arXiv subjects

Xiaofeng Liu

Publications and source records attributed to Xiaofeng Liu.

At least 55 records · Page 3Linked to original sources

arXiv2026

Three-Dimensional MRI Reconstruction with Gaussian Representations: Tackling the Undersampling Problem

Three-Dimensional Gaussian Splatting (3DGS) has shown substantial promise in the field of computer vision, but remains unexplored in the field of magnetic resonance imaging (MRI). This study explores its potential for the reconstruction of isotropic resolution 3D MRI from undersampled k-space data. We introduce a novel framework termed 3D Gaussian MRI (3DGSMR), which employs 3D Gaussian distributions as an explicit representation for MR volumes. Experimental evaluations indicate that this method can effectively reconstruct voxelized MR images, achieving a quality on par with that of well-established 3D MRI reconstruction techniques found in the literature. Notably, the 3DGSMR scheme operates under a self-supervised framework, obviating the need for extensive training datasets or prior model training. This approach introduces significant innovations to the domain, notably the adaptation of 3DGS to MRI reconstruction and the novel application of the existing 3DGS methodology to decompose MR signals, which are presented in a complex-valued format.

eess.IV↗

arXiv2026

Unsupervised Adaptation from FDG to PSMA PET/CT for 3D Lesion Detection under Label Shift

In this work, we propose an unsupervised domain adaptation (UDA) framework for 3D volumetric lesion detection that adapts a detector trained on labeled FDG PET/CT to unlabeled PSMA PET/CT. Beyond covariate shift, cross tracer adaptation also exhibits label shift in both lesion size composition and the number of lesions per subject. We introduce self-training with two mechanisms that explicitly model and compensate for this label shift. First, we adaptively adjust the detection anchor shapes by re-estimating target domain box scales from selected pseudo labels and updating anchors with an exponential moving average. This increases positive anchor coverage for small PSMA lesions and stabilizes box regression. Second, instead of a fixed confidence threshold for pseudo-label selection, we allocate size bin-wise quotas according to the estimated target domain histogram over lesion volumes. The self-training alternates between supervised learning with prior-guided pseudo labeling on PSMA and supervised learning on labeled FDG. On AutoPET 2024, adapting from 501 labeled FDG studies to 369 $^{18}$F-PSMA studies, the proposed method improves both AP and FROC over the source-only baseline and conventional self-training without label-shift mitigation, indicating that modeling target lesion prevalence and size composition is an effective path to robust cross-tracer detection.

eess.IV↗

arXiv2026

Multimodal MRI Report Findings Supervised Brain Lesion Segmentation with Substructures

Report-supervised (RSuper) learning seeks to alleviate the need for dense tumor voxel labels with constraints derived from radiology reports (e.g., volumes, counts, sizes, locations). In MRI studies of brain tumors, however, we often involve multi-parametric scans and substructures. Here, fine-grained modality/parameter-wise reports are usually provided along with global findings and are correlated with different substructures. Moreover, the reports often describe only the largest lesion and provide qualitative or uncertain cues (``mild,'' ``possible''). Classical RSuper losses (e.g., sum volume consistency) can over-constrain or hallucinate unreported findings under such incompleteness, and are unable to utilize these hierarchical findings or exploit the priors of varied lesion types in a merged dataset. We explicitly parse the global quantitative and modality-wise qualitative findings and introduce a unified, one-sided, uncertainty-aware formulation (MS-RSuper) that: (i) aligns modality-specific qualitative cues (e.g., T1c enhancement, FLAIR edema) with their corresponding substructures using existence and absence losses; (ii) enforces one-sided lower-bounds for partial quantitative cues (e.g., largest lesion size, minimal multiplicity); and (iii) adds extra- vs. intra-axial anatomical priors to respect cohort differences. Certainty tokens scale penalties; missing cues are down-weighted. On 1238 report-labeled BraTS-MET/MEN scans, our MS-RSuper largely outperforms both a sparsely-supervised baseline and a naive RSuper method.

eess.IV↗

arXiv2026

SelfAI: A self-directed framework for long-horizon scientific discovery

Scientific discovery increasingly entails long-horizon exploration of complex hypothesis spaces, yet most existing approaches emphasize final performance while offering limited insight into how scientific exploration unfolds over time, particularly balancing efficiency-diversity trade-offs and supporting reproducible, human-in-the-loop discovery workflows. We introduce SelfAI, a self-directed, multi-agent-enabled discovery system that automates scientific exploration as a strategic, trajectory-driven decision-making process. SelfAI translates high-level research intent into executable experiments, reasons over accumulated experimental trajectories to guide subsequent exploration, and applies adaptive stopping decisions to terminate unproductive search paths within a closed-loop workflow governed by explicit efficiency-diversity trade-offs. Evaluated using real-world experiments spanning domains from machine learning to drug discovery, SelfAI consistently discovers high-quality solutions with substantially fewer redundant trials than classical optimization and recent LLM-based baselines. The proposed methods establish a general framework for organizing long-horizon scientific discovery and adaptive decision-making in complex scientific and engineering systems.

cs.LG↗

arXiv2026

A class of pseudorandom sequences From Function Fields

Motivated by the constructions of pseudorandom sequences over the cyclic elliptic function fields by Hu \textit{et al.} in \text{[IEEE Trans. Inf. Theory, 53(7), 2007]} and the constructions of low-correlation, large linear span binary sequences from function fields by Xing \textit{et al.} in \text{[IEEE Trans. Inf. Theory, 49(6), 2003]}, we utilize the bound derived by Weil \text{[Basic Number Theory, Grund. der Math. Wiss., Bd 144]} and Deligne \text{[ Lecture Notes in Mathematics, vol. 569 (Springer, Berlin, 1977)]} for the exponential sums over the general algebraic function fields and study the periods, linear complexities, linear complexity profiles, distributions of $r-$patterns, period correlation and nonlinear complexities for a class of $p-$ary sequences that generalize the constructions in \text{[IEEE Trans. Inf. Theory, 49(6), 2003]} and [IEEE Trans. Inf. Theory, 53(7), 2007].

cs.IT↗

arXiv2026

RuleSmith: Multi-Agent LLMs for Automated Game Balancing

Game balancing is a longstanding challenge requiring repeated playtesting, expert intuition, and extensive manual tuning. We introduce RuleSmith, the first framework that achieves automated game balancing by leveraging the reasoning capabilities of multi-agent LLMs. It couples a game engine, multi-agent LLMs self-play, and Bayesian optimization operating over a multi-dimensional rule space. As a proof of concept, we instantiate RuleSmith on CivMini, a simplified civilization-style game containing heterogeneous factions, economy systems, production rules, and combat mechanics, all governed by tunable parameters. LLM agents interpret textual rulebooks and game states to generate actions, to conduct fast evaluation of balance metrics such as win-rate disparities. To search the parameter landscape efficiently, we integrate Bayesian optimization with acquisition-based adaptive sampling and discrete projection: promising candidates receive more evaluation games for accurate assessment, while exploratory candidates receive fewer games for efficient exploration. Experiments show that RuleSmith converges to highly balanced configurations and provides interpretable rule adjustments that can be directly applied to downstream game systems. Our results illustrate that LLM simulation can serve as a powerful surrogate for automating design and balancing in complex multi-agent environments.

cs.LG↗

arXiv2026

GTFMN: Guided Texture and Feature Modulation Network for Low-Light Image Enhancement and Super-Resolution

Low-light image super-resolution (LLSR) is a challenging task due to the coupled degradation of low resolution and poor illumination. To address this, we propose the Guided Texture and Feature Modulation Network (GTFMN), a novel framework that decouples the LLSR task into two sub-problems: illumination estimation and texture restoration. First, our network employs a dedicated Illumination Stream whose purpose is to predict a spatially varying illumination map that accurately captures lighting distribution. Further, this map is utilized as an explicit guide within our novel Illumination Guided Modulation Block (IGM Block) to dynamically modulate features in the Texture Stream. This mechanism achieves spatially adaptive restoration, enabling the network to intensify enhancement in poorly lit regions while preserving details in well-exposed areas. Extensive experiments demonstrate that GTFMN achieves the best performance among competing methods on the OmniNormal5 and OmniNormal15 datasets, outperforming them in both quantitative metrics and visual quality.

cs.CV↗

arXiv2026

When and How Unlabeled Data Provably Improve In-Context Learning

Recent research shows that in-context learning (ICL) can be effective even when demonstrations have missing or incorrect labels. To shed light on this capability, we examine a canonical setting where the demonstrations are drawn according to a binary Gaussian mixture model (GMM) and a certain fraction of the demonstrations have missing labels. We provide a comprehensive theoretical study to show that: (1) The loss landscape of one-layer linear attention models recover the optimal fully-supervised estimator but completely fail to exploit unlabeled data; (2) In contrast, multilayer or looped transformers can effectively leverage unlabeled data by implicitly constructing estimators of the form $\sum_{i\ge 0} a_i (X^\top X)^iX^\top y$ with $X$ and $y$ denoting features and partially-observed labels (with missing entries set to zero). We characterize the class of polynomials that can be expressed as a function of depth and draw connections to Expectation Maximization, an iterative pseudo-labeling algorithm commonly used in semi-supervised learning. Importantly, the leading polynomial power is exponential in depth, so mild amount of depth/looping suffices. As an application of theory, we propose looping off-the-shelf tabular foundation models to enhance their semi-supervision capabilities. Extensive evaluations on real-world datasets show that our method significantly improves the semisupervised tabular learning performance over the standard single pass inference.

cs.LG↗

arXiv2026

U-Harmony: Enhancing Joint Training for Segmentation Models with Universal Harmonization

In clinical practice, medical segmentation datasets are often limited and heterogeneous, with variations in modalities, protocols, and anatomical targets across institutions. Existing deep learning models struggle to jointly learn from such diverse data, often sacrificing either generalization or domain-specific knowledge. To overcome these challenges, we propose a joint training method called Universal Harmonization (U-Harmony), which can be integrated into deep learning-based architectures with a domain-gated head, enabling a single segmentation model to learn from heterogeneous datasets simultaneously. By integrating U-Harmony, our approach sequentially normalizes and then denormalizes feature distributions to mitigate domain-specific variations while preserving original dataset-specific knowledge. More appealingly, our framework also supports universal modality adaptation, allowing the seamless learning of new imaging modalities and anatomical classes. Extensive experiments on cross-institutional brain lesion datasets demonstrate the effectiveness of our approach, establishing a new benchmark for robust and adaptable 3D medical image segmentation models in real-world clinical settings.

cs.CV↗

arXiv2026

Physics-Informed Deep Operator Learning for Computational Hydraulics Modeling

Traditional 2D hydraulic models face significant computational challenges that limit their applications that are time-sensitive or require many model evaluations. This study presents a physics-informed Deep Operator Network (DeepONet) framework for computational hydraulics modeling that learns the solution operator of the 2D shallow water equations (SWEs) to create fast surrogate models. The framework can operate in two modes: a purely data-driven SWE-DeepONet that learns from numerical solver such as SRH-2D, and a physics-informed PI-SWE-DeepONet that additionally incorporates the continuous SWEs as constraints during training. Based on a real-world case, steady flows in a reach of the Sacramento River in California, it is demonstrated that PI-SWE-DeepONet possesses much enhanced prediction capability than SWE-DeepONet when applied to out-of-distribution scenarios. The physics-informed model is shown to exhibit slower error growth and larger breakdown distances in comparison with SWE-DeepONet. The gain of the physics-informed training, however, comes with costs, chief among which are the simulated results have slightly higher errors for in-distribution cases. It reflects the existence of a tension between the two competing training objectives: fitting the results from the traditional hydraulic model and satisfying the continuous governing equations. In this study, guidelines are developed for selecting the appropriate approach based on a real-world case: PI-SWE-DeepONet is preferred for out-of-distribution predictions, uncertain training data, or when physical consistency is a priority, while SWE-DeepONet is recommended if the modeling objective is to replicate faithfully the traditional hydraulic model results within the training distribution. Other challenges are also discussed, such as the loss weighting approach.

physics.flu-dyn↗

arXiv2026

MODE: Efficient Time Series Prediction with Mamba Enhanced by Low-Rank Neural ODEs

Time series prediction plays a pivotal role across diverse domains such as finance, healthcare, energy systems, and environmental modeling. However, existing approaches often struggle to balance efficiency, scalability, and accuracy, particularly when handling long-range dependencies and irregularly sampled data. To address these challenges, we propose MODE, a unified framework that integrates Low-Rank Neural Ordinary Differential Equations (Neural ODEs) with an Enhanced Mamba architecture. As illustrated in our framework, the input sequence is first transformed by a Linear Tokenization Layer and then processed through multiple Mamba Encoder blocks, each equipped with an Enhanced Mamba Layer that employs Causal Convolution, SiLU activation, and a Low-Rank Neural ODE enhancement to efficiently capture temporal dynamics. This low-rank formulation reduces computational overhead while maintaining expressive power. Furthermore, a segmented selective scanning mechanism, inspired by pseudo-ODE dynamics, adaptively focuses on salient subsequences to improve scalability and long-range sequence modeling. Extensive experiments on benchmark datasets demonstrate that MODE surpasses existing baselines in both predictive accuracy and computational efficiency. Overall, our contributions include: (1) a unified and efficient architecture for long-term time series modeling, (2) integration of Mamba's selective scanning with low-rank Neural ODEs for enhanced temporal representation, and (3) substantial improvements in efficiency and scalability enabled by low-rank approximation and dynamic selective scanning.

cs.LG↗

arXiv2025

In-situ Value-aligned Human-Robot Interactions with Physical Constraints

Equipped with Large Language Models (LLMs), human-centered robots are now capable of performing a wide range of tasks that were previously deemed challenging or unattainable. However, merely completing tasks is insufficient for cognitive robots, who should learn and apply human preferences to future scenarios. In this work, we propose a framework that combines human preferences with physical constraints, requiring robots to complete tasks while considering both. Firstly, we developed a benchmark of everyday household activities, which are often evaluated based on specific preferences. We then introduced In-Context Learning from Human Feedback (ICLHF), where human feedback comes from direct instructions and adjustments made intentionally or unintentionally in daily life. Extensive sets of experiments, testing the ICLHF to generate task plans and balance physical constraints with preferences, have demonstrated the efficiency of our approach. Project page: https://iclhf.github.io .

cs.RO↗

arXiv2025

Saliency Guided Longitudinal Medical Visual Question Answering

Longitudinal medical visual question answering (Diff-VQA) requires comparing paired studies from different time points and answering questions about clinically meaningful changes. In this setting, the difference signal and the consistency of visual focus across time are more informative than absolute single-image findings. We propose a saliency-guided encoder-decoder for chest X-ray Diff-VQA that turns post-hoc saliency into actionable supervision. The model first performs a lightweight near-identity affine pre-alignment to reduce nuisance motion between visits. It then executes a within-epoch two-step loop: step 1 extracts a medically relevant keyword from the answer and generates keyword-conditioned Grad-CAM on both images to obtain disease-focused saliency; step 2 applies the shared saliency mask to both time points and generates the final answer. This closes the language-vision loop so that the terms that matter also guide where the model looks, enforcing spatially consistent attention on corresponding anatomy. On Medical-Diff-VQA, the approach attains competitive performance on BLEU, ROUGE-L, CIDEr, and METEOR while providing intrinsic interpretability. Notably, the backbone and decoder are general-domain pretrained without radiology-specific pretraining, highlighting practicality and transferability. These results support saliency-conditioned generation with mild pre-alignment as a principled framework for longitudinal reasoning in medical VQA.

cs.AI↗

arXiv2025

On hallucinations in AI-generated content for nuclear medicine imaging (the DREAM report)

Artificial intelligence-generated content (AIGC) has shown remarkable performance in nuclear medicine imaging (NMI), offering cost-effective software solutions for tasks such as image enhancement, motion correction, and attenuation correction. However, these advancements come with the risk of hallucinations, generating realistic yet factually incorrect content. Hallucinations can misrepresent anatomical and functional information, compromising diagnostic accuracy and clinical trust. This paper presents a comprehensive perspective of hallucination-related challenges in AIGC for NMI, introducing the DREAM report, which covers recommendations for definition, representative examples, detection and evaluation metrics, underlying causes, and mitigation strategies. This position statement paper aims to initiate a common understanding for discussions and future research toward enhancing AIGC applications in NMI, thereby supporting their safe and effective deployment in clinical practice.

eess.IV↗

arXiv2025

Identifying Trustworthiness Challenges in Deep Learning Models for Continental-Scale Water Quality Prediction

Water quality is foundational to environmental sustainability, ecosystem resilience, and public health. Deep learning offers transformative potential for large-scale water quality prediction and scientific insights generation. However, their widespread adoption in high-stakes operational decision-making, such as pollution mitigation and equitable resource allocation, is prevented by unresolved trustworthiness challenges, including performance disparity, robustness, uncertainty, interpretability, generalizability, and reproducibility. In this work, we present a multi-dimensional, quantitative evaluation of trustworthiness benchmarking three state-of-the-art deep learning architectures: recurrent (LSTM), operator-learning (DeepONet), and transformer-based (Informer), trained on 37 years of data from 482 U.S. basins to predict 20 water quality variables. Our investigation reveals systematic performance disparities tied to process complexity, data availability, and basin heterogeneity. Management-critical variables remain the least predictable and most uncertain. Robustness tests reveal pronounced sensitivity to outliers and corrupted targets; notably, the architecture with the strongest baseline performance (LSTM) proves most vulnerable under data corruption. Attribution analyses align for simple variables but diverge for nutrients, underscoring the need for multi-method interpretability. Spatial generalization to ungauged basins remains poor across all models. This work serves as a timely call to action for advancing trustworthy data-driven methods for water resources management and provides a pathway to offering critical insights for researchers, decision-makers, and practitioners seeking to leverage artificial intelligence (AI) responsibly in environmental management.

cs.LG↗

arXiv2025

A Systematic Review on Foundation Models for Electrocardiogram Analysis: Initial Strides and Expansive Horizons

Electrocardiogram (ECG) is widely used in healthcare applications, such as arrhythmia detection and sleep monitoring, making accurate ECG analysis critically essential. Traditional deep learning models for ECG are task-specific, with limited generalization and narrow functionality. Foundation models (FMs), or large pre-training models, have recently advanced representation learning, enabling strong performance across diverse tasks and motivating their adoption for ECG analysis. Here, we present the first comprehensive review dedicated to ECG foundation models (ECG-FMs). We map the current landscape of architectures, pre-training paradigms, and adaptation strategies, and critically examine their strengths, limitations, and clinical potential. By consolidating this emerging field, we aim to accelerate the development of robust, generalizable ECG-FMs and chart future directions for their integration into healthcare practice.

eess.SP↗

arXiv2025

Evolution of ultra-flat band in van der Waals kagome semiconductor Pd3P2(S1-xSex)8

We investigate the evolutions of structural parameters, optical properties, and electronic structures of van der Waals kagome semiconductor Pd3P2S8 with Se doping. When the doping level of Se increases, the bandgaps of Pd3P2(S1-xSex)8 single crystals decrease gradually, accompanying with the expanded unit cells. The first-principles calculations show that there is a flat band (FB) near the Fermi level in bulk Pd3P2S8. This FB mainly originates from the dz2-like orbitals of Pd atoms in the Pd kagome lattice, which has a finite interlayer electron hopping perpendicular to the PdS4 square plane. The interlayer hopping can be reinforced with the Se doping, inducing a stronger interlayer coupling via the chalcogen atoms at apical sites, which reduces the bandgap and enhances the cleavage energy. In contrast, the vanishing interlayer hopping in the two-dimensional limit results in the formation of ultra-FB in the monolayers of these compounds. The easy exfoliation and the existence of unique ultra-FB near EF make Pd3P2(S1-xSex)8 a model system to explore the exotic physics of FB in two-dimensional kagome lattice.

cond-mat.mtrl-sci↗

arXiv2025

Infrared Image Super-Resolution: Systematic Review, and Future Trends

Image Super-Resolution (SR) is essential for a wide range of computer vision and image processing tasks. Investigating infrared (IR) image (or thermal images) super-resolution is a continuing concern within the development of deep learning. This survey aims to provide a comprehensive perspective of IR image super-resolution, including its applications, hardware imaging system dilemmas, and taxonomy of image processing methodologies. In addition, the datasets and evaluation metrics in IR image super-resolution tasks are also discussed. Furthermore, the deficiencies in current technologies and possible promising directions for the community to explore are highlighted. To cope with the rapid development in this field, we intend to regularly update the relevant excellent work at https://github.com/yongsongH/Infrared_Image_SR_Survey.

eess.IV↗