SearcharxivSearch

arXiv subjects

Yicheng Qiang

Publications and source records attributed to Yicheng Qiang.

11 recordsLinked to original sources

Coexistence of patterned phases in chemically active multicomponent mixtures

Chemically active mixtures exhibit complex patterns that emerge from the interplay of physical interactions and reactions among components. Individually, these two processes are well-understood: Physical interactions can give rise to phase separation, whereas reactions can form reaction-diffusion patterns. To understand the combination of both processes, we identify a Lyapunov functional for a class of chemical reactions. By minimizing this functional, we identify a generalized Gibbs phase rule that governs the number of coexisting patterns, and we demonstrate that complex patterns can be created by the modular combination of independent phases. Our theory unveils complex stationary patterns in chemically active mixtures and provides a framework for analyzing more complex systems.

cond-mat.soft

Advection selects pattern in multistable emulsions of active droplets

Controlling the size of droplets, for example in biological cells, is challenging because large droplets typically outcompete smaller droplets due to surface tension. This coarsening is generally accelerated by hydrodynamic effects, but active chemical reactions can suppress it. We show that the interplay of these processes leads to three different dynamical regimes: (1) Advection dominates the coalescence of small droplets, (2) diffusion leads to Ostwald ripening for intermediate sizes, and (3) reactions finally suppress coarsening. Interestingly, a range of final droplet sizes is stable, of which one is selected depending on initial conditions. Our analysis demonstrates that hydrodynamic effects control initial droplet sizes, but they do not affect the later dynamics, in contrast to passive emulsions.

cond-mat.soft

Roadmap for Condensates in Cell Biology

Biomolecular condensates govern essential cellular processes yet elude description by traditional equilibrium models. This roadmap, distilled from structured discussions at a workshop and reflecting the consensus of its participants, clarifies key concepts for researchers, funding bodies, and journals. After unifying terminology that often separates disciplines, we outline the core physics of condensate formation, review their biological roles, and identify outstanding challenges in nonequilibrium theory, multiscale simulation, and quantitative in-cell measurements. We close with a forward-looking outlook to guide coordinated efforts toward predictive, experimentally anchored understanding and control of biomolecular condensates.

physics.bio-ph

Molecular simulations of phase separation in elastic polymer networks

Phase separation within polymer networks plays a central role in shaping the structure and mechanics of both synthetic materials and living cells, including the formation of biomolecular condensates within cytoskeletal networks. Previous experiments and theoretical studies indicate that network elasticity can regulate demixing and stabilize finite-sized domains, yet the microscopic origin of this size selection remains elusive. Here, we use coarse-grained molecular dynamics simulations with implicit solvent to investigate how network architecture controls phase separation and limits domain growth. By systematically varying chain contour length, chain rigidity, and network topology, we uncover that finite domains emerge when intrinsic chain- or network-level length scales, such as persistence length or entanglement length, impose local constraints on coarsening. Further, the size of these finite domains is highly correlated with these microscopic network properties, but depends surprisingly little on bulk elasticity. Taken together, our findings establish a molecular basis for understanding droplet formation in polymer networks, and provide guiding principles for engineering materials and interpreting condensate behavior in cells.

cond-mat.soft

Phase separation with non-local interactions

Phase separation in complex systems is a ubiquitous phenomenon. While simple theories predict coarsening until only macroscopically large phases remain, concrete models often exhibit patterns with finite length scales. To unify such models, we here propose a general field-theoretic model that combines phase separation with non-local interactions. Our analysis reveals that long-range interactions generally suppress coarsening, whereas systems with non-local short-range interactions additionally exhibit a continuous phase transition to patterned phases. Only the latter system allows for the coexistence of homogeneous and patterned phases, which we explain by mapping to the conserved Swift-Hohenberg model. Taken together, our generic model reveals an underlying framework that describes similar phenomena observed in many complex phase-separating systems.

cond-mat.soft

Self-propulsion via non-transitive phase coexistence in chemically active mixtures

Phase separation drives the formation of biomolecular condensates in cells, which comprise many components and sometimes possess multiple phases. The equilibrium physics of phase separation is well understood, but many components in condensates undergo active reactions. We demonstrate that such reactions affect phase separation by altering the chemical potential balance and by introducing an osmotic pressure difference at interfaces. However, the system does not permit a pseudo-pressure balance, and bulk compositions depend on which phases are in contact. Moreover, phase coexistence is no longer transitive, which enables self-propelled phases and more complex dynamics.

cond-mat.soft

Dynamics of phase separation in non-local elastic networks

Phase separation of a liquid mixture embedded within an elastic network is relevant to a wide range of natural and industrial systems, including biomolecular condensates interacting with the cytoskeleton, structural colouring in bird feathers, and gas bubbles forming within soft sediments. Recent experiments in synthetic polymer gels have demonstrated that when the size of phase-separated domains is comparable to the characteristic pore size of the network, a patterned phase with a well-defined length scale may emerge. Theoretical works based on an equilibrium approach have attributed this pattern formation to non-local elastic effects arising from heterogeneity of the underlying network. Here, we extend these ideas by developing a dynamic theory in which phase separation is coupled to non-local elasticity via the framework of large-deformation poroelasticity. We study our model via both linear stability analysis and numerical simulation, identifying the parameter space in which phase separation occurs, and investigating the impact of different elasticity models. We find that although local elasticity can inhibit phase separation and affect domain count, it is unable to completely suppress coarsening. In contrast, non-local elasticity arrests coarsening to form patterned domains with a well-defined length scale that decreases with increasing stiffness. Our modelling framework thus paves the way for quantitative comparisons between simulations and experiments, for example by considering a strain-stiffening network rheology.

cond-mat.soft

Generic multicomponent mixtures are multistable

Liquid mixtures of many interacting components often exhibit numerous coexisting types of droplets. An exciting example is the cytosol of biological cells, where diverse droplets, called condensates, are essential for cellular function. However, how much their formation is constrained by thermodynamics is currently unclear. Linear stability analysis predicts that homogeneous mixtures become more robust to fluctuations as the number of components increases, suggesting that droplets do not form easily in multicomponent mixtures. In contrast, we show through numerical simulations and analytical scaling laws that the number of coexisting phases typically increases with the number of components in equilibrium. The combination of both results suggests that generic multicomponent mixtures can maintain many metastable states with various droplets, generalizing the nucleation-and-growth regime of binary mixtures. Our theory also indicates why cells exhibit much fewer condensates than components and how they could exploit multistability to independently form various condensates.

cond-mat.soft

Condensate Size Control by Net Charge

Biomolecular condensates are complex droplets comprising diverse molecules that interact using various mechanisms. Condensation is often driven by short-ranged attraction, but net charges can also mediate long-ranged repulsion. Using molecular dynamics simulations and an equilibrium field theory, we show that such opposing interactions can suppress coarsening so that many droplets of equal size coexist at equilibrium. This size control depends strongly on the charge asymmetry between constituents, while the strength of the short-ranged attractions has a weak influence. Essentially, droplets expel ions, so they cannot screen electrostatics effectively, implying droplets acquire a net charge and cannot grow indefinitely. Our work reveals how electrostatic effects control droplet size, which is relevant for understanding biomolecular condensates and creating synthetic patterns in chemical engineering.

cond-mat.soft

Beyond Pairwise: Higher-order physical interactions affect phase separation in multi-component liquids

Phase separation, crucial for spatially segregating biomolecules in cells, is well-understood in the simple case of a few components with pairwise interactions. Yet, biological cells challenge the simple picture in at least two ways: First, biomolecules, like proteins and nucleic acids, exhibit complex, higher-order interactions, where a single molecule may interact with multiple others simultaneously. Second, cells comprise a myriad of different components that form various droplets. Such multicomponent phase separation has been studied in the simple case of pairwise interactions, but an analysis of higher-order interactions is lacking. We propose such a theory and study the corresponding phase diagrams numerically. We find that interactions between three components are similar to pairwise interactions, whereas composition-dependent higher-order interactions between two components can oppose phase separation. This surprising result can only be revealed from the equilibrium phase diagrams, implying that the often-used stability analysis of homogeneous states is inadequate to study these systems. We thus show that higher-order interactions could play a crucial role in forming droplets in cells, and their manipulation could offer novel approaches to controlling multicomponent phase separation.

cond-mat.soft

Theory of Elastic Microphase Separation

Elastic microphase separation refers to equilibrium patterns that form by phase separation in elastic gels. Recent experiments revealed a continuous phase transition from the homogeneous phase to a regularly patterned phase, whose period decreased for stiffer systems. We here propose a model that captures these observations. The model combines a continuous field of the elastic component to describe phase separation with nonlocal elasticity theory to capture the gel's microstructure. Analytical approximations unveil that the pattern period is determined by the geometric mean between the elasto-capillary length and a microscopic length scale of the gel. Our theory highlights the importance of nonlocal elasticity in soft matter systems, reveals the mechanism of elastic microphase separation, and will improve the engineering of such systems.

cond-mat.soft