arXiv subjects

Xinwei Deng

Publications and source records attributed to Xinwei Deng.

At least 37 records · Page 2Linked to original sources

arXiv2023

Deep Neural Network Identification of Limnonectes Species and New Class Detection Using Image Data

As is true of many complex tasks, the work of discovering, describing, and understanding the diversity of life on Earth (viz., biological systematics and taxonomy) requires many tools. Some of this work can be accomplished as it has been done in the past, but some aspects present us with challenges which traditional knowledge and tools cannot adequately resolve. One such challenge is presented by species complexes in which the morphological similarities among the group members make it difficult to reliably identify known species and detect new ones. We address this challenge by developing new tools using the principles of machine learning to resolve two specific questions related to species complexes. The first question is formulated as a classification problem in statistics and machine learning and the second question is an out-of-distribution (OOD) detection problem. We apply these tools to a species complex comprising Southeast Asian stream frogs (Limnonectes kuhlii complex) and employ a morphological character (hind limb skin texture) traditionally treated qualitatively in a quantitative and objective manner. We demonstrate that deep neural networks can successfully automate the classification of an image into a known species group for which it has been trained. We further demonstrate that the algorithm can successfully classify an image into a new class if the image does not belong to the existing classes. Additionally, we use the larger MNIST dataset to test the performance of our OOD detection algorithm. We finish our paper with some concluding remarks regarding the application of these methods to species complexes and our efforts to document true biodiversity. This paper has online supplementary materials.

stat.ML↗

arXiv2023

On Block Cholesky Decomposition for Sparse Inverse Covariance Estimation

The modified Cholesky decomposition is popular for inverse covariance estimation, but often needs pre-specification on the full information of variable ordering. In this work, we propose a block Cholesky decomposition (BCD) for estimating inverse covariance matrix under the partial information of variable ordering, in the sense that the variables can be divided into several groups with available ordering among groups, but variables within each group have no orderings. The proposed BCD model provides a unified framework for several existing methods including the modified Cholesky decomposition and the Graphical lasso. By utilizing the partial information on variable ordering, the proposed BCD model guarantees the positive definiteness of the estimated matrix with statistically meaningful interpretation. Theoretical results are established under regularity conditions. Simulation and case studies are conducted to evaluate the proposed BCD model.

stat.ME↗

arXiv2023

Bayesian D-Optimal Design of Experiments with Quantitative and Qualitative Responses

Systems with both quantitative and qualitative responses are widely encountered in many applications. Design of experiment methods are needed when experiments are conducted to study such systems. Classic experimental design methods are unsuitable here because they often focus on one type of response. In this paper, we develop a Bayesian D-optimal design method for experiments with one continuous and one binary response. Both noninformative and conjugate informative prior distributions on the unknown parameters are considered. The proposed design criterion has meaningful interpretations regarding the D-optimality for the models for both types of responses. An efficient point-exchange search algorithm is developed to construct the local D-optimal designs for given parameter values. Global D-optimal designs are obtained by accumulating the frequencies of the design points in local D-optimal designs, where the parameters are sampled from the prior distributions. The performances of the proposed methods are evaluated through two examples.

stat.ME↗

arXiv2023

Clustering-based Imputation for Dropout Buyers in Large-scale Online Experimentation

In online experimentation, appropriate metrics (e.g., purchase) provide strong evidence to support hypotheses and enhance the decision-making process. However, incomplete metrics are frequently occurred in the online experimentation, making the available data to be much fewer than the planned online experiments (e.g., A/B testing). In this work, we introduce the concept of dropout buyers and categorize users with incomplete metric values into two groups: visitors and dropout buyers. For the analysis of incomplete metrics, we propose a clustering-based imputation method using $k$-nearest neighbors. Our proposed imputation method considers both the experiment-specific features and users' activities along their shopping paths, allowing different imputation values for different users. To facilitate efficient imputation of large-scale data sets in online experimentation, the proposed method uses a combination of stratification and clustering. The performance of the proposed method is compared to several conventional methods in both simulation studies and a real online experiment at eBay.

cs.LG↗

arXiv2022

Tight Mutual Information Estimation With Contrastive Fenchel-Legendre Optimization

Successful applications of InfoNCE and its variants have popularized the use of contrastive variational mutual information (MI) estimators in machine learning. While featuring superior stability, these estimators crucially depend on costly large-batch training, and they sacrifice bound tightness for variance reduction. To overcome these limitations, we revisit the mathematics of popular variational MI bounds from the lens of unnormalized statistical modeling and convex optimization. Our investigation not only yields a new unified theoretical framework encompassing popular variational MI bounds but also leads to a novel, simple, and powerful contrastive MI estimator named as FLO. Theoretically, we show that the FLO estimator is tight, and it provably converges under stochastic gradient descent. Empirically, our FLO estimator overcomes the limitations of its predecessors and learns more efficiently. The utility of FLO is verified using an extensive set of benchmarks, which also reveals the trade-offs in practical MI estimation.

stat.ML↗

arXiv2022

Bayesian Sparse Regression for Mixed Multi-Responses with Application to Runtime Metrics Prediction in Fog Manufacturing

Fog manufacturing can greatly enhance traditional manufacturing systems through distributed Fog computation units, which are governed by predictive computational workload offloading methods under different Industrial Internet architectures. It is known that the predictive offloading methods highly depend on accurate prediction and uncertainty quantification of runtime performance metrics, containing multivariate mixed-type responses (i.e., continuous, counting, binary). In this work, we propose a Bayesian sparse regression for multivariate mixed responses to enhance the prediction of runtime performance metrics and to enable the statistical inferences. The proposed method considers both group and individual variable selection to jointly model the mixed types of runtime performance metrics. The conditional dependency among multiple responses is described by a graphical model using the precision matrix, where a spike-and-slab prior is used to enable the sparse estimation of the graph. The proposed method not only achieves accurate prediction, but also makes the predictive model more interpretable with statistical inferences on model parameters and prediction in the Fog manufacturing. A simulation study and a real case example in a Fog manufacturing are conducted to demonstrate the merits of the proposed model.

stat.ME↗

arXiv2022

Neighborhood VAR: Efficient estimation of multivariate timeseries with neighborhood information

In data science, vector autoregression (VAR) models are popular in modeling multivariate time series in the environmental sciences and other applications. However, these models are computationally complex with the number of parameters scaling quadratically with the number of time series. In this work, we propose a so-called neighborhood vector autoregression (NVAR) model to efficiently analyze large-dimensional multivariate time series. We assume that the time series have underlying neighborhood relationships, e.g., spatial or network, among them based on the inherent setting of the problem. When this neighborhood information is available or can be summarized using a distance matrix, we demonstrate that our proposed NVAR method provides a computationally efficient and theoretically sound estimation of model parameters. The performance of the proposed method is compared with other existing approaches in both simulation studies and a real application of stream nitrogen study.

stat.ME↗

arXiv2022

Modeling and Active Learning for Experiments with Quantitative-Sequence Factors

A new type of experiment that aims to determine the optimal quantities of a sequence of factors is eliciting considerable attention in medical science, bioengineering, and many other disciplines. Such studies require the simultaneous optimization of both quantities and the sequence orders of several components which are called quantitative-sequence (QS) factors. Given the large and semi-discrete solution spaces in such experiments, efficiently identifying optimal or near-optimal solutions by using a small number of experimental trials is a nontrivial task. To address this challenge, we propose a novel active learning approach, called QS-learning, to enable effective modeling and efficient optimization for experiments with QS factors. QS-learning consists of three parts: a novel mapping-based additive Gaussian process (MaGP) model, an efficient global optimization scheme (QS-EGO), and a new class of optimal designs (QS-design). The theoretical properties of the proposed method are investigated, and optimization techniques using analytical gradients are developed. The performance of the proposed method is demonstrated via a real drug experiment on lymphoma treatment and several simulation studies.

stat.ME↗

arXiv2022

A UCB-based Tree Search Approach to Joint Verification-Correction Strategy for Large Scale Systems

Verification planning is a sequential decision-making problem that specifies a set of verification activities (VA) and correction activities (CA) at different phases of system development. While VAs are used to identify errors and defects, CAs also play important roles in system verification as they correct the identified errors and defects. However, current planning methods only consider VAs as decision choices. Because VAs and CAs have different activity spaces, planning a joint verification-correction strategy (JVCS) is still challenging, especially for large-size systems. Here we introduce a UCB-based tree search approach to search for near-optimal JVCSs. First, verification planning is simplified as repeatable bandit problems and an upper confidence bound rule for repeatable bandits (UCBRB) is presented with the optimal regret bound. Next, a tree search algorithm is proposed to search for feasible JVCSs. A tree-based ensemble learning model is also used to extend the tree search algorithm to handle local optimality issues. The proposed approach is evaluated on the notional case of a communication system.

cs.SE↗

arXiv2022

EzGP: Easy-to-Interpret Gaussian Process Models for Computer Experiments with Both Quantitative and Qualitative Factors

Computer experiments with both quantitative and qualitative (QQ) inputs are commonly used in science and engineering applications. Constructing desirable emulators for such computer experiments remains a challenging problem. In this article, we propose an easy-to-interpret Gaussian process (EzGP) model for computer experiments to reflect the change of the computer model under the different level combinations of qualitative factors. The proposed modeling strategy, based on an additive Gaussian process, is flexible to address the heterogeneity of computer models involving multiple qualitative factors. We also develop two useful variants of the EzGP model to achieve computational efficiency for data with high dimensionality and large sizes. The merits of these models are illustrated by several numerical examples and a real data application.

stat.ME↗

arXiv2021

Statistical Perspectives on Reliability of Artificial Intelligence Systems

Artificial intelligence (AI) systems have become increasingly popular in many areas. Nevertheless, AI technologies are still in their developing stages, and many issues need to be addressed. Among those, the reliability of AI systems needs to be demonstrated so that the AI systems can be used with confidence by the general public. In this paper, we provide statistical perspectives on the reliability of AI systems. Different from other considerations, the reliability of AI systems focuses on the time dimension. That is, the system can perform its designed functionality for the intended period. We introduce a so-called SMART statistical framework for AI reliability research, which includes five components: Structure of the system, Metrics of reliability, Analysis of failure causes, Reliability assessment, and Test planning. We review traditional methods in reliability data analysis and software reliability, and discuss how those existing methods can be transformed for reliability modeling and assessment of AI systems. We also describe recent developments in modeling and analysis of AI reliability and outline statistical research challenges in this area, including out-of-distribution detection, the effect of the training set, adversarial attacks, model accuracy, and uncertainty quantification, and discuss how those topics can be related to AI reliability, with illustrative examples. Finally, we discuss data collection and test planning for AI reliability assessment and how to improve system designs for higher AI reliability. The paper closes with some concluding remarks.

cs.SE↗

arXiv2021

Building Degradation Index with Variable Selection for Multivariate Sensory Data

The modeling and analysis of degradation data have been an active research area in reliability and system health management. As the senor technology advances, multivariate sensory data are commonly collected for the underlying degradation process. However, most existing research on degradation modeling requires a univariate degradation index to be provided. Thus, constructing a degradation index for multivariate sensory data is a fundamental step in degradation modeling. In this paper, we propose a novel degradation index building method for multivariate sensory data. Based on an additive nonlinear model with variable selection, the proposed method can automatically select the most informative sensor signals to be used in the degradation index. The penalized likelihood method with adaptive group penalty is developed for parameter estimation. We demonstrate that the proposed method outperforms existing methods via both simulation studies and analyses of the NASA jet engine sensor data.

stat.AP↗

arXiv2021

A Parallel Tempering Approach for Efficient Exploration of the Verification Tradespace in Engineered Systems

Verification is a critical process in the development of engineered systems. Through verification, engineers gain confidence in the correct functionality of the system before it is deployed into operation. Traditionally, verification strategies are fixed at the beginning of the system's development and verification activities are executed as the development progresses. Such an approach appears to give inferior results as the selection of the verification activities does not leverage information gained through the system's development process. In contrast, a set-based design approach to verification, where verification activities are dynamically selected as the system's development progresses, has been shown to provide superior results. However, its application under realistic engineering scenarios remains unproven due to the large size of the verification tradespace. In this work, we propose a parallel tempering approach (PTA) to efficiently explore the verification tradespace. First, we formulate exploration of the verification tradespace as a tree search problem. Second, we design a parallel tempering (PT) algorithm by simulating several replicas of the verification process at different temperatures to obtain a near-optimal result. Third, We apply the PT algorithm to all possible verification states to dynamically identify near-optimal results. The effectiveness of the proposed PTA is evaluated on a partial model of a notional satellite optical instrument.

cs.SE↗

arXiv2021

Robust Estimation of Sparse Precision Matrix using Adaptive Weighted Graphical Lasso Approach

Estimation of a precision matrix (i.e., inverse covariance matrix) is widely used to exploit conditional independence among continuous variables. The influence of abnormal observations is exacerbated in a high dimensional setting as the dimensionality increases. In this work, we propose robust estimation of the inverse covariance matrix based on an $l_1$ regularized objective function with a weighted sample covariance matrix. The robustness of the proposed objective function can be justified by a nonparametric technique of the integrated squared error criterion. To address the non-convexity of the objective function, we develop an efficient algorithm in a similar spirit of majorization-minimization. Asymptotic consistency of the proposed estimator is also established. The performance of the proposed method is compared with several existing approaches via numerical simulations. We further demonstrate the merits of the proposed method with application in genetic network inference.

stat.ME↗

arXiv2021

Efficient Experimental Design for Regularized Linear Models

Regularized linear models, such as Lasso, have attracted great attention in statistical learning and data science. However, there is sporadic work on constructing efficient data collection for regularized linear models. In this work, we propose an experimental design approach, using nearly orthogonal Latin hypercube designs, to enhance the variable selection accuracy of the regularized linear models. Systematic methods for constructing such designs are presented. The effectiveness of the proposed method is illustrated with several examples.

stat.ME↗

arXiv2021

On Efficient Design of Pilot Experiment for Generalized Linear Models

The experimental design for a generalized linear model (GLM) is important but challenging since the design criterion often depends on model specification including the link function, the linear predictor, and the unknown regression coefficients. Prior to constructing locally or globally optimal designs, a pilot experiment is usually conducted to provide some insights on the model specifications. In pilot experiments, little information on the model specification of GLM is available. Surprisingly, there is very limited research on the design of pilot experiments for GLMs. In this work, we obtain some theoretical understanding of the design efficiency in pilot experiments for GLMs. Guided by the theory, we propose to adopt a low-discrepancy design with respect to some target distribution for pilot experiments. The performance of the proposed design is assessed through several numerical examples.

stat.ME↗

arXiv2021

JST-RR Model: Joint Modeling of Ratings and Reviews in Sentiment-Topic Prediction

Analysis of online reviews has attracted great attention with broad applications. Often times, the textual reviews are coupled with the numerical ratings in the data. In this work, we propose a probabilistic model to accommodate both textual reviews and overall ratings with consideration of their intrinsic connection for a joint sentiment-topic prediction. The key of the proposed method is to develop a unified generative model where the topic modeling is constructed based on review texts and the sentiment prediction is obtained by combining review texts and overall ratings. The inference of model parameters are obtained by an efficient Gibbs sampling procedure. The proposed method can enhance the prediction accuracy of review data and achieve an effective detection of interpretable topics and sentiments. The merits of the proposed method are elaborated by the case study from Amazon datasets and simulation studies.

cs.CL↗

arXiv2021

A Generative Approach to Joint Modeling of Quantitative and Qualitative Responses

In many scientific areas, data with quantitative and qualitative (QQ) responses are commonly encountered with a large number of predictors. By exploring the association between QQ responses, existing approaches often consider a joint model of QQ responses given the predictor variables. However, the dependency among predictive variables also provides useful information for modeling QQ responses. In this work, we propose a generative approach to model the joint distribution of the QQ responses and predictors. The proposed generative model provides efficient parameter estimation under a penalized likelihood framework. It achieves accurate classification for qualitative response and accurate prediction for quantitative response with efficient computation. Because of the generative approach framework, the asymptotic optimality of classification and prediction of the proposed method can be established under some regularity conditions. The performance of the proposed method is examined through simulations and real case studies in material science and genetics.

stat.ME↗