arXiv subjects

Wei Peng

Publications and source records attributed to Wei Peng.

At least 73 records · Page 4Linked to original sources

arXiv2024

EEG-DCNet: A Fast and Accurate MI-EEG Dilated CNN Classification Method

The electroencephalography (EEG)-based motor imagery (MI) classification is a critical and challenging task in brain-computer interface (BCI) technology, which plays a significant role in assisting patients with functional impairments to regain mobility. We present a novel multi-scale atrous convolutional neural network (CNN) model called EEG-dilated convolution network (DCNet) to enhance the accuracy and efficiency of the EEG-based MI classification tasks. We incorporate the $1\times1$ convolutional layer and utilize the multi-branch parallel atrous convolutional architecture in EEG-DCNet to capture the highly nonlinear characteristics and multi-scale features of the EEG signals. Moreover, we utilize the sliding window to enhance the temporal consistency and utilize the attension mechanism to improve the accuracy of recognizing user intentions. The experimental results (via the BCI-IV-2a ,BCI-IV-2b and the High-Gamma datasets) show that EEG-DCNet outperforms existing state-of-the-art (SOTA) approaches in terms of classification accuracy and Kappa scores. Furthermore, since EEG-DCNet requires less number of parameters, the training efficiency and memory consumption are also improved. The experiment code is open-sourced at \href{https://github.com/Kanyooo/EEG-DCNet}{here}.

eess.SP↗

arXiv2024

Efficiently and Effectively: A Two-stage Approach to Balance Plaintext and Encrypted Text for Traffic Classification

Encrypted traffic classification is the task of identifying the application or service associated with encrypted network traffic. One effective approach for this task is to use deep learning methods to encode the raw traffic bytes directly and automatically extract features for classification (byte-based models). However, current byte-based models input raw traffic bytes, whether plaintext or encrypted text, for automated feature extraction, neglecting the distinct impacts of plaintext and encrypted text on downstream tasks. Additionally, these models primarily focus on improving classification accuracy, with little emphasis on the efficiency of models. In this paper, for the first time, we analyze the impact of plaintext and encrypted text on the model's effectiveness and efficiency. Based on our observations and findings, we propose a two-phase approach to balance the trade-off between plaintext and encrypted text in traffic classification. Specifically, Stage one is to Determine whether the Plain text is enough to be accurately Classified (DPC) using the proposed DPC Selector. This stage quickly identifies samples that can be classified using plaintext, leveraging explicit byte features in plaintext to enhance model's efficiency. Stage two aims to adaptively make a classification with the result from stage one. This stage incorporates encrypted text information for samples that cannot be classified using plaintext alone, ensuring the model's effectiveness on traffic classification tasks. Experiments on two datasets demonstrate that our proposed model achieves state-of-the-art results in both effectiveness and efficiency.

cs.CR↗

arXiv2024

An Electoral Approach to Diversify LLM-based Multi-Agent Collective Decision-Making

Modern large language models (LLMs) have exhibited cooperative synergy on complex task-solving, and collective decision-making (CDM) is a pivotal component in LLM-based multi-agent collaboration frameworks. Our survey on 52 recent such systems uncovers a severe lack of diversity, with a heavy reliance on dictatorial and plurality voting for CDM. Through the lens of social choice theory, we scrutinize widely-adopted CDM methods and identify their limitations. To enrich current landscape of LLM-based CDM, we present GEDI, an electoral CDM module that incorporates various ordinal preferential voting mechanisms. Our empirical case study across three benchmarks shows that the integration of certain CDM methods can markedly improve the reasoning capabilities and robustness of some leading LLMs, all without requiring intricate system designs. Additionally, we find that some CDM mechanisms generate positive synergies even with as few as three agents. The voting-based methods also demonstrate robustness against single points of failure, as well as diversity in terms of hit-rate@k and subject-wise impacts.

cs.CL↗

arXiv2024

ORCHID: A Chinese Debate Corpus for Target-Independent Stance Detection and Argumentative Dialogue Summarization

Dialogue agents have been receiving increasing attention for years, and this trend has been further boosted by the recent progress of large language models (LLMs). Stance detection and dialogue summarization are two core tasks of dialogue agents in application scenarios that involve argumentative dialogues. However, research on these tasks is limited by the insufficiency of public datasets, especially for non-English languages. To address this language resource gap in Chinese, we present ORCHID (Oral Chinese Debate), the first Chinese dataset for benchmarking target-independent stance detection and debate summarization. Our dataset consists of 1,218 real-world debates that were conducted in Chinese on 476 unique topics, containing 2,436 stance-specific summaries and 14,133 fully annotated utterances. Besides providing a versatile testbed for future research, we also conduct an empirical study on the dataset and propose an integrated task. The results show the challenging nature of the dataset and suggest a potential of incorporating stance detection in summarization for argumentative dialogue.

cs.CL↗

arXiv2024

MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT Images

This paper introduces an innovative methodology for producing high-quality 3D lung CT images guided by textual information. While diffusion-based generative models are increasingly used in medical imaging, current state-of-the-art approaches are limited to low-resolution outputs and underutilize radiology reports' abundant information. The radiology reports can enhance the generation process by providing additional guidance and offering fine-grained control over the synthesis of images. Nevertheless, expanding text-guided generation to high-resolution 3D images poses significant memory and anatomical detail-preserving challenges. Addressing the memory issue, we introduce a hierarchical scheme that uses a modified UNet architecture. We start by synthesizing low-resolution images conditioned on the text, serving as a foundation for subsequent generators for complete volumetric data. To ensure the anatomical plausibility of the generated samples, we provide further guidance by generating vascular, airway, and lobular segmentation masks in conjunction with the CT images. The model demonstrates the capability to use textual input and segmentation tasks to generate synthesized images. The results of comparative assessments indicate that our approach exhibits superior performance compared to the most advanced models based on GAN and diffusion techniques, especially in accurately retaining crucial anatomical features such as fissure lines, airways, and vascular structures. This innovation introduces novel possibilities. This study focuses on two main objectives: (1) the development of a method for creating images based on textual prompts and anatomical components, and (2) the capability to generate new images conditioning on anatomical elements. The advancements in image generation can be applied to enhance numerous downstream tasks.

eess.IV↗

arXiv2024

Measuring the Inconsistency of Large Language Models in Preferential Ranking

Despite large language models' (LLMs) recent advancements, their bias and hallucination issues persist, and their ability to offer consistent preferential rankings remains underexplored. This study investigates the capacity of LLMs to provide consistent ordinal preferences, a crucial aspect in scenarios with dense decision space or lacking absolute answers. We introduce a formalization of consistency based on order theory, outlining criteria such as transitivity, asymmetry, reversibility, and independence from irrelevant alternatives. Our diagnostic experiments on selected state-of-the-art LLMs reveal their inability to meet these criteria, indicating a strong positional bias and poor transitivity, with preferences easily swayed by irrelevant alternatives. These findings highlight a significant inconsistency in LLM-generated preferential rankings, underscoring the need for further research to address these limitations.

cs.CL↗

arXiv2024

AgentBank: Towards Generalized LLM Agents via Fine-Tuning on 50000+ Interaction Trajectories

Fine-tuning on agent-environment interaction trajectory data holds significant promise for surfacing generalized agent capabilities in open-source large language models (LLMs). In this work, we introduce AgentBank, by far the largest trajectory tuning data collection featuring more than 50k diverse high-quality interaction trajectories which comprises 16 tasks covering five distinct agent skill dimensions. Leveraging a novel annotation pipeline, we are able to scale the annotated trajectories and generate a trajectory dataset with minimized difficulty bias. Furthermore, we fine-tune LLMs on AgentBank to get a series of agent models, Samoyed. Our comparative experiments demonstrate the effectiveness of scaling the interaction trajectory data to acquire generalized agent capabilities. Additional studies also reveal some key observations regarding trajectory tuning and agent skill generalization.

cs.CL↗

arXiv2024

LeFusion: Controllable Pathology Synthesis via Lesion-Focused Diffusion Models

Patient data from real-world clinical practice often suffers from data scarcity and long-tail imbalances, leading to biased outcomes or algorithmic unfairness. This study addresses these challenges by generating lesion-containing image-segmentation pairs from lesion-free images. Previous efforts in medical imaging synthesis have struggled with separating lesion information from background, resulting in low-quality backgrounds and limited control over the synthetic output. Inspired by diffusion-based image inpainting, we propose LeFusion, a lesion-focused diffusion model. By redesigning the diffusion learning objectives to focus on lesion areas, we simplify the learning process and improve control over the output while preserving high-fidelity backgrounds by integrating forward-diffused background contexts into the reverse diffusion process. Additionally, we tackle two major challenges in lesion texture synthesis: 1) multi-peak and 2) multi-class lesions. We introduce two effective strategies: histogram-based texture control and multi-channel decomposition, enabling the controlled generation of high-quality lesions in difficult scenarios. Furthermore, we incorporate lesion mask diffusion, allowing control over lesion size, location, and boundary, thus increasing lesion diversity. Validated on 3D cardiac lesion MRI and lung nodule CT datasets, LeFusion-generated data significantly improves the performance of state-of-the-art segmentation models, including nnUNet and SwinUNETR. Code and model are available at https://github.com/M3DV/LeFusion.

eess.IV↗

arXiv2024

A physics-driven sensor placement optimization methodology for temperature field reconstruction

Perceiving the global field from sparse sensors has been a grand challenge in the monitoring, analysis, and design of physical systems. In this context, sensor placement optimization is a crucial issue. Most existing works require large and sufficient data to construct data-based criteria, which are intractable in data-free scenarios without numerical and experimental data. To this end, we propose a novel physics-driven sensor placement optimization (PSPO) method for temperature field reconstruction using a physics-based criterion to optimize sensor locations. In our methodological framework, we firstly derive the theoretical upper and lower bounds of the reconstruction error under noise scenarios by analyzing the optimal solution, proving that error bounds correlate with the condition number determined by sensor locations. Furthermore, the condition number, as the physics-based criterion, is used to optimize sensor locations by the genetic algorithm. Finally, the best sensors are validated by reconstruction models, including non-invasive end-to-end models, non-invasive reduced-order models, and physics-informed models. Experimental results, both on a numerical and an application case, demonstrate that the PSPO method significantly outperforms random and uniform selection methods, improving the reconstruction accuracy by nearly an order of magnitude. Moreover, the PSPO method can achieve comparable reconstruction accuracy to the existing data-driven placement optimization methods.

cs.LG↗

arXiv2024

Watch Every Step! LLM Agent Learning via Iterative Step-Level Process Refinement

Large language model agents have exhibited exceptional performance across a range of complex interactive tasks. Recent approaches have utilized tuning with expert trajectories to enhance agent performance, yet they primarily concentrate on outcome rewards, which may lead to errors or suboptimal actions due to the absence of process supervision signals. In this paper, we introduce the Iterative step-level Process Refinement (IPR) framework, which provides detailed step-by-step guidance to enhance agent training. Specifically, we adopt the Monte Carlo method to estimate step-level rewards. During each iteration, the agent explores along the expert trajectory and generates new actions. These actions are then evaluated against the corresponding step of expert trajectory using step-level rewards. Such comparison helps identify discrepancies, yielding contrastive action pairs that serve as training data for the agent. Our experiments on three complex agent tasks demonstrate that our framework outperforms a variety of strong baselines. Moreover, our analytical findings highlight the effectiveness of IPR in augmenting action efficiency and its applicability to diverse models.

cs.CL↗

arXiv2024

Brain-Cognition Fingerprinting via Graph-GCCA with Contrastive Learning

Many longitudinal neuroimaging studies aim to improve the understanding of brain aging and diseases by studying the dynamic interactions between brain function and cognition. Doing so requires accurate encoding of their multidimensional relationship while accounting for individual variability over time. For this purpose, we propose an unsupervised learning model (called \underline{\textbf{Co}}ntrastive Learning-based \underline{\textbf{Gra}}ph Generalized \underline{\textbf{Ca}}nonical Correlation Analysis (CoGraCa)) that encodes their relationship via Graph Attention Networks and generalized Canonical Correlational Analysis. To create brain-cognition fingerprints reflecting unique neural and cognitive phenotype of each person, the model also relies on individualized and multimodal contrastive learning. We apply CoGraCa to longitudinal dataset of healthy individuals consisting of resting-state functional MRI and cognitive measures acquired at multiple visits for each participant. The generated fingerprints effectively capture significant individual differences and outperform current single-modal and CCA-based multimodal models in identifying sex and age. More importantly, our encoding provides interpretable interactions between those two modalities.

cs.CV↗

arXiv2024

Evaluating General Purpose Vision Foundation Models for Medical Image Analysis: An Experimental Study of DINOv2 on Radiology Benchmarks

The integration of deep learning systems into healthcare has been hindered by the resource-intensive process of data annotation and the inability of these systems to generalize to different data distributions. Foundation models, which are models pre-trained on large datasets, have emerged as a solution to reduce reliance on annotated data and enhance model generalizability and robustness. DINOv2 is an open-source foundation model pre-trained with self-supervised learning on 142 million curated natural images that exhibits promising capabilities across various vision tasks. Nevertheless, a critical question remains unanswered regarding DINOv2's adaptability to radiological imaging, and whether its features are sufficiently general to benefit radiology image analysis. Therefore, this study comprehensively evaluates the performance DINOv2 for radiology, conducting over 200 evaluations across diverse modalities (X-ray, CT, and MRI). To measure the effectiveness and generalizability of DINOv2's feature representations, we analyze the model across medical image analysis tasks including disease classification and organ segmentation on both 2D and 3D images, and under different settings like kNN, few-shot learning, linear-probing, end-to-end fine-tuning, and parameter-efficient fine-tuning. Comparative analyses with established supervised, self-supervised, and weakly-supervised models reveal DINOv2's superior performance and cross-task generalizability. The findings contribute insights to potential avenues for optimizing pre-training strategies for medical imaging and enhancing the broader understanding of DINOv2's role in bridging the gap between natural and radiological image analysis. Our code is available at https://github.com/MohammedSB/DINOv2ForRadiology

cs.CV↗

arXiv2024

Evaluating the Quality of Brain MRI Generators

Deep learning models generating structural brain MRIs have the potential to significantly accelerate discovery of neuroscience studies. However, their use has been limited in part by the way their quality is evaluated. Most evaluations of generative models focus on metrics originally designed for natural images (such as structural similarity index and Frechet inception distance). As we show in a comparison of 6 state-of-the-art generative models trained and tested on over 3000 MRIs, these metrics are sensitive to the experimental setup and inadequately assess how well brain MRIs capture macrostructural properties of brain regions (i.e., anatomical plausibility). This shortcoming of the metrics results in inconclusive findings even when qualitative differences between the outputs of models are evident. We therefore propose a framework for evaluating models generating brain MRIs, which requires uniform processing of the real MRIs, standardizing the implementation of the models, and automatically segmenting the MRIs generated by the models. The segmentations are used for quantifying the plausibility of anatomy displayed in the MRIs. To ensure meaningful quantification, it is crucial that the segmentations are highly reliable. Our framework rigorously checks this reliability, a step often overlooked by prior work. Only 3 of the 6 generative models produced MRIs, of which at least 95% had highly reliable segmentations. More importantly, the assessment of each model by our framework is in line with qualitative assessments, reinforcing the validity of our approach.

eess.IV↗

arXiv2024

From weak to strong-coupling superconductivity tuned by substrate in TiN films

The interplay between substrates and superconducting thin films has attracted increasing attention. Here, we report an in-depth investigation on superconducting properties of the epitaxial TiN thin films grown on three different substrates by dc reactive magnetron sputtering. The TiN films grown on (0001) sapphire exhibit (111) crystal orientation, while that grown on (100) Si and MgO substrates exhibit (100) orientation. Moreover, the samples grown on Si reveal a relatively lower level of disorder, accompanied by the higher critical transition temperature $T_c$ and smaller magnitude of upper critical field slope near $T_c$. Remarkably, we uncovered a rather high value of superconducting gap (with $Δ_0/k_BT_c$ = 3.05) in TiN film on Si indicating a very strong coupling superconductivity, in sharp contrast to the case using sapphires and MgO as the substrate which reveals a weak-coupling feature. The comprehensive analysis considering the scenarios of the three substrate shows that the grain size of the thin films may be an important factor influencing the superconductivity.

cond-mat.supr-con↗

arXiv2024

HeteroMorpheus: Universal Control Based on Morphological Heterogeneity Modeling

In the field of robotic control, designing individual controllers for each robot leads to high computational costs. Universal control policies, applicable across diverse robot morphologies, promise to mitigate this challenge. Predominantly, models based on Graph Neural Networks (GNN) and Transformers are employed, owing to their effectiveness in capturing relational dynamics across a robot's limbs. However, these models typically employ homogeneous graph structures that overlook the functional diversity of different limbs. To bridge this gap, we introduce HeteroMorpheus, a novel method based on heterogeneous graph Transformer. This method uniquely addresses limb heterogeneity, fostering better representation of robot dynamics of various morphologies. Through extensive experiments we demonstrate the superiority of HeteroMorpheus against state-of-the-art methods in the capability of policy generalization, including zero-shot generalization and sample-efficient transfer to unfamiliar robot morphologies.

cs.RO↗

arXiv2024

Transformer-based Single-Cell Language Model: A Survey

The transformers have achieved significant accomplishments in the natural language processing as its outstanding parallel processing capabilities and highly flexible attention mechanism. In addition, increasing studies based on transformers have been proposed to model single-cell data. In this review, we attempt to systematically summarize the single-cell language models and applications based on transformers. First, we provide a detailed introduction about the structure and principles of transformers. Then, we review the single-cell language models and large language models for single-cell data analysis. Moreover, we explore the datasets and applications of single-cell language models in downstream tasks such as batch correction, cell clustering, cell type annotation, gene regulatory network inference and perturbation response. Further, we discuss the challenges of single-cell language models and provide promising research directions. We hope this review will serve as an up-to-date reference for researchers interested in the direction of single-cell language models.

cs.CL↗

arXiv2024

Large language models in healthcare and medical domain: A review

The deployment of large language models (LLMs) within the healthcare sector has sparked both enthusiasm and apprehension. These models exhibit the remarkable capability to provide proficient responses to free-text queries, demonstrating a nuanced understanding of professional medical knowledge. This comprehensive survey delves into the functionalities of existing LLMs designed for healthcare applications, elucidating the trajectory of their development, starting from traditional Pretrained Language Models (PLMs) to the present state of LLMs in healthcare sector. First, we explore the potential of LLMs to amplify the efficiency and effectiveness of diverse healthcare applications, particularly focusing on clinical language understanding tasks. These tasks encompass a wide spectrum, ranging from named entity recognition and relation extraction to natural language inference, multi-modal medical applications, document classification, and question-answering. Additionally, we conduct an extensive comparison of the most recent state-of-the-art LLMs in the healthcare domain, while also assessing the utilization of various open-source LLMs and highlighting their significance in healthcare applications. Furthermore, we present the essential performance metrics employed to evaluate LLMs in the biomedical domain, shedding light on their effectiveness and limitations. Finally, we summarize the prominent challenges and constraints faced by large language models in the healthcare sector, offering a holistic perspective on their potential benefits and shortcomings. This review provides a comprehensive exploration of the current landscape of LLMs in healthcare, addressing their role in transforming medical applications and the areas that warrant further research and development.

cs.CL↗

arXiv2024

Coexistence of ferromagnetism and superconductivity at KTaO$_3$ heterointerfaces

The coexistence of superconductivity and ferromagnetism is a long-standing issue in superconductivity due to the antagonistic nature of these two ordered states. Experimentally identifying and characterizing novel heterointerface superconductors that coexist with magnetism presents significant challenges. Here, we report the experimental observation of two-dimensional long-range ferromagnetic order in the KTaO$_3$ heterointerface superconductor, showing the coexistence of superconductivity and ferromagnetism. Remarkably, our direct current superconducting quantum interference device measurements reveal an in-plane magnetization hysteresis loop persisting above room temperature. Moreover, the first-principles calculations and X-ray magnetic circular dichroism measurements provide decisive insights into the origin of the observed robust ferromagnetism, attributing it to oxygen vacancies that localize electrons in nearby Ta 5$d$ states. Our findings not only suggest KTaO$_3$ heterointerfaces as time-reversal symmetry breaking superconductors, but also inject fresh momentum into the exploration of the intricate interplay between superconductivity and magnetism, enhanced by the strong spin-orbit coupling inherent to the heavy Ta in 5$d$ orbitals of KTaO$_3$ heterointerfaces.

cond-mat.supr-con↗