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Wenwen Li

Publications and source records attributed to Wenwen Li.

At least 55 records · Page 3Linked to original sources

DaYu: Data-Driven Model for Geostationary Satellite Observed Cloud Images Forecasting

In the past few years, Artificial Intelligence (AI)-based weather forecasting methods have widely demonstrated strong competitiveness among the weather forecasting systems. However, these methods are insufficient for high-spatial-resolution short-term nowcasting within 6 hours, which is crucial for warning short-duration, mesoscale and small-scale weather events. Geostationary satellite remote sensing provides detailed, high spatio-temporal and all-day observations, which can address the above limitations of existing methods. Therefore, this paper proposed an advanced data-driven thermal infrared cloud images forecasting model, "DaYu." Unlike existing data-driven weather forecasting models, DaYu is specifically designed for geostationary satellite observations, with a temporal resolution of 0.5 hours and a spatial resolution of ${0.05}^\circ$ $\times$ ${0.05}^\circ$. DaYu is based on a large-scale transformer architecture, which enables it to capture fine-grained cloud structures and learn fast-changing spatio-temporal evolution features effectively. Moreover, its attention mechanism design achieves a balance in computational complexity, making it practical for applications. DaYu not only achieves accurate forecasts up to 3 hours with a correlation coefficient higher than 0.9, 6 hours higher than 0.8, and 12 hours higher than 0.7, but also detects short-duration, mesoscale, and small-scale weather events with enhanced detail, effectively addressing the shortcomings of existing methods in providing detailed short-term nowcasting within 6 hours. Furthermore, DaYu has significant potential in short-term climate disaster prevention and mitigation.

physics.ao-ph↗

Geometric Feature Enhanced Knowledge Graph Embedding and Spatial Reasoning

Geospatial Knowledge Graphs (GeoKGs) model geoentities (e.g., places and natural features) and spatial relationships in an interconnected manner, providing strong knowledge support for geographic applications, including data retrieval, question-answering, and spatial reasoning. However, existing methods for mining and reasoning from GeoKGs, such as popular knowledge graph embedding (KGE) techniques, lack geographic awareness. This study aims to enhance general-purpose KGE by developing new strategies and integrating geometric features of spatial relations, including topology, direction, and distance, to infuse the embedding process with geographic intuition. The new model is tested on downstream link prediction tasks, and the results show that the inclusion of geometric features, particularly topology and direction, improves prediction accuracy for both geoentities and spatial relations. Our research offers new perspectives for integrating spatial concepts and principles into the GeoKG mining process, providing customized GeoAI solutions for geospatial challenges.

cs.AI↗

The KnowWhereGraph Ontology

KnowWhereGraph is one of the largest fully publicly available geospatial knowledge graphs. It includes data from 30 layers on natural hazards (e.g., hurricanes, wildfires), climate variables (e.g., air temperature, precipitation), soil properties, crop and land-cover types, demographics, and human health, various place and region identifiers, among other themes. These have been leveraged through the graph by a variety of applications to address challenges in food security and agricultural supply chains; sustainability related to soil conservation practices and farm labor; and delivery of emergency humanitarian aid following a disaster. In this paper, we introduce the ontology that acts as the schema for KnowWhereGraph. This broad overview provides insight into the requirements and design specifications for the graph and its schema, including the development methodology (modular ontology modeling) and the resources utilized to implement, materialize, and deploy KnowWhereGraph with its end-user interfaces and public query SPARQL endpoint.

cs.AI↗

Pervasive impact of spatial dependence on predictability

Understanding the complex nature of spatial information is crucial for problem solving in social and environmental sciences. This study investigates how the underlying patterns of spatial data can significantly influence the outcomes of spatial predictions. Recognizing unique characteristics of spatial data, such as spatial dependence and spatial heterogeneity, we delve into the fundamental differences and similarities between spatial and non-geospatial prediction models. Through the analysis of six different datasets of environment and socio-economic variables, comparing geospatial models with non-geospatial models, our research highlights the pervasive nature of spatial dependence beyond geographical boundaries. This innovative approach not only recognizes spatial dependence in geographic spaces defined by latitude and longitude but also identifies its presence in non-geographic, attribute-based dimensions. Our findings reveal the pervasive influence of spatial dependence on prediction outcomes across various domains, and spatial dependence significantly influences prediction performance across all spaces. Our findings suggest that the strongest spatial dependence is typically found in geographic space for environment variables, a trend that does not uniformly apply to socio-economic variables. This investigation not only advances the theoretical framework for spatial data analysis, but also proposes new methodologies for accurately capturing and expressing spatial dependence under complex conditions. Our research extends spatial analysis to non-geographic dimensions such as social networks and gene expression patterns, emphasizing the role of spatial dependence in improving prediction accuracy, thereby supporting interdisciplinary applications across fields such as geographic information science, environmental science, economics, sociology, and bioinformatics.

physics.soc-ph↗

Dielectric Tensor Prediction for Inorganic Materials Using Latent Information from Preferred Potential

Dielectrics are crucial for technologies like flash memory, CPUs, photovoltaics, and capacitors, but public data on these materials are scarce, restricting research and development. Existing machine learning models have focused on predicting scalar polycrystalline dielectric constants, neglecting the directional nature of dielectric tensors essential for material design. This study leverages multi-rank equivariant structural embeddings from a universal neural network potential to enhance predictions of dielectric tensors. We develop an equivariant readout decoder to predict total, electronic, and ionic dielectric tensors while preserving O(3) equivariance, and benchmark its performance against state-of-the-art algorithms. Virtual screening of thermodynamically stable materials from Materials Project for two discovery tasks, high-dielectric and highly anisotropic materials, identifies promising candidates including Cs2Ti(WO4)3 (band gap $E_g=2.93 \mathrm{eV}$, dielectric constant $\varepsilon=180.90$) and CsZrCuSe3 (anisotropic ratio $α_r = 121.89$). The results demonstrate our model's accuracy in predicting dielectric tensors and its potential for discovering novel dielectric materials.

cond-mat.mtrl-sci↗

Geospatial foundation models for image analysis: evaluating and enhancing NASA-IBM Prithvi's domain adaptability

Research on geospatial foundation models (GFMs) has become a trending topic in geospatial artificial intelligence (AI) research due to their potential for achieving high generalizability and domain adaptability, reducing model training costs for individual researchers. Unlike large language models, such as ChatGPT, constructing visual foundation models for image analysis, particularly in remote sensing, encountered significant challenges such as formulating diverse vision tasks into a general problem framework. This paper evaluates the recently released NASA-IBM GFM Prithvi for its predictive performance on high-level image analysis tasks across multiple benchmark datasets. Prithvi was selected because it is one of the first open-source GFMs trained on time-series of high-resolution remote sensing imagery. A series of experiments were designed to assess Prithvi's performance as compared to other pre-trained task-specific AI models in geospatial image analysis. New strategies, including band adaptation, multi-scale feature generation, and fine-tuning techniques, are introduced and integrated into an image analysis pipeline to enhance Prithvi's domain adaptation capability and improve model performance. In-depth analyses reveal Prithvi's strengths and weaknesses, offering insights for both improving Prithvi and developing future visual foundation models for geospatial tasks.

cs.CV↗

Pre-processing and quality control of large clinical CT head datasets for intracranial arterial calcification segmentation

As a potential non-invasive biomarker for ischaemic stroke, intracranial arterial calcification (IAC) could be used for stroke risk assessment on CT head scans routinely acquired for other reasons (e.g. trauma, confusion). Artificial intelligence methods can support IAC scoring, but they have not yet been developed for clinical imaging. Large heterogeneous clinical CT datasets are necessary for the training of such methods, but they exhibit expected and unexpected data anomalies. Using CTs from a large clinical trial, the third International Stroke Trial (IST-3), we propose a pipeline that uses as input non-enhanced CT scans to output regions of interest capturing selected large intracranial arteries for IAC scoring. Our method uses co-registration with templates. We focus on quality control, using information presence along the z-axis of the imaging to group and apply similarity measures (structural similarity index measure) to triage assessment of individual image series. Additionally, we propose superimposing thresholded binary masks of the series to inspect large quantities of data in parallel. We identify and exclude unrecoverable samples and registration failures. In total, our pipeline processes 10,659 CT series, rejecting 4,322 (41%) in the entire process, 1,450 (14% of the total) during quality control, and outputting 6,337 series. Our pipeline enables effective and efficient region of interest localisation for targeted IAC segmentation.

eess.IV↗

Improving Interpretability of Deep Active Learning for Flood Inundation Mapping Through Class Ambiguity Indices Using Multi-spectral Satellite Imagery

Flood inundation mapping is a critical task for responding to the increasing risk of flooding linked to global warming. Significant advancements of deep learning in recent years have triggered its extensive applications, including flood inundation mapping. To cope with the time-consuming and labor-intensive data labeling process in supervised learning, deep active learning strategies are one of the feasible approaches. However, there remains limited exploration into the interpretability of how deep active learning strategies operate, with a specific focus on flood inundation mapping in the field of remote sensing. In this study, we introduce a novel framework of Interpretable Deep Active Learning for Flood inundation Mapping (IDAL-FIM), specifically in terms of class ambiguity of multi-spectral satellite images. In the experiments, we utilize Sen1Floods11 dataset, and adopt U-Net with MC-dropout. In addition, we employ five acquisition functions, which are the random, K-means, BALD, entropy, and margin acquisition functions. Based on the experimental results, we demonstrate that two proposed class ambiguity indices are effective variables to interpret the deep active learning by establishing statistically significant correlation with the predictive uncertainty of the deep learning model at the tile level. Then, we illustrate the behaviors of deep active learning through visualizing two-dimensional density plots and providing interpretations regarding the operation of deep active learning, in flood inundation mapping.

cs.CV↗

GeoAI Reproducibility and Replicability: a computational and spatial perspective

GeoAI has emerged as an exciting interdisciplinary research area that combines spatial theories and data with cutting-edge AI models to address geospatial problems in a novel, data-driven manner. While GeoAI research has flourished in the GIScience literature, its reproducibility and replicability (R&R), fundamental principles that determine the reusability, reliability, and scientific rigor of research findings, have rarely been discussed. This paper aims to provide an in-depth analysis of this topic from both computational and spatial perspectives. We first categorize the major goals for reproducing GeoAI research, namely, validation (repeatability), learning and adapting the method for solving a similar or new problem (reproducibility), and examining the generalizability of the research findings (replicability). Each of these goals requires different levels of understanding of GeoAI, as well as different methods to ensure its success. We then discuss the factors that may cause the lack of R&R in GeoAI research, with an emphasis on (1) the selection and use of training data; (2) the uncertainty that resides in the GeoAI model design, training, deployment, and inference processes; and more importantly (3) the inherent spatial heterogeneity of geospatial data and processes. We use a deep learning-based image analysis task as an example to demonstrate the results' uncertainty and spatial variance caused by different factors. The findings reiterate the importance of knowledge sharing, as well as the generation of a "replicability map" that incorporates spatial autocorrelation and spatial heterogeneity into consideration in quantifying the spatial replicability of GeoAI research.

cs.CV↗

Polarized Adding Method of Discrete Ordinate Approximation for Ultraviolet-Visible and Near-Infrared Radiative Transfer

The polarization characteristics of atmospheric scattering are important and should not be ignored in radiative transfer simulations. In this study, a new vector radiative transfer model called the polarized adding method of discrete ordinate approximation (POLDDA) is proposed for use in remote sensing applications for ultraviolet-visible and near-infrared spectra. The single-layer radiative transfer process and inhomogeneous multi-layer connection are solved using the discrete ordinate method (DOM) and adding methods, respectively. By combining the advantages of DOM and the adding method, the Stokes vector (including the I-, Q-, U-, and V-components) calculated using the new method conforms to the results of PolRadtran/RT3, whether in a Rayleigh scattering atmosphere or the water cloud case. Moreover, the relative root-mean-square error (RMSE) values of the Stokes vector for the test cases between MYSTIC and the new method or RT3 prove the accuracy of the proposed method. Meanwhile, the new method has a higher computational efficiency than RT3, particularly for an atmosphere with a large scattering optical depth. Unlike RT3, the computation time of the proposed method does not increase with the optical depth of each layer.

physics.ao-ph↗

Image-based retrieval of all-day cloud physical parameters for FY4A/AGRI and its application over the Tibetan Plateau

Satellite remote sensing serves as a crucial means to acquire cloud physical parameters. However, existing official cloud products derived from the advanced geostationary radiation imager (AGRI) onboard the Fengyun-4A geostationary satellite suffer from limitations in computational precision and efficiency. In this study, an image-based transfer learning model (ITLM) was developed to realize all-day and high-precision retrieval of cloud physical parameters using AGRI thermal infrared measurements and auxiliary data. Combining the observation advantages of geostationary and polar-orbiting satellites, ITLM was pre-trained and transfer-trained with official cloud products from advanced Himawari imager (AHI) and Moderate Resolution Imaging Spectroradiometer (MODIS), respectively. Taking official MODIS products as the benchmarks, ITLM achieved an overall accuracy of 79.93% for identifying cloud phase and root mean squared errors of 1.85 km, 6.72 um, and 12.79 for estimating cloud top height, cloud effective radius, and cloud optical thickness, outperforming the precision of official AGRI and AHI products. Compared to the pixel-based random forest model, ITLM utilized the spatial information of clouds to significantly improve the retrieval performance and achieve more than a 6-fold increase in speed for a single full-disk retrieval. Moreover, the AGRI ITLM products with spatiotemporal continuity and high precision were used to accurately describe the spatial distribution characteristics of cloud fractions and cloud properties over the Tibetan Plateau (TP) during both daytime and nighttime, and for the first time provide insights into the diurnal variation of cloud cover and cloud properties for total clouds and deep convective clouds across different seasons.

eess.SP↗

A2CI: A Cloud-based, Service-oriented Geospatial Cyberinfrastructure to Support Atmospheric Research

Big earth science data offers the scientific community great opportunities. Many more studies at large-scales, over long-terms and at high resolution can now be conducted using the rich information collected by remote sensing satellites, ground-based sensor networks, and even social media input. However, the hundreds of terabytes of information collected and compiled on an hourly basis by NASA and other government agencies present a significant challenge for atmospheric scientists seeking to improve the understanding of the Earth atmospheric system. These challenges include effective discovery, organization, analysis and visualization of large amounts of data. This paper reports the outcomes of an NSF-funded project that developed a geospatial cyberinfrastructure -- the A2CI (Atmospheric Analysis Cyberinfrastructure) -- to support atmospheric research. We first introduce the service-oriented system framework then describe in detail the implementation of the data discovery module, data management module, data integration module, data analysis and visualization modules following the cloud computing principles-Data-as-a-Service, Software-as-a-Service, Platform-as-a-Service and Infrastructure-as-a-Service. We demonstrate the graphic user interface by performing an analysis between Sea Surface Temperature and the intensity of tropical storms in the North Atlantic and Pacific oceans. We expect this work to contribute to the technical advancement of cyberinfrastructure research as well as to the development of an online, collaborative scientific analysis system for atmospheric science.

cs.CY↗

Segment Anything Model Can Not Segment Anything: Assessing AI Foundation Model's Generalizability in Permafrost Mapping

This paper assesses trending AI foundation models, especially emerging computer vision foundation models and their performance in natural landscape feature segmentation. While the term foundation model has quickly garnered interest from the geospatial domain, its definition remains vague. Hence, this paper will first introduce AI foundation models and their defining characteristics. Built upon the tremendous success achieved by Large Language Models (LLMs) as the foundation models for language tasks, this paper discusses the challenges of building foundation models for geospatial artificial intelligence (GeoAI) vision tasks. To evaluate the performance of large AI vision models, especially Meta's Segment Anything Model (SAM), we implemented different instance segmentation pipelines that minimize the changes to SAM to leverage its power as a foundation model. A series of prompt strategies was developed to test SAM's performance regarding its theoretical upper bound of predictive accuracy, zero-shot performance, and domain adaptability through fine-tuning. The analysis used two permafrost feature datasets, ice-wedge polygons and retrogressive thaw slumps because (1) these landform features are more challenging to segment than manmade features due to their complicated formation mechanisms, diverse forms, and vague boundaries; (2) their presence and changes are important indicators for Arctic warming and climate change. The results show that although promising, SAM still has room for improvement to support AI-augmented terrain mapping. The spatial and domain generalizability of this finding is further validated using a more general dataset EuroCrop for agricultural field mapping. Finally, we discuss future research directions that strengthen SAM's applicability in challenging geospatial domains.

cs.CV↗

GeoAI in Social Science

GeoAI, or geospatial artificial intelligence, is an exciting new area that leverages artificial intelligence (AI), geospatial big data, and massive computing power to solve problems with high automation and intelligence. This paper reviews the progress of AI in social science research, highlighting important advancements in using GeoAI to fill critical data and knowledge gaps. It also discusses the importance of breaking down data silos, accelerating convergence among GeoAI research methods, as well as moving GeoAI beyond geospatial benefits.

cs.CY↗

Assessment of a new GeoAI foundation model for flood inundation mapping

Vision foundation models are a new frontier in Geospatial Artificial Intelligence (GeoAI), an interdisciplinary research area that applies and extends AI for geospatial problem solving and geographic knowledge discovery, because of their potential to enable powerful image analysis by learning and extracting important image features from vast amounts of geospatial data. This paper evaluates the performance of the first-of-its-kind geospatial foundation model, IBM-NASA's Prithvi, to support a crucial geospatial analysis task: flood inundation mapping. This model is compared with convolutional neural network and vision transformer-based architectures in terms of mapping accuracy for flooded areas. A benchmark dataset, Sen1Floods11, is used in the experiments, and the models' predictability, generalizability, and transferability are evaluated based on both a test dataset and a dataset that is completely unseen by the model. Results show the good transferability of the Prithvi model, highlighting its performance advantages in segmenting flooded areas in previously unseen regions. The findings also indicate areas for improvement for the Prithvi model in terms of adopting multi-scale representation learning, developing more end-to-end pipelines for high-level image analysis tasks, and offering more flexibility in terms of input data bands.

cs.CV↗

Persistent Homology of Configuration Spaces of Trees

Multiparameter persistence modules come up naturally in topological data analysis and topological robotics. Given a metric graph $(X,δ)$, the second configuration space of $(X,δ)$ with proximity parameters (for example, the minimum distance allowed between each pair of robots) can be interpreted as a collection of all possible configurations of two robots moving in $(X,δ)$. In this project, we study the $2$-parameter persistence modules associated with the second configuration spaces of the star graph ($\mathsf{Star}_k$, $k\geq 3$) and the generalized H-graph ($\mathcal{H}_{m,n}$, $m,n\geq 3$) with the edge length parameter $L_e$ and the restraint parameter $r$. Moreover, we provide the indecomposable direct summands for each persistence module.

math.AT↗

Development of a Deep Learning Method to Identify Acute Ischemic Stroke Lesions on Brain CT

Computed Tomography (CT) is commonly used to image acute ischemic stroke (AIS) patients, but its interpretation by radiologists is time-consuming and subject to inter-observer variability. Deep learning (DL) techniques can provide automated CT brain scan assessment, but usually require annotated images. Aiming to develop a DL method for AIS using labelled but not annotated CT brain scans from patients with AIS, we designed a convolutional neural network-based DL algorithm using routinely-collected CT brain scans from the Third International Stroke Trial (IST-3), which were not acquired using strict research protocols. The DL model aimed to detect AIS lesions and classify the side of the brain affected. We explored the impact of AIS lesion features, background brain appearances, and timing on DL performance. From 5772 unique CT scans of 2347 AIS patients (median age 82), 54% had visible AIS lesions according to expert labelling. Our best-performing DL method achieved 72% accuracy for lesion presence and side. Lesions that were larger (80% accuracy) or multiple (87% accuracy for two lesions, 100% for three or more), were better detected. Follow-up scans had 76% accuracy, while baseline scans 67% accuracy. Chronic brain conditions reduced accuracy, particularly non-stroke lesions and old stroke lesions (32% and 31% error rates respectively). DL methods can be designed for AIS lesion detection on CT using the vast quantities of routinely-collected CT brain scan data. Ultimately, this should lead to more robust and widely-applicable methods.

eess.IV↗

Challenges of building medical image datasets for development of deep learning software in stroke

Despite the large amount of brain CT data generated in clinical practice, the availability of CT datasets for deep learning (DL) research is currently limited. Furthermore, the data can be insufficiently or improperly prepared for machine learning and thus lead to spurious and irreproducible analyses. This lack of access to comprehensive and diverse datasets poses a significant challenge for the development of DL algorithms. In this work, we propose a complete semi-automatic pipeline to address the challenges of preparing a clinical brain CT dataset for DL analysis and describe the process of standardising this heterogeneous dataset. Challenges include handling image sets with different orientations (axial, sagittal, coronal), different image types (to view soft tissues or bones) and dimensions, and removing redundant background. The final pipeline was able to process 5,868/10,659 (45%) CT image datasets. Reasons for rejection include non-axial data (n=1,920), bone reformats (n=687), separated skull base/vault images (n=1,226), and registration failures (n=465). Further format adjustments, including image cropping, resizing and scaling are also needed for DL processing. Of the axial scans that were not localisers, bone reformats or split brains, 5,868/6,333 (93%) were accepted, while the remaining 465 failed the registration process. Appropriate preparation of medical imaging datasets for DL is a costly and time-intensive process.

eess.IV↗