simplifies data acquisition compared to supervised methods, it struggles with reflective surfaces, as they violate the assumptions of Lambertian reflectance, leading to inaccurate training on such surfaces. To tackle this problem, we propose a novel training strategy for an SSMDE by leveraging triplet mining to pinpoint reflective regions at the pixel level, guided by the camera geometry between different viewpoints. The proposed reflection-aware triplet mining loss specifically penalizes the inappropriate photometric error minimization on the localized reflective regions while preserving depth accuracy in non-reflective areas. We also incorporate a reflection-aware knowledge distillation method that enables a student model to selectively learn the pixel-level knowledge from reflective and non-reflective regions. This results in robust depth estimation across areas. Evaluation results on multiple datasets demonstrate that our method effectively enhances depth quality on reflective surfaces and outperforms state-of-the-art SSMDE baselines.

cs.CV↗

arXiv2025

Gradient Co-occurrence Analysis for Detecting Unsafe Prompts in Large Language Models

Unsafe prompts pose significant safety risks to large language models (LLMs). Existing methods for detecting unsafe prompts rely on data-driven fine-tuning to train guardrail models, necessitating significant data and computational resources. In contrast, recent few-shot gradient-based methods emerge, requiring only few safe and unsafe reference prompts. A gradient-based approach identifies unsafe prompts by analyzing consistent patterns of the gradients of safety-critical parameters in LLMs. Although effective, its restriction to directional similarity (cosine similarity) introduces ``directional bias'', limiting its capability to identify unsafe prompts. To overcome this limitation, we introduce GradCoo, a novel gradient co-occurrence analysis method that expands the scope of safety-critical parameter identification to include unsigned gradient similarity, thereby reducing the impact of ``directional bias'' and enhancing the accuracy of unsafe prompt detection. Comprehensive experiments on the widely-used benchmark datasets ToxicChat and XStest demonstrate that our proposed method can achieve state-of-the-art (SOTA) performance compared to existing methods. Moreover, we confirm the generalizability of GradCoo in detecting unsafe prompts across a range of LLM base models with various sizes and origins.

cs.CL↗

arXiv2025

Diffusion Models for Computational Neuroimaging: A Survey

Computational neuroimaging involves analyzing brain images or signals to provide mechanistic insights and predictive tools for human cognition and behavior. While diffusion models have shown stability and high-quality generation in natural images, there is increasing interest in adapting them to analyze brain data for various neurological tasks such as data enhancement, disease diagnosis and brain decoding. This survey provides an overview of recent efforts to integrate diffusion models into computational neuroimaging. We begin by introducing the common neuroimaging data modalities, follow with the diffusion formulations and conditioning mechanisms. Then we discuss how the variations of the denoising starting point, condition input and generation target of diffusion models are developed and enhance specific neuroimaging tasks. For a comprehensive overview of the ongoing research, we provide a publicly available repository at https://github.com/JoeZhao527/dm4neuro.

cs.CV↗

arXiv2025

Superconductivity above 30 K due to the introduction of oxygen in CaFeAsF

Exploring new unconventional superconductors is of great value for both fundamental research and practical applications. It is a long-term challenge to develop and study more hole-doped superconductors in 1111 system of iron-based superconductors. Here we report the discovery of superconductivity with a critical transition temperature up to 30.7 K in the compound CaFeAsF by a post-annealing treatment in air atmosphere. The superconducting behaviors are verified in both the single-crystalline and polycrystalline samples by the resistance and magnetization measurements. The analysis by combining the depth-resolved time-of-flight secondary ion mass spectrometry (TOF-SIMS) and X-ray photoelectron spectroscopy (XPS) measurements shows that the introduction of oxygen elements and the consequent changing in Fe valence by the annealing treatment may lead to the hole-type doping, which is the origin for the occurrence of superconductivity. Our results pave the way for further in-depth investigations on the hole-doped 1111 system in iron-based superconductors.

cond-mat.supr-con↗

arXiv2025

LF-Steering: Latent Feature Activation Steering for Enhancing Semantic Consistency in Large Language Models

Large Language Models (LLMs) often generate inconsistent responses when prompted with semantically equivalent paraphrased inputs. Recently, activation steering, a technique that modulates LLMs' behaviours by adjusting their latent representations during inference time, has been explored to improve the semantic consistency of LLMs. However, these methods typically operate at the model component level, such as layer hidden states or attention head outputs. They face a challenge due to the ``polysemanticity issue'', where the model components of LLMs typically encode multiple entangled features, making precise steering difficult. To address this challenge, we drill down to feature-level representations and propose LF-Steering, a novel activation steering approach to precisely identify latent feature representations responsible for semantic inconsistency. More specifically, our method maps the hidden states of the relevant transformer layer into a sparsely activated, high-dimensional feature space based on a sparse autoencoder (SAE), ensuring model steering based on decoupled feature representations with minimal interference. Comprehensive experiments on NLU and NLG datasets demonstrate the effectiveness of our method in enhancing semantic consistency, resulting in significant performance gains for various NLU and NLG tasks.

cs.CL↗

arXiv2025

Enhancing Semantic Consistency of Large Language Models through Model Editing: An Interpretability-Oriented Approach

A Large Language Model (LLM) tends to generate inconsistent and sometimes contradictory outputs when presented with a prompt that has equivalent semantics but is expressed differently from the original prompt. To achieve semantic consistency of an LLM, one of the key approaches is to finetune the model with prompt-output pairs with semantically equivalent meanings. Despite its effectiveness, a data-driven finetuning method incurs substantial computation costs in data preparation and model optimization. In this regime, an LLM is treated as a ``black box'', restricting our ability to gain deeper insights into its internal mechanism. In this paper, we are motivated to enhance the semantic consistency of LLMs through a more interpretable method (i.e., model editing) to this end. We first identify the model components (i.e., attention heads) that have a key impact on the semantic consistency of an LLM. We subsequently inject biases into the output of these model components along the semantic-consistency activation direction. It is noteworthy that these modifications are cost-effective, without reliance on mass manipulations of the original model parameters. Through comprehensive experiments on the constructed NLU and open-source NLG datasets, our method demonstrates significant improvements in the semantic consistency and task performance of LLMs. Additionally, our method exhibits promising generalization capabilities by performing well on tasks beyond the primary tasks.

cs.CL↗