arXiv subjects

Yang Ning

Publications and source records attributed to Yang Ning.

At least 37 records · Page 2Linked to original sources

arXiv2021

Estimation and inference on high-dimensional individualized treatment rule in observational data using split-and-pooled de-correlated score

With the increasing adoption of electronic health records, there is an increasing interest in developing individualized treatment rules, which recommend treatments according to patients' characteristics, from large observational data. However, there is a lack of valid inference procedures for such rules developed from this type of data in the presence of high-dimensional covariates. In this work, we develop a penalized doubly robust method to estimate the optimal individualized treatment rule from high-dimensional data. We propose a split-and-pooled de-correlated score to construct hypothesis tests and confidence intervals. Our proposal utilizes the data splitting to conquer the slow convergence rate of nuisance parameter estimations, such as non-parametric methods for outcome regression or propensity models. We establish the limiting distributions of the split-and-pooled de-correlated score test and the corresponding one-step estimator in high-dimensional setting. Simulation and real data analysis are conducted to demonstrate the superiority of the proposed method.

stat.ME↗

arXiv2021

Heterogeneity-aware and communication-efficient distributed statistical inference

In multicenter research, individual-level data are often protected against sharing across sites. To overcome the barrier of data sharing, many distributed algorithms, which only require sharing aggregated information, have been developed. The existing distributed algorithms usually assume the data are homogeneously distributed across sites. This assumption ignores the important fact that the data collected at different sites may come from various sub-populations and environments, which can lead to heterogeneity in the distribution of the data. Ignoring the heterogeneity may lead to erroneous statistical inference. In this paper, we propose distributed algorithms which account for the heterogeneous distributions by allowing site-specific nuisance parameters. The proposed methods extend the surrogate likelihood approach to the heterogeneous setting by applying a novel density ratio tilting method to the efficient score function. The proposed algorithms maintain the same communication cost as the existing communication-efficient algorithms. We establish a non-asymptotic risk bound for the proposed distributed estimator and its limiting distribution in the two-index asymptotic setting which allows both sample size per site and the number of sites to go to infinity. In addition, we show that the asymptotic variance of the estimator attains the Cramér-Rao lower bound when the number of sites is in rate smaller than the sample size at each site. Finally, we use simulation studies and a real data application to demonstrate the validity and feasibility of the proposed methods.

stat.ME↗

arXiv2021

On the global identifiability of logistic regression models with misclassified outcomes

In the last decade, the secondary use of large data from health systems, such as electronic health records, has demonstrated great promise in advancing biomedical discoveries and improving clinical decision making. However, there is an increasing concern about biases in association studies caused by misclassification in the binary outcomes derived from electronic health records. We revisit the classical logistic regression model with misclassified outcomes. Despite that local identification conditions in some related settings have been previously established, the global identification of such models remains largely unknown and is an important question yet to be answered. We derive necessary and sufficient conditions for global identifiability of logistic regression models with misclassified outcomes, using a novel approach termed as the submodel analysis, and a technique adapted from the Picard-Lindelöf existence theorem in ordinary differential equations. In particular, our results are applicable to logistic models with discrete covariates, which is a common situation in biomedical studies, The conditions are easy to verify in practice. In addition to model identifiability, we propose a hypothesis testing procedure for regression coefficients in the misclassified logistic regression model when the model is not identifiable under the null.

math.ST↗

arXiv2021

Adaptive Estimation in Multivariate Response Regression with Hidden Variables

This paper studies the estimation of the coefficient matrix $\Ttheta$ in multivariate regression with hidden variables, $Y = (\Ttheta)^TX + (B^*)^TZ + E$, where $Y$ is a $m$-dimensional response vector, $X$ is a $p$-dimensional vector of observable features, $Z$ represents a $K$-dimensional vector of unobserved hidden variables, possibly correlated with $X$, and $E$ is an independent error. The number of hidden variables $K$ is unknown and both $m$ and $p$ are allowed but not required to grow with the sample size $n$. Since only $Y$ and $X$ are observable, we provide necessary conditions for the identifiability of $\Ttheta$. The same set of conditions are shown to be sufficient when the error $E$ is homoscedastic. Our identifiability proof is constructive and leads to a novel and computationally efficient estimation algorithm, called HIVE. The first step of the algorithm is to estimate the best linear prediction of $Y$ given $X$ in which the unknown coefficient matrix exhibits an additive decomposition of $\Ttheta$ and a dense matrix originated from the correlation between $X$ and the hidden variable $Z$. Under the row sparsity assumption on $\Ttheta$, we propose to minimize a penalized least squares loss by regularizing $\Ttheta$ via a group-lasso penalty and regularizing the dense matrix via a multivariate ridge penalty. Non-asymptotic deviation bounds of the in-sample prediction error are established. Our second step is to estimate the row space of $B^*$ by leveraging the covariance structure of the residual vector from the first step. In the last step, we remove the effect of hidden variable by projecting $Y$ onto the complement of the estimated row space of $B^*$. Non-asymptotic error bounds of our final estimator are established. The model identifiability, parameter estimation and statistical guarantees are further extended to the setting with heteroscedastic errors.

math.ST↗

arXiv2020

Exponential Family Graphical Models: Correlated Replicates and Unmeasured Confounders, with Applications to fMRI Data

Graphical models have been used extensively for modeling brain connectivity networks. However, unmeasured confounders and correlations among measurements are often overlooked during model fitting, which may lead to spurious scientific discoveries. Motivated by functional magnetic resonance imaging (fMRI) studies, we propose a novel method for constructing brain connectivity networks with correlated replicates and latent effects. In a typical fMRI study, each participant is scanned and fMRI measurements are collected across a period of time. In many cases, subjects may have different states of mind that cannot be measured during the brain scan: for instance, some subjects may be awake during the first half of the brain scan, and may fall asleep during the second half of the brain scan. To model the correlation among replicates and latent effects induced by the different states of mind, we assume that the correlated replicates within each independent subject follow a one-lag vector autoregressive model, and that the latent effects induced by the unmeasured confounders are piecewise constant. The proposed method results in a convex optimization problem which we solve using a block coordinate descent algorithm. Theoretical guarantees are established for parameter estimation. We demonstrate via extensive numerical studies that our method is able to estimate latent variable graphical models with correlated replicates more accurately than existing methods.

stat.ME↗

arXiv2020

Doubly Robust Semiparametric Difference-in-Differences Estimators with High-Dimensional Data

This paper proposes a doubly robust two-stage semiparametric difference-in-difference estimator for estimating heterogeneous treatment effects with high-dimensional data. Our new estimator is robust to model miss-specifications and allows for, but does not require, many more regressors than observations. The first stage allows a general set of machine learning methods to be used to estimate the propensity score. In the second stage, we derive the rates of convergence for both the parametric parameter and the unknown function under a partially linear specification for the outcome equation. We also provide bias correction procedures to allow for valid inference for the heterogeneous treatment effects. We evaluate the finite sample performance with extensive simulation studies. Additionally, a real data analysis on the effect of Fair Minimum Wage Act on the unemployment rate is performed as an illustration of our method. An R package for implementing the proposed method is available on Github.

econ.EM↗

arXiv2020

Sparse Confidence Sets for Normal Mean Models

In this paper, we propose a new framework to construct confidence sets for a $d$-dimensional unknown sparse parameter $θ$ under the normal mean model $X\sim N(θ,σ^2I)$. A key feature of the proposed confidence set is its capability to account for the sparsity of $θ$, thus named as {\em sparse} confidence set. This is in sharp contrast with the classical methods, such as Bonferroni confidence intervals and other resampling based procedures, where the sparsity of $θ$ is often ignored. Specifically, we require the desired sparse confidence set to satisfy the following two conditions: (i) uniformly over the parameter space, the coverage probability for $θ$ is above a pre-specified level; (ii) there exists a random subset $S$ of $\{1,...,d\}$ such that $S$ guarantees the pre-specified true negative rate (TNR) for detecting nonzero $θ_j$'s. To exploit the sparsity of $θ$, we define that the confidence interval for $θ_j$ degenerates to a single point 0 for any $j\notin S$. Under this new framework, we first consider whether there exist sparse confidence sets that satisfy the above two conditions. To address this question, we establish a non-asymptotic minimax lower bound for the non-coverage probability over a suitable class of sparse confidence sets. The lower bound deciphers the role of sparsity and minimum signal-to-noise ratio (SNR) in the construction of sparse confidence sets. Furthermore, under suitable conditions on the SNR, a two-stage procedure is proposed to construct a sparse confidence set. To evaluate the optimality, the proposed sparse confidence set is shown to attain a minimax lower bound of some properly defined risk function up to a constant factor. Finally, we develop an adaptive procedure to the unknown sparsity and SNR. Numerical studies are conducted to verify the theoretical results.

math.ST↗

arXiv2020

High-Dimensional Inference for Cluster-Based Graphical Models

Motivated by modern applications in which one constructs graphical models based on a very large number of features, this paper introduces a new class of cluster-based graphical models, in which variable clustering is applied as an initial step for reducing the dimension of the feature space. We employ model assisted clustering, in which the clusters contain features that are similar to the same unobserved latent variable. Two different cluster-based Gaussian graphical models are considered: the latent variable graph, corresponding to the graphical model associated with the unobserved latent variables, and the cluster-average graph, corresponding to the vector of features averaged over clusters. Our study reveals that likelihood based inference for the latent graph, not analyzed previously, is analytically intractable. Our main contribution is the development and analysis of alternative estimation and inference strategies, for the precision matrix of an unobservable latent vector $Z$. We replace the likelihood of the data by an appropriate class of empirical risk functions, that can be specialized to the latent graphical model and to the simpler, but under-analyzed, cluster-average graphical model. The estimators thus derived can be used for inference on the graph structure, for instance on edge strength or pattern recovery. Inference is based on the asymptotic limits of the entry-wise estimates of the precision matrices associated with the conditional independence graphs under consideration. While taking the uncertainty induced by the clustering step into account, we establish Berry-Esseen central limit theorems for the proposed estimators. It is noteworthy that, although the clusters are estimated adaptively from the data, the central limit theorems regarding the entries of the estimated graphs are proved under the same conditions one would use if the clusters were known....

stat.ML↗

arXiv2020

Optimal Sampling for Generalized Linear Models under Measurement Constraints

Under "measurement constraints," responses are expensive to measure and initially unavailable on most of records in the dataset, but the covariates are available for the entire dataset. Our goal is to sample a relatively small portion of the dataset where the expensive responses will be measured and the resultant sampling estimator is statistically efficient. Measurement constraints require the sampling probabilities can only depend on a very small set of the responses. A sampling procedure that uses responses at most only on a small pilot sample will be called "response-free." We propose a response-free sampling procedure \mbox{(OSUMC)} for generalized linear models (GLMs). Using the A-optimality criterion, i.e., the trace of the asymptotic variance, the resultant estimator is statistically efficient within a class of sampling estimators. We establish the unconditional asymptotic distribution of a general class of response-free sampling estimators. This result is novel compared with the existing conditional results obtained by conditioning on both covariates and responses. Under our unconditional framework, the subsamples are no longer independent and new martingale techniques are developed for our asymptotic theory. We further derive the A-optimal response-free sampling distribution. Since this distribution depends on population level quantities, we propose the Optimal Sampling Under Measurement Constraints (OSUMC) algorithm to approximate the theoretical optimal sampling. Finally, we conduct an intensive empirical study to demonstrate the advantages of OSUMC algorithm over existing methods in both statistical and computational perspectives.

stat.ME↗

arXiv2020

Regularized Training and Tight Certification for Randomized Smoothed Classifier with Provable Robustness

Recently smoothing deep neural network based classifiers via isotropic Gaussian perturbation is shown to be an effective and scalable way to provide state-of-the-art probabilistic robustness guarantee against $\ell_2$ norm bounded adversarial perturbations. However, how to train a good base classifier that is accurate and robust when smoothed has not been fully investigated. In this work, we derive a new regularized risk, in which the regularizer can adaptively encourage the accuracy and robustness of the smoothed counterpart when training the base classifier. It is computationally efficient and can be implemented in parallel with other empirical defense methods. We discuss how to implement it under both standard (non-adversarial) and adversarial training scheme. At the same time, we also design a new certification algorithm, which can leverage the regularization effect to provide tighter robustness lower bound that holds with high probability. Our extensive experimentation demonstrates the effectiveness of the proposed training and certification approaches on CIFAR-10 and ImageNet datasets.

stat.ML↗

arXiv2019

Regression Discontinuity Design under Self-selection

In Regression Discontinuity (RD) design, self-selection leads to different distributions of covariates on two sides of the policy intervention, which essentially violates the continuity of potential outcome assumption. The standard RD estimand becomes difficult to interpret due to the existence of some indirect effect, i.e. the effect due to self selection. We show that the direct causal effect of interest can still be recovered under a class of estimands. Specifically, we consider a class of weighted average treatment effects tailored for potentially different target populations. We show that a special case of our estimands can recover the average treatment effect under the conditional independence assumption per Angrist and Rokkanen (2015), and another example is the estimand recently proposed in Frölich and Huber (2018). We propose a set of estimators through a weighted local linear regression framework and prove the consistency and asymptotic normality of the estimators. Our approach can be further extended to the fuzzy RD case. In simulation exercises, we compare the performance of our estimator with the standard RD estimator. Finally, we apply our method to two empirical data sets: the U.S. House elections data in Lee (2008) and a novel data set from Microsoft Bing on Generalized Second Price (GSP) auction.

stat.ME↗

arXiv2019

Adaptive Estimation in Structured Factor Models with Applications to Overlapping Clustering

This work introduces a novel estimation method, called LOVE, of the entries and structure of a loading matrix A in a sparse latent factor model X = AZ + E, for an observable random vector X in Rp, with correlated unobservable factors Z \in RK, with K unknown, and independent noise E. Each row of A is scaled and sparse. In order to identify the loading matrix A, we require the existence of pure variables, which are components of X that are associated, via A, with one and only one latent factor. Despite the fact that the number of factors K, the number of the pure variables, and their location are all unknown, we only require a mild condition on the covariance matrix of Z, and a minimum of only two pure variables per latent factor to show that A is uniquely defined, up to signed permutations. Our proofs for model identifiability are constructive, and lead to our novel estimation method of the number of factors and of the set of pure variables, from a sample of size n of observations on X. This is the first step of our LOVE algorithm, which is optimization-free, and has low computational complexity of order p2. The second step of LOVE is an easily implementable linear program that estimates A. We prove that the resulting estimator is minimax rate optimal up to logarithmic factors in p. The model structure is motivated by the problem of overlapping variable clustering, ubiquitous in data science. We define the population level clusters as groups of those components of X that are associated, via the sparse matrix A, with the same unobservable latent factor, and multi-factor association is allowed. Clusters are respectively anchored by the pure variables, and form overlapping sub-groups of the p-dimensional random vector X. The Latent model approach to OVErlapping clustering is reflected in the name of our algorithm, LOVE.

stat.ME↗

arXiv2019

Nonregular and Minimax Estimation of Individualized Thresholds in High Dimension with Binary Responses

Given a large number of covariates $Z$, we consider the estimation of a high-dimensional parameter $θ$ in an individualized linear threshold $θ^T Z$ for a continuous variable $X$, which minimizes the disagreement between $\text{sign}(X-θ^TZ)$ and a binary response $Y$. While the problem can be formulated into the M-estimation framework, minimizing the corresponding empirical risk function is computationally intractable due to discontinuity of the sign function. Moreover, estimating $θ$ even in the fixed-dimensional setting is known as a nonregular problem leading to nonstandard asymptotic theory. To tackle the computational and theoretical challenges in the estimation of the high-dimensional parameter $θ$, we propose an empirical risk minimization approach based on a regularized smoothed loss function. The statistical and computational trade-off of the algorithm is investigated. Statistically, we show that the finite sample error bound for estimating $θ$ in $\ell_2$ norm is $(s\log d/n)^{β/(2β+1)}$, where $d$ is the dimension of $θ$, $s$ is the sparsity level, $n$ is the sample size and $β$ is the smoothness of the conditional density of $X$ given the response $Y$ and the covariates $Z$. The convergence rate is nonstandard and slower than that in the classical Lasso problems. Furthermore, we prove that the resulting estimator is minimax rate optimal up to a logarithmic factor. The Lepski's method is developed to achieve the adaption to the unknown sparsity $s$ and smoothness $β$. Computationally, an efficient path-following algorithm is proposed to compute the solution path. We show that this algorithm achieves geometric rate of convergence for computing the whole path. Finally, we evaluate the finite sample performance of the proposed estimator in simulation studies and a real data analysis.

math.ST↗

arXiv2019

Efficient augmentation and relaxation learning for individualized treatment rules using observational data

Individualized treatment rules aim to identify if, when, which, and to whom treatment should be applied. A globally aging population, rising healthcare costs, and increased access to patient-level data have created an urgent need for high-quality estimators of individualized treatment rules that can be applied to observational data. A recent and promising line of research for estimating individualized treatment rules recasts the problem of estimating an optimal treatment rule as a weighted classification problem. We consider a class of estimators for optimal treatment rules that are analogous to convex large-margin classifiers. The proposed class applies to observational data and is doubly-robust in the sense that correct specification of either a propensity or outcome model leads to consistent estimation of the optimal individualized treatment rule. Using techniques from semiparametric efficiency theory, we derive rates of convergence for the proposed estimators and use these rates to characterize the bias-variance trade-off for estimating individualized treatment rules with classification-based methods. Simulation experiments informed by these results demonstrate that it is possible to construct new estimators within the proposed framework that significantly outperform existing ones. We illustrate the proposed methods using data from a labor training program and a study of inflammatory bowel syndrome.

stat.ME↗

arXiv2018

Robust Estimation of Causal Effects via High-Dimensional Covariate Balancing Propensity Score

In this paper, we propose a robust method to estimate the average treatment effects in observational studies when the number of potential confounders is possibly much greater than the sample size. We first use a class of penalized M-estimators for the propensity score and outcome models. We then calibrate the initial estimate of the propensity score by balancing a carefully selected subset of covariates that are predictive of the outcome. Finally, the estimated propensity score is used to construct the inverse probability weighting estimator. We prove that the proposed estimator, which has the sample boundedness property, is root-n consistent, asymptotically normal, and semiparametrically efficient when the propensity score model is correctly specified and the outcome model is linear in covariates. More importantly, we show that our estimator remains root-n consistent and asymptotically normal so long as either the propensity score model or the outcome model is correctly specified. We provide valid confidence intervals in both cases and further extend these results to the case where the outcome model is a generalized linear model. In simulation studies, we find that the proposed methodology often estimates the average treatment effect more accurately than the existing methods. We also present an empirical application, in which we estimate the average causal effect of college attendance on adulthood political participation. Open-source software is available for implementing the proposed methodology.

stat.ME↗

arXiv2017

Penalized pairwise pseudo likelihood for variable selection with nonignorable missing data

The regularization approach for variable selection was well developed for a completely observed data set in the past two decades. In the presence of missing values, this approach needs to be tailored to different missing data mechanisms. In this paper, we focus on a flexible and generally applicable missing data mechanism, which contains both ignorable and nonignorable missing data mechanism assumptions. We show how the regularization approach for variable selection can be adapted to the situation under this missing data mechanism. The computational and theoretical properties for variable selection consistency are established. The proposed method is further illustrated by comprehensive simulation studies and real data analyses, for both low and high dimensional settings.

stat.ME↗

arXiv2016

A Unified Theory of Confidence Regions and Testing for High Dimensional Estimating Equations

We propose a new inferential framework for constructing confidence regions and testing hypotheses in statistical models specified by a system of high dimensional estimating equations. We construct an influence function by projecting the fitted estimating equations to a sparse direction obtained by solving a large-scale linear program. Our main theoretical contribution is to establish a unified Z-estimation theory of confidence regions for high dimensional problems. Different from existing methods, all of which require the specification of the likelihood or pseudo-likelihood, our framework is likelihood-free. As a result, our approach provides valid inference for a broad class of high dimensional constrained estimating equation problems, which are not covered by existing methods. Such examples include, noisy compressed sensing, instrumental variable regression, undirected graphical models, discriminant analysis and vector autoregressive models. We present detailed theoretical results for all these examples. Finally, we conduct thorough numerical simulations, and a real dataset analysis to back up the developed theoretical results.

math.ST↗

arXiv2015

A Likelihood Ratio Framework for High Dimensional Semiparametric Regression

We propose a likelihood ratio based inferential framework for high dimensional semiparametric generalized linear models. This framework addresses a variety of challenging problems in high dimensional data analysis, including incomplete data, selection bias, and heterogeneous multitask learning. Our work has three main contributions. (i) We develop a regularized statistical chromatography approach to infer the parameter of interest under the proposed semiparametric generalized linear model without the need of estimating the unknown base measure function. (ii) We propose a new framework to construct post-regularization confidence regions and tests for the low dimensional components of high dimensional parameters. Unlike existing post-regularization inferential methods, our approach is based on a novel directional likelihood. In particular, the framework naturally handles generic regularized estimators with nonconvex penalty functions and it can be used to infer least false parameters under misspecified models. (iii) We develop new concentration inequalities and normal approximation results for U-statistics with unbounded kernels, which are of independent interest. We demonstrate the consequences of the general theory by using an example of missing data problem. Extensive simulation studies and real data analysis are provided to illustrate our proposed approach.

stat.ML↗