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Yang Ning

Publications and source records attributed to Yang Ning.

At least 19 recordsLinked to original sources

Dependable Exploitation of High-Dimensional Unlabeled Data in an Assumption-Lean Framework

Semi-supervised learning has attracted significant attention due to the proliferation of applications featuring limited labeled data but abundant unlabeled data. In this paper, we examine the statistical inference problem in an assumption-lean framework which involves a high-dimensional regression parameter, defined by minimizing the least squares, within the context of semi-supervised learning. We investigate when and how unlabeled data can enhance the estimation efficiency of a regression parameter functional. First, we demonstrate that a straightforward debiased estimator can only be more efficient than its supervised counterpart if the unknown conditional mean function can be consistently estimated at an appropriate rate. Otherwise, incorporating unlabeled data can actually be counterproductive. To address this vulnerability, we propose a novel estimator guaranteed to be at least as efficient as the supervised baseline, even when the conditional mean function is misspecified. This ensures the dependable use of unlabeled data for statistical inference. Finally, we extend our approach to the general M-estimation framework, and demonstrate the effectiveness of our methodology through comprehensive simulation studies and a real data application.

stat.ME

Long-range orbital transport and inverse orbital Hall effect in Co/Ru-based terahertz emitters

The utilization of terahertz (THz) emission spectroscopy in femtosecond photoexcited spintronic heterostructures has emerged as a versatile tool for investigating ultrafast spin-transport in a noncontact and non-invasive manner. However, the investigation of ultrafast orbital-transport is still in the primitive stage. Here, we experimentally demonstrate the orbital-to-charge current conversion in Co/Ru heterostructures. Time-domain measurements reveal delayed and broadened terahertz waveforms with increasing Ru thickness, consistent with long-range orbital transport. In Co/Pt/Ru trilayers, the terahertz emission is further enhanced through constructive interference between the inverse spin Hall effect (ISHE) in Pt and inverse orbital Hall effect (IOHE) in Ru, while reversed stack structures show suppressed output. Ferromagnetic resonance (FMR) measurements reveal a strong correlation between damping and THz amplitude, highlighting efficient angular momentum conversion. These results position Co/Ru as a promising orbitronic platform for tunable ultrafast THz emission. Our results not only strengthen the physical mechanism of condensed matter physics but also pave the way for designing promising spin-orbitronic devices and terahertz emitters.

cond-mat.mtrl-sci

Targeted learning via probabilistic subpopulation matching

In biomedical research, to obtain more accurate prediction results from a target study, leveraging information from multiple similar source studies is proved to be useful. However, in many biomedical applications based on real-world data, populations under consideration in different studies, e.g., clinical sites, can be heterogeneous, leading to challenges in properly borrowing information towards the target study. The state of art methods are typically based on study-level matching to identify source studies that are similar to the target study, whilst samples from source studies that significantly differ from the target study will all be dropped at the study level, which can lead to substantial loss of information. We consider a general situation where all studies are sampled from a super-population composed of distinct subpopulations, and propose a novel framework of targeted learning via subpopulation matching. In contrast to the existing study-level matching methods, measuring similarities between subpopulations can effectively decompose both within- and between-study heterogeneity, allowing incorporation of information from all source studies without dropping any samples as in the existing methods. We devise the proposed framework as a two-step procedure, where a finite mixture model is first fitted jointly across all studies to provide subject-wise probabilistic subpopulation information, followed by a step of within-subpopulation information transferring from source studies to the target study for each identified subpopulation. We establish the non-asymptotic properties of our estimator and demonstrate the ability of our method to improve prediction at the target study via simulation studies.

stat.ME

Distributed inference for heterogeneous mixture models using multi-site data

Mixture models postulate the overall population as a mixture of finite subpopulations with unobserved membership. Fitting mixture models usually requires large sample sizes and combining data from multiple sites can be beneficial. However, sharing individual participant data across sites is often less feasible due to various types of practical constraints, such as data privacy concerns. Moreover, substantial heterogeneity may exist across sites, and locally identified latent classes may not be comparable across sites. We propose a unified modeling framework where a common definition of the latent classes is shared across sites and heterogeneous mixing proportions of latent classes are allowed to account for between-site heterogeneity. To fit the heterogeneous mixture model on multi-site data, we propose a novel distributed Expectation-Maximization (EM) algorithm where at each iteration a density ratio tilted surrogate Q function is constructed to approximate the standard Q function of the EM algorithm as if the data from multiple sites could be pooled together. Theoretical analysis shows that our estimator achieves the same contraction property as the estimators derived from the EM algorithm based on the pooled data.

stat.ME

Machine-Learning-Assisted Comparison of Regression Functions

We revisit the classical problem of comparing regression functions, a fundamental question in statistical inference with broad relevance to modern applications such as data integration, transfer learning, and causal inference. Existing approaches typically rely on smoothing techniques and are thus hindered by the curse of dimensionality. We propose a generalized notion of kernel-based conditional mean dependence that provides a new characterization of the null hypothesis of equal regression functions. Building on this reformulation, we develop two novel tests that leverage modern machine learning methods for flexible estimation. We establish the asymptotic properties of the test statistics, which hold under both fixed- and high-dimensional regimes. Unlike existing methods that often require restrictive distributional assumptions, our framework only imposes mild moment conditions. The efficacy of the proposed tests is demonstrated through extensive numerical studies.

stat.ME

Incorporating External Controls for Estimating the Average Treatment Effect on the Treated with High-Dimensional Data: Retaining Double Robustness and Ensuring Double Safety

Randomized controlled trials (RCTs) are widely regarded as the gold standard for causal inference in biomedical research. For instance, when estimating the average treatment effect on the treated (ATT), a doubly robust estimation procedure can be applied, requiring either the propensity score model or the control outcome model to be correctly specified. In this paper, we address scenarios where external control data, often with a much larger sample size, are available. Such data are typically easier to obtain from historical records or third-party sources. However, we find that incorporating external controls into the standard doubly robust estimator for ATT may paradoxically result in reduced efficiency compared to using the estimator without external controls. This counterintuitive outcome suggests that the naive incorporation of external controls could be detrimental to estimation efficiency. To resolve this issue, we propose a novel doubly robust estimator that guarantees higher efficiency than the standard approach without external controls, even under model misspecification. When all models are correctly specified, this estimator aligns with the standard doubly robust estimator that incorporates external controls and achieves semiparametric efficiency. The asymptotic theory developed in this work applies to high-dimensional confounder settings, which are increasingly common with the growing prevalence of electronic health record data. We demonstrate the effectiveness of our methodology through extensive simulation studies and a real-world data application.

stat.ME

G-HIVE: Parameter Estimation and Approximate Inference for Multivariate Response Generalized Linear Models with Hidden Variables

In practice, there often exist unobserved variables, also termed hidden variables, associated with both the response and covariates. Existing works in the literature mostly focus on linear regression with hidden variables. However, when the regression model is non-linear, the presence of hidden variables leads to new challenges in parameter identification, estimation, and statistical inference. This paper studies multivariate response generalized linear models (GLMs) with hidden variables. We propose a unified framework for parameter estimation and statistical inference called G-HIVE, short for 'G'eneralized - 'HI'dden 'V'ariable adjusted 'E'stimation. Specifically, based on factor model assumptions, we propose a modified quasi-likelihood approach to estimate an intermediate parameter, defined through a set of reweighted estimating equations. The key of our approach is to construct the proper weight, so that the first-order asymptotic bias of the estimator can be removed by orthogonal projection. Moreover, we propose an approximate inference framework for uncertainty quantification. Theoretically, we establish the first-order and second-order asymptotic bias and the convergence rate of our estimator. In addition, we characterize the accuracy of the Gaussian approximation of our estimator via the Berry-Esseen bound, which justifies the validity of the proposed approximate inference approach. Extensive simulations and real data analysis results show that G-HIVE is feasibly implementable and can outperform the baseline method that ignores hidden variables.

stat.ME

Transfer Learning for Classification under Decision Rule Drift with Application to Optimal Individualized Treatment Rule Estimation

In this paper, we extend the transfer learning classification framework from regression function-based methods to decision rules. We propose a novel methodology for modeling posterior drift through Bayes decision rules. By exploiting the geometric transformation of the Bayes decision boundary, our method reformulates the problem as a low-dimensional empirical risk minimization problem. Under mild regularity conditions, we establish the consistency of our estimators and derive the risk bounds. Moreover, we illustrate the broad applicability of our method by adapting it to the estimation of optimal individualized treatment rules. Extensive simulation studies and analyses of real-world data further demonstrate both superior performance and robustness of our approach.

stat.ML

Optimal Sampling for Generalized Linear Model under Measurement Constraint with Surrogate Variables

Measurement-constrained datasets, often encountered in semi-supervised learning, arise when data labeling is costly, time-intensive, or hindered by confidentiality or ethical concerns, resulting in a scarcity of labeled data. In certain cases, surrogate variables are accessible across the entire dataset and can serve as approximations to the true response variable; however, these surrogates often contain measurement errors and thus cannot be directly used for accurate prediction. We propose an optimal sampling strategy that effectively harnesses the available information from surrogate variables. This approach provides consistent estimators under the assumption of a generalized linear model, achieving theoretically lower asymptotic variance than existing optimal sampling algorithms that do not use surrogate data information. By employing the A-optimality criterion from optimal experimental design, our strategy maximizes statistical efficiency. Numerical studies demonstrate that our approach surpasses existing optimal sampling methods, exhibiting reduced empirical mean squared error and enhanced robustness in algorithmic performance. These findings highlight the practical advantages of our strategy in scenarios where measurement constraints exist and surrogates are available.

stat.ME

Active Subsampling for Measurement-Constrained M-Estimation of Individualized Thresholds with High-Dimensional Data

Measurement-constrained problems frequently arise in modern applications such as electronic health record studies. In such problems, despite the availability of large datasets, collecting labeled data can be highly costly or time-consuming, allowing only a small portion of the data to be labeled within a given budget. This raises a critical question: which data points are most beneficial to label given the budget constraint? We study this question in the context of estimating an optimal individualized threshold under a measurement-constrained M-estimation framework. In particular, our goal is to estimate a high-dimensional parameter $\theta$ in a linear threshold $\theta^TZ$ for a continuous variable $X$ such that the discrepancy between whether $X$ exceeds the threshold $\theta^TZ$ and a binary outcome $Y$ is minimized. In the measurement-constrained setting, we propose a novel $K$-step active subsampling algorithm to estimate $\theta$, which iteratively samples the most informative observations in the dataset and solves a regularized M-estimator. Our theoretical analysis reveals a sharp phase transition phenomenon with respect to $\beta$, the smoothness of the conditional density of $X$ given $Y$ and $Z$. Please see the paper for the full abstract.

math.ST

Inference with non-differentiable surrogate loss in a general high-dimensional classification framework

Penalized empirical risk minimization with a surrogate loss function is often used to learn a high-dimensional linear decision rule in classification problems. Although much of the literature focus on the generalization error, there is a lack of inference procedures for identifying the driving factors of the estimated decision rule, especially when the surrogate loss is non-differentiable. We propose a kernel-smoothed decorrelated score to construct hypothesis tests and interval estimators for a linear decision rule estimated using a piece-wise linear surrogate loss, which has a discontinuous gradient and non-regular Hessian. Specifically, we adopt kernel approximations to smooth the discontinuous gradient near discontinuity points and approximate the non-regular Hessian of the surrogate loss. In applications where additional nuisance parameters are involved, we propose a novel cross-fitted version to accommodate flexible nuisance estimates and kernel approximations. We establish the limiting distribution of the kernel-smoothed decorrelated score and its cross-fitted version in a high-dimensional setup. Simulation and real data analysis are conducted to demonstrate the validity and the superiority of the proposed method.

stat.ME

Two-stage Hypothesis Tests for Variable Interactions with FDR Control

In many scenarios such as genome-wide association studies where dependences between variables commonly exist, it is often of interest to infer the interaction effects in the model. However, testing pairwise interactions among millions of variables in complex and high-dimensional data suffers from low statistical power and huge computational cost. To address these challenges, we propose a two-stage testing procedure with false discovery rate (FDR) control, which is known as a less conservative multiple-testing correction. Theoretically, the difficulty in the FDR control dues to the data dependence among test statistics in two stages, and the fact that the number of hypothesis tests conducted in the second stage depends on the screening result in the first stage. By using the Cram\'er type moderate deviation technique, we show that our procedure controls FDR at the desired level asymptotically in the generalized linear model (GLM), where the model is allowed to be misspecified. In addition, the asymptotic power of the FDR control procedure is rigorously established. We demonstrate via comprehensive simulation studies that our two-stage procedure is computationally more efficient than the classical BH procedure, with a comparable or improved statistical power. Finally, we apply the proposed method to a bladder cancer data from dbGaP where the scientific goal is to identify genetic susceptibility loci for bladder cancer.

stat.ME

Treatment Effect Estimation with Unobserved and Heterogeneous Confounding Variables

The estimation of the treatment effect is often biased in the presence of unobserved confounding variables which are commonly referred to as hidden variables. Although a few methods have been recently proposed to handle the effect of hidden variables, these methods often overlook the possibility of any interaction between the observed treatment variable and the unobserved covariates. In this work, we address this shortcoming by studying a multivariate response regression problem with both unobserved and heterogeneous confounding variables of the form $Y=A^T X+ B^T Z+ \sum_{j=1}^{p} C^T_j X_j Z + E$, where $Y \in \mathbb{R}^m$ are $m$-dimensional response variables, $X \in \mathbb{R}^p$ are observed covariates (including the treatment variable), $Z \in \mathbb{R}^K$ are $K$-dimensional unobserved confounders, and $E \in \mathbb{R}^m$ is the random noise. Allowing for the interaction between $X_j$ and $Z$ induces the heterogeneous confounding effect. Our goal is to estimate the unknown matrix $A$, the direct effect of the observed covariates or the treatment on the responses. To this end, we propose a new debiased estimation approach via SVD to remove the effect of unobserved confounding variables. The rate of convergence of the estimator is established under both the homoscedastic and heteroscedastic noises. We also present several simulation experiments and a real-world data application to substantiate our findings.

stat.ME

Inference in High-dimensional Multivariate Response Regression with Hidden Variables

This paper studies the inference of the regression coefficient matrix under multivariate response linear regressions in the presence of hidden variables. A novel procedure for constructing confidence intervals of entries of the coefficient matrix is proposed. Our method first utilizes the multivariate nature of the responses by estimating and adjusting the hidden effect to construct an initial estimator of the coefficient matrix. By further deploying a low-dimensional projection procedure to reduce the bias introduced by the regularization in the previous step, a refined estimator is proposed and shown to be asymptotically normal. The asymptotic variance of the resulting estimator is derived with closed-form expression and can be consistently estimated. In addition, we propose a testing procedure for the existence of hidden effects and provide its theoretical justification. Both our procedures and their analyses are valid even when the feature dimension and the number of responses exceed the sample size. Our results are further backed up via extensive simulations and a real data analysis.

stat.ME

Optimal Variable Clustering for High-Dimensional Matrix Valued Data

Matrix valued data has become increasingly prevalent in many applications. Most of the existing clustering methods for this type of data are tailored to the mean model and do not account for the dependence structure of the features, which can be very informative, especially in high-dimensional settings or when mean information is not available. To extract the information from the dependence structure for clustering, we propose a new latent variable model for the features arranged in matrix form, with some unknown membership matrices representing the clusters for the rows and columns. Under this model, we further propose a class of hierarchical clustering algorithms using the difference of a weighted covariance matrix as the dissimilarity measure. Theoretically, we show that under mild conditions, our algorithm attains clustering consistency in the high-dimensional setting. While this consistency result holds for our algorithm with a broad class of weighted covariance matrices, the conditions for this result depend on the choice of the weight. To investigate how the weight affects the theoretical performance of our algorithm, we establish the minimax lower bound for clustering under our latent variable model in terms of some cluster separation metric. Given these results, we identify the optimal weight in the sense that using this weight guarantees our algorithm to be minimax rate-optimal. The practical implementation of our algorithm with the optimal weight is also discussed. Simulation studies show that our algorithm performs better than existing methods in terms of the adjusted Rand index (ARI). The method is applied to a genomic dataset and yields meaningful interpretations.

stat.ML

Test of Significance for High-dimensional Thresholds with Application to Individualized Minimal Clinically Important Difference

This work is motivated by learning the individualized minimal clinically important difference, a vital concept to assess clinical importance in various biomedical studies. We formulate the scientific question into a high-dimensional statistical problem where the parameter of interest lies in an individualized linear threshold. The goal is to develop a hypothesis testing procedure for the significance of a single element in this parameter as well as of a linear combination of this parameter. The difficulty dues to the high-dimensional nuisance in developing such a testing procedure, and also stems from the fact that this high-dimensional threshold model is nonregular and the limiting distribution of the corresponding estimator is nonstandard. To deal with these challenges, we construct a test statistic via a new bias-corrected smoothed decorrelated score approach, and establish its asymptotic distributions under both null and local alternative hypotheses. We propose a double-smoothing approach to select the optimal bandwidth in our test statistic and provide theoretical guarantees for the selected bandwidth. We conduct simulation studies to demonstrate how our proposed procedure can be applied in empirical studies. We apply the proposed method to a clinical trial where the scientific goal is to assess the clinical importance of a surgery procedure.

stat.ME

Optimal Covariate Balancing Conditions in Propensity Score Estimation

Inverse probability of treatment weighting (IPTW) is a popular method for estimating the average treatment effect (ATE). However, empirical studies show that the IPTW estimators can be sensitive to the misspecification of the propensity score model. To address this problem, researchers have proposed to estimate propensity score by directly optimizing the balance of pre-treatment covariates. While these methods appear to empirically perform well, little is known about how the choice of balancing conditions affects their theoretical properties. To fill this gap, we first characterize the asymptotic bias and efficiency of the IPTW estimator based on the Covariate Balancing Propensity Score (CBPS) methodology under local model misspecification. Based on this analysis, we show how to optimally choose the covariate balancing functions and propose an optimal CBPS-based IPTW estimator. This estimator is doubly robust; it is consistent for the ATE if either the propensity score model or the outcome model is correct. In addition, the proposed estimator is locally semiparametric efficient when both models are correctly specified. To further relax the parametric assumptions, we extend our method by using a sieve estimation approach. We show that the resulting estimator is globally efficient under a set of much weaker assumptions and has a smaller asymptotic bias than the existing estimators. Finally, we evaluate the finite sample performance of the proposed estimators via simulation and empirical studies. An open-source software package is available for implementing the proposed methods.

stat.ME

On the global identifiability of logistic regression models with misclassified outcomes

In the last decade, the secondary use of large data from health systems, such as electronic health records, has demonstrated great promise in advancing biomedical discoveries and improving clinical decision making. However, there is an increasing concern about biases in association studies caused by misclassification in the binary outcomes derived from electronic health records. We revisit the classical logistic regression model with misclassified outcomes. Despite that local identification conditions in some related settings have been previously established, the global identification of such models remains largely unknown and is an important question yet to be answered. We derive necessary and sufficient conditions for global identifiability of logistic regression models with misclassified outcomes, using a novel approach termed as the submodel analysis, and a technique adapted from the Picard-Lindel\"{o}f existence theorem in ordinary differential equations. In particular, our results are applicable to logistic models with discrete covariates, which is a common situation in biomedical studies, The conditions are easy to verify in practice. In addition to model identifiability, we propose a hypothesis testing procedure for regression coefficients in the misclassified logistic regression model when the model is not identifiable under the null.

math.ST