arXiv subjects

Xiaowei Jia

Publications and source records attributed to Xiaowei Jia.

At least 37 records · Page 2Linked to original sources

arXiv2026

CHAM-net: A Contrastive Hierarchical Adaptive Meta-network for Robust Global Methane Flux Prediction

Methane is a potent greenhouse gas that significantly contributes to global warming. However, accurately estimating global methane emissions and consumption remains challenging due to the complex interactions among environmental drivers that may vary across spatial and temporal scales. Prior data-driven methods often overlook the inherent spatiotemporal heterogeneity of ecosystems, failing to explicitly capture site-specific characteristics and cross-year evolutionary dynamics. To address these issues, we propose the Contrastive Hierarchical Adaptive Meta-network (CHAM-net), a novel framework that explicitly learns from historical context to capture site-specific dynamics. CHAM-net employs a hierarchical encoder-decoder architecture, in which the encoder captures site-specific characteristics from historical data and then dynamically conditions the decoder to generate the final prediction. Experimental results demonstrate that CHAM-net consistently outperforms all baseline methods on both simulation and observational datasets for methane emission and consumption, achieving nRMSE values as low as 0.43 and 0.88 with corresponding R2 scores up to 0.97 and 0.68 for emission prediction.

cs.LG↗

arXiv2026

From Pixels to Places: A Systematic Benchmark for Evaluating Image Geolocalization Ability in Large Language Models

Image geolocalization, the task of identifying the geographic location depicted in an image, is important for applications in crisis response, digital forensics, and location-based intelligence. While recent advances in large language models (LLMs) offer new opportunities for visual reasoning, their ability to perform image geolocalization remains underexplored. In this study, we introduce a benchmark called IMAGEO-Bench that systematically evaluates accuracy, distance error, geospatial bias, and reasoning process. Our benchmark includes three diverse datasets covering global street scenes, points of interest (POIs) in the United States, and a private collection of unseen images. Through experiments on 10 state-of-the-art LLMs, including both open- and closed-source models, we reveal clear performance disparities, with closed-source models generally showing stronger reasoning. Importantly, we uncover geospatial biases as LLMs tend to perform better in high-resource regions (e.g., North America, Western Europe, and California) while exhibiting degraded performance in underrepresented areas. Regression diagnostics demonstrate that successful geolocalization is primarily dependent on recognizing urban settings, outdoor environments, street-level imagery, and identifiable landmarks. Overall, IMAGEO-Bench provides a rigorous lens into the spatial reasoning capabilities of LLMs and offers implications for building geolocation-aware AI systems.

cs.CV↗

arXiv2026

FlowRefiner: Flow Matching-Based Iterative Refinement for 3D Turbulent Flow Simulation

Accurate autoregressive prediction of 3D turbulent flows remains challenging for neural PDE solvers, as small errors in fine-scale structures can accumulate rapidly over rollout. In this paper, we propose FlowRefiner, a flow matching-based iterative refinement framework for 3D turbulent flow simulation. The method replaces stochastic denoising refinement with deterministic ODE-based correction, uses a unified velocity-field regression objective across all refinement stages, and introduces a decoupled sigma schedule that fixes the noise range independently of refinement depth. These design choices yield stable and effective refinement in the small-noise regime. Experiments on large-scale 3D turbulence with rich multi-scale structures show that FlowRefiner achieves state-of-the-art autoregressive prediction accuracy and strong physical consistency. Although developed for turbulent flow simulation, the proposed framework is broadly applicable to iterative refinement problems in scientific modeling.

physics.flu-dyn↗

arXiv2026

X-MethaneWet: A Cross-scale Global Wetland Methane Emission Benchmark Dataset for Advancing Science Discovery with AI

Methane (CH$_4$) is the second most powerful greenhouse gas after carbon dioxide and plays a crucial role in climate change due to its high global warming potential. Accurately modeling CH$_4$ fluxes across the globe and at fine temporal scales is essential for understanding its spatial and temporal variability and developing effective mitigation strategies. In this work, we introduce the first-of-its-kind cross-scale global wetland methane benchmark dataset (X-MethaneWet), which synthesizes physics-based model simulation data from TEM-MDM and the real-world observation data from FLUXNET-CH$_4$. This dataset can offer opportunities for improving global wetland CH$_4$ modeling and science discovery with new AI algorithms. To set up AI model baselines for methane flux prediction, we evaluate the performance of various sequential deep learning models on X-MethaneWet. Furthermore, we explore four different transfer learning techniques to leverage simulated data from TEM-MDM to improve the generalization of deep learning models on real-world FLUXNET-CH$_4$ observations. Our extensive experiments demonstrate the effectiveness of these approaches, highlighting their potential for advancing methane emission modeling and identifying new opportunities for developing more accurate and scalable AI-driven climate models.

cs.LG↗

arXiv2026

Retrieval-Augmented Multi-scale Framework for County-Level Crop Yield Prediction Across Large Regions

This paper proposes a new method for crop yield prediction, which is essential for developing management strategies, informing insurance assessments, and ensuring long-term food security. Although existing data-driven approaches have shown promise in this domain, their performance often degrades when applied across large geographic regions and long time periods. This limitation arises from two key challenges: (1) difficulty in jointly capturing short-term and long-term temporal patterns, and (2) inability to effectively accommodate spatial data variability in agricultural systems. Ignoring these issues often leads to unreliable predictions for specific regions or years, which ultimately affects policy decisions and resource allocation. In this paper, we propose a new predictive framework to address these challenges. First, we introduce a new backbone model architecture that captures both short-term daily-scale crop growth dynamics and long-term dependencies across years. To further improve generalization across diverse spatial regions, we augment this model with a retrieval-based adaptation strategy. Recognizing the substantial yield variation across years, we design a novel retrieval-and-refinement pipeline that adjusts retrieved samples by removing cross-year bias not explained by input features. Our experiments on real-world county-level corn yield data over 630 counties in the US demonstrate that our method consistently outperforms different types of baselines. The results also verify the effectiveness of the retrieval-based augmentation method in improving model robustness under spatial heterogeneity.

cs.LG↗

arXiv2026

Role-Aware Conditional Inference for Spatiotemporal Ecosystem Carbon Flux Prediction

Accurate prediction of terrestrial ecosystem carbon fluxes (e.g., CO$_2$, GPP, and CH$_4$) is essential for understanding the global carbon cycle and managing its impacts. However, prediction remains challenging due to strong spatiotemporal heterogeneity: ecosystem flux responses are constrained by slowly varying regime conditions, while short-term fluctuations are driven by high-frequency dynamic forcings. Most existing learning-based approaches treat environmental covariates as a homogeneous input space, implicitly assuming a global response function, which leads to brittle generalization across heterogeneous ecosystems. In this work, we propose Role-Aware Conditional Inference (RACI), a process-informed learning framework that formulates ecosystem flux prediction as a conditional inference problem. RACI employs hierarchical temporal encoding to disentangle slow regime conditioners from fast dynamic drivers, and incorporates role-aware spatial retrieval that supplies functionally similar and geographically local context for each role. By explicitly modeling these distinct functional roles, RACI enables a model to adapt its predictions across diverse environmental regimes without training separate local models or relying on fixed spatial structures. We evaluate RACI across multiple ecosystem types (wetlands and agricultural systems), carbon fluxes (CO$_2$, GPP, CH$_4$), and data sources, including both process-based simulations and observational measurements. Across all settings, RACI consistently outperforms competitive spatiotemporal baselines, demonstrating improved accuracy and spatial generalization under pronounced environmental heterogeneity.

cs.LG↗

arXiv2026

Learning PDE Solvers with Physics and Data: A Unifying View of Physics-Informed Neural Networks and Neural Operators

Partial differential equations (PDEs) are central to scientific modeling. Modern workflows increasingly rely on learning-based components to support model reuse, inference, and integration across large computational processes. Despite the emergence of various physics-aware data-driven approaches, the field still lacks a unified perspective to uncover their relationships, limitations, and appropriate roles in scientific workflows. To this end, we propose a unifying perspective to place two dominant paradigms: Physics-Informed Neural Networks (PINNs) and Neural Operators (NOs), within a shared design space. We organize existing methods from three fundamental dimensions: what is learned, how physical structures are integrated into the learning process, and how the computational load is amortized across problem instances. In this way, many challenges can be best understood as consequences of these structural properties of learning PDEs. By analyzing advances through this unifying view, our survey aims to facilitate the development of reliable learning-based PDE solvers and catalyze a synthesis of physics and data.

cs.LG↗

arXiv2026

PEST: Physics-Enhanced Swin Transformer for 3D Turbulence Simulation

Accurate simulation of turbulent flows is fundamental to scientific and engineering applications. Direct numerical simulation (DNS) offers the highest fidelity but is computationally prohibitive, while existing data-driven alternatives struggle with stable long-horizon rollouts, physical consistency, and faithful simulation of small-scale structures. These challenges are particularly acute in three-dimensional (3D) settings, where the cubic growth of spatial degrees of freedom dramatically amplifies computational cost, memory demand, and the difficulty of capturing multi-scale interactions. To address these challenges, we propose a Physics-Enhanced Swin Transformer (PEST) for 3D turbulence simulation. PEST leverages a window-based self-attention mechanism to effectively model localized PDE interactions while maintaining computational efficiency. We introduce a frequency-domain adaptive loss that explicitly emphasizes small-scale structures, enabling more faithful simulation of high-frequency dynamics. To improve physical consistency, we incorporate Navier--Stokes residual constraints and divergence-free regularization directly into the learning objective. Extensive experiments on two representative turbulent flow configurations demonstrate that PEST achieves accurate, physically consistent, and stable autoregressive long-term simulations, outperforming existing data-driven baselines.

physics.flu-dyn↗

arXiv2026

AgroFlux: A Spatial-Temporal Benchmark for Carbon and Nitrogen Flux Prediction in Agricultural Ecosystems

Agroecosystem, which heavily influenced by human actions and accounts for a quarter of global greenhouse gas emissions (GHGs), plays a crucial role in mitigating global climate change and securing environmental sustainability. However, we can't manage what we can't measure. Accurately quantifying the pools and fluxes in the carbon, nutrient, and water nexus of the agroecosystem is therefore essential for understanding the underlying drivers of GHG and developing effective mitigation strategies. Conventional approaches like soil sampling, process-based models, and black-box machine learning models are facing challenges such as data sparsity, high spatiotemporal heterogeneity, and complex subsurface biogeochemical and physical processes. Developing new trustworthy approaches such as AI-empowered models, will require the AI-ready benchmark dataset and outlined protocols, which unfortunately do not exist. In this work, we introduce a first-of-its-kind spatial-temporal agroecosystem GHG benchmark dataset that integrates physics-based model simulations from Ecosys and DayCent with real-world observations from eddy covariance flux towers and controlled-environment facilities. We evaluate the performance of various sequential deep learning models on carbon and nitrogen flux prediction, including LSTM-based models, temporal CNN-based model, and Transformer-based models. Furthermore, we explored transfer learning to leverage simulated data to improve the generalization of deep learning models on real-world observations. Our benchmark dataset and evaluation framework contribute to the development of more accurate and scalable AI-driven agroecosystem models, advancing our understanding of ecosystem-climate interactions.

cs.LG↗

arXiv2025

Accelerating MHC-II Epitope Discovery via Multi-Scale Prediction in Antigen Presentation

Antigenic epitope presented by major histocompatibility complex II (MHC-II) proteins plays an essential role in immunotherapy. However, compared to the more widely studied MHC-I in computational immunotherapy, the study of MHC-II antigenic epitope poses significantly more challenges due to its complex binding specificity and ambiguous motif patterns. Consequently, existing datasets for MHC-II interactions are smaller and less standardized than those available for MHC-I. To address these challenges, we present a well-curated dataset derived from the Immune Epitope Database (IEDB) and other public sources. It not only extends and standardizes existing peptide-MHC-II datasets, but also introduces a novel antigen-MHC-II dataset with richer biological context. Leveraging this dataset, we formulate three major machine learning (ML) tasks of peptide binding, peptide presentation, and antigen presentation, which progressively capture the broader biological processes within the MHC-II antigen presentation pathway. We further employ a multi-scale evaluation framework to benchmark existing models, along with a comprehensive analysis over various modeling designs to this problem with a modular framework. Overall, this work serves as a valuable resource for advancing computational immunotherapy, providing a foundation for future research in ML guided epitope discovery and predictive modeling of immune responses.

cs.LG↗

arXiv2025

BrainPuzzle: Hybrid Physics and Data-Driven Reconstruction for Transcranial Ultrasound Tomography

Ultrasound brain imaging remains challenging due to the large difference in sound speed between the skull and brain tissues and the difficulty of coupling large probes to the skull. This work aims to achieve quantitative transcranial ultrasound by reconstructing an accurate speed-of-sound (SoS) map of the brain. Traditional physics-based full-waveform inversion (FWI) is limited by weak signals caused by skull-induced attenuation, mode conversion, and phase aberration, as well as incomplete spatial coverage since full-aperture arrays are clinically impractical. In contrast, purely data-driven methods that learn directly from raw ultrasound data often fail to model the complex nonlinear and nonlocal wave propagation through bone, leading to anatomically plausible but quantitatively biased SoS maps under low signal-to-noise and sparse-aperture conditions. To address these issues, we propose BrainPuzzle, a hybrid two-stage framework that combines physical modeling with machine learning. In the first stage, reverse time migration (time-reversal acoustics) is applied to multi-angle acquisitions to produce migration fragments that preserve structural details even under low SNR. In the second stage, a transformer-based super-resolution encoder-decoder with a graph-based attention unit (GAU) fuses these fragments into a coherent and quantitatively accurate SoS image. A partial-array acquisition strategy using a movable low-count transducer set improves feasibility and coupling, while the hybrid algorithm compensates for the missing aperture. Experiments on two synthetic datasets show that BrainPuzzle achieves superior SoS reconstruction accuracy and image completeness, demonstrating its potential for advancing quantitative ultrasound brain imaging.

cs.CV↗

arXiv2025

GREAT: Generalizable Representation Enhancement via Auxiliary Transformations for Zero-Shot Environmental Prediction

Environmental modeling faces critical challenges in predicting ecosystem dynamics across unmonitored regions due to limited and geographically imbalanced observation data. This challenge is compounded by spatial heterogeneity, causing models to learn spurious patterns that fit only local data. Unlike conventional domain generalization, environmental modeling must preserve invariant physical relationships and temporal coherence during augmentation. In this paper, we introduce Generalizable Representation Enhancement via Auxiliary Transformations (GREAT), a framework that effectively augments available datasets to improve predictions in completely unseen regions. GREAT guides the augmentation process to ensure that the original governing processes can be recovered from the augmented data, and the inclusion of the augmented data leads to improved model generalization. Specifically, GREAT learns transformation functions at multiple layers of neural networks to augment both raw environmental features and temporal influence. They are refined through a novel bi-level training process that constrains augmented data to preserve key patterns of the original source data. We demonstrate GREAT's effectiveness on stream temperature prediction across six ecologically diverse watersheds in the eastern U.S., each containing multiple stream segments. Experimental results show that GREAT significantly outperforms existing methods in zero-shot scenarios. This work provides a practical solution for environmental applications where comprehensive monitoring is infeasible.

cs.LG↗

arXiv2025

Physics Guided Machine Learning Methods for Hydrology

Streamflow prediction is one of the key challenges in the field of hydrology due to the complex interplay between multiple non-linear physical mechanisms behind streamflow generation. While physics based models are rooted in rich understanding of the physical processes, a significant performance gap still remains which can be potentially addressed by leveraging the recent advances in machine learning. The goal of this work is to incorporate our understanding of hydrological processes and constraints into machine learning algorithms to improve the predictive performance. Traditional ML models for this problem predict streamflow using weather drivers as input. However there are multiple intermediate processes that interact to generate streamflow from weather drivers. The key idea of the approach is to explicitly model these intermediate processes that connect weather drivers to streamflow using a multi-task learning framework. While our proposed approach requires data about intermediate processes during training, only weather drivers will be needed to predict the streamflow during testing phase. We assess the efficacy of the approach on a simulation dataset generated by the SWAT model for a catchment located in the South Branch of the Root River Watershed in southeast Minnesota. While the focus of this paper is on improving the performance given data from a single catchment, methodology presented here is applicable to ML-based approaches that use data from multiple catchments to improve performance of each individual catchment.

physics.ao-ph↗

arXiv2025

Towards efficient quantum algorithms for diffusion probabilistic models

A diffusion probabilistic model (DPM) is a generative model renowned for its ability to produce high-quality outputs in tasks such as image and audio generation. However, training DPMs on large, high-dimensional datasets such as high-resolution images or audio incurs significant computational, energy, and hardware costs. In this work, we introduce efficient quantum algorithms for implementing DPMs through various quantum ODE solvers. These algorithms highlight the potential of quantum Carleman linearization for diverse mathematical structures, leveraging state-of-the-art quantum linear system solvers (QLSS) or linear combination of Hamiltonian simulations (LCHS). Specifically, we focus on two approaches: DPM-solver-$k$ which employs exact $k$-th order derivatives to compute a polynomial approximation of $ε_θ(x_λ,λ)$; and UniPC which uses finite difference of $ε_θ(x_λ,λ)$ at different points $(x_{s_m}, λ_{s_m})$ to approximate higher-order derivatives. As such, this work represents one of the most direct and pragmatic applications of quantum algorithms to large-scale machine learning models, presumably taking substantial steps towards demonstrating the practical utility of quantum computing.

quant-ph↗

arXiv2025

FREE: The Foundational Semantic Recognition for Modeling Environmental Ecosystems

Modeling environmental ecosystems is critical for the sustainability of our planet, but is extremely challenging due to the complex underlying processes driven by interactions amongst a large number of physical variables. As many variables are difficult to measure at large scales, existing works often utilize a combination of observable features and locally available measurements or modeled values as input to build models for a specific study region and time period. This raises a fundamental question in advancing the modeling of environmental ecosystems: how to build a general framework for modeling the complex relationships among diverse environmental variables over space and time? In this paper, we introduce a framework, FREE, that enables the use of varying features and available information to train a universal model. The core idea is to map available environmental data into a text space and then convert the traditional predictive modeling task in environmental science to a semantic recognition problem. Our evaluation on two societally important real-world applications, stream water temperature prediction and crop yield prediction, demonstrates the superiority of FREE over multiple baselines, even in data-sparse scenarios.

cs.LG↗

arXiv2025

Geo-Aware Models for Stream Temperature Prediction across Different Spatial Regions and Scales

Understanding environmental ecosystems is vital for the sustainable management of our planet. However,existing physics-based and data-driven models often fail to generalize to varying spatial regions and scales due to the inherent data heterogeneity presented in real environmental ecosystems. This generalization issue is further exacerbated by the limited observation samples available for model training. To address these issues, we propose Geo-STARS, a geo-aware spatio-temporal modeling framework for predicting stream water temperature across different watersheds and spatial scales. The major innovation of Geo-STARS is the introduction of geo-aware embedding, which leverages geographic information to explicitly capture shared principles and patterns across spatial regions and scales. We further integrate the geo-aware embedding into a gated spatio-temporal graph neural network. This design enables the model to learn complex spatial and temporal patterns guided by geographic and hydrological context, even with sparse or no observational data. We evaluate Geo-STARS's efficacy in predicting stream water temperature, which is a master factor for water quality. Using real-world datasets spanning 37 years across multiple watersheds along the eastern coast of the United States, Geo-STARS demonstrates its superior generalization performance across both regions and scales, outperforming state-of-the-art baselines. These results highlight the promise of Geo-STARS for scalable, data-efficient environmental monitoring and decision-making.

cs.LG↗

arXiv2025

Truth Without Comprehension: A BlueSky Agenda for Steering the Fourth Mathematical Crisis

Machine-generated proofs are poised to reach large-scale, human-unreadable artifacts. They foreshadow what we call the Fourth Mathematical Crisis. This crisis crystallizes around three fundamental tensions: trusting proofs that no human can inspect, understanding results that no one can fully read, and verifying systems that themselves resist verification. As a minimal yet principled response, we propose the Human Understandability (HU) meta-axiom, which requires that every proof admits at least one projection that is resource-bounded, divergence-measured, and acceptable to a verifier. Confronting these questions opens a timely research agenda and points toward new directions in scalable reasoning, interpretable inference, and epistemic trust for the era of machine-scale mathematics.

cs.ET↗

arXiv2025

Learning to Retrieve for Environmental Knowledge Discovery: An Augmentation-Adaptive Self-Supervised Learning Framework

The discovery of environmental knowledge depends on labeled task-specific data, but is often constrained by the high cost of data collection. Existing machine learning approaches usually struggle to generalize in data-sparse or atypical conditions. To this end, we propose an Augmentation-Adaptive Self-Supervised Learning (A$^2$SL) framework, which retrieves relevant observational samples to enhance modeling of the target ecosystem. Specifically, we introduce a multi-level pairwise learning loss to train a scenario encoder that captures varying degrees of similarity among scenarios. These learned similarities drive a retrieval mechanism that supplements a target scenario with relevant data from different locations or time periods. Furthermore, to better handle variable scenarios, particularly under atypical or extreme conditions where traditional models struggle, we design an augmentation-adaptive mechanism that selectively enhances these scenarios through targeted data augmentation. Using freshwater ecosystems as a case study, we evaluate A$^2$SL in modeling water temperature and dissolved oxygen dynamics in real-world lakes. Experimental results show that A$^2$SL significantly improves predictive accuracy and enhances robustness in data-scarce and atypical scenarios. Although this study focuses on freshwater ecosystems, the A$^2$SL framework offers a broadly applicable solution in various scientific domains.

cs.LG↗