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Yichi Zhang

Publications and source records attributed to Yichi Zhang.

At least 91 records · Page 5Linked to original sources
arXiv2026

Structured and Abstractive Reasoning on Multi-modal Relational Knowledge Images

Understanding and reasoning with abstractive information from the visual modality presents significant challenges for current multi-modal large language models (MLLMs). Among the various forms of abstractive information, Multi-Modal Relational Knowledge (MMRK), which represents abstract relational structures between multi-modal entities using node-edge formats, remains largely under-explored. In particular, STructured and Abstractive Reasoning (STAR) on such data has received little attention from the research community. To bridge the dual gaps in large-scale high-quality data and capability enhancement methodologies, this paper makes the following key contributions: (i). An automatic STAR data engine capable of synthesizing images with MMRK to build multi-modal instruction data with reliable chain-of-thought thinking for various STAR tasks and (ii). A comprehsive two-stage capability enhancement training framework, accompanied by a suite of evaluation protocols tailored to different STAR tasks. Based upon these contributions, we introduce STAR-64K, a dataset comprising 64K high-quality multi-modal instruction samples, and conduct experiments across 5 open-source MLLMs. Experimental results show that our two-stage enhancement framework enables smaller 3B/7B models to significantly outperform GPT-4o in STAR. Additionally, we provide in-depth analysis regarding the effectiveness of various designs, data transferability, and scalability.

cs.CV↗
arXiv2026

SafetyALFRED: Evaluating Safety-Conscious Planning of Multimodal Large Language Models

Multimodal Large Language Models are increasingly adopted as autonomous agents in interactive environments, yet their ability to proactively address safety hazards remains insufficient. We introduce SafetyALFRED, built upon the embodied agent benchmark ALFRED, augmented with six categories of real-world kitchen hazards. While existing safety evaluations focus on hazard recognition through disembodied question answering (QA) settings, we evaluate eleven state-of-the-art models from the Qwen, Gemma, and Gemini families on not only hazard recognition, but also active risk mitigation through embodied planning. Our experimental results reveal a significant alignment gap: while models can accurately recognize hazards in QA settings, average mitigation success rates for these hazards are low in comparison. Our findings demonstrate that static evaluations through QA are insufficient for physical safety, thus we advocate for a paradigm shift toward benchmarks that prioritize corrective actions in embodied contexts. We open-source our code and dataset under https://github.com/sled-group/SafetyALFRED.git

cs.AI↗
arXiv2026

Collaboration of Fusion and Independence: Hypercomplex-driven Robust Multi-Modal Knowledge Graph Completion

Multi-modal knowledge graph completion (MMKGC) aims to discover missing facts in multi-modal knowledge graphs (MMKGs) by leveraging both structural relationships and diverse modality information of entities. Existing MMKGC methods follow two multi-modal paradigms: fusion-based and ensemble-based. Fusion-based methods employ fixed fusion strategies, which inevitably leads to the loss of modality-specific information and a lack of flexibility to adapt to varying modality relevance across contexts. In contrast, ensemble-based methods retain modality independence through dedicated sub-models but struggle to capture the nuanced, context-dependent semantic interplay between modalities. To overcome these dual limitations, we propose a novel MMKGC method M-Hyper, which achieves the coexistence and collaboration of fused and independent modality representations. Our method integrates the strengths of both paradigms, enabling effective cross-modal interactions while maintaining modality-specific information. Inspired by ``quaternion'' algebra, we utilize its four orthogonal bases to represent multiple independent modalities and employ the Hamilton product to efficiently model pair-wise interactions among them. Specifically, we introduce a Fine-grained Entity Representation Factorization (FERF) module and a Robust Relation-aware Modality Fusion (R2MF) module to obtain robust representations for three independent modalities and one fused modality. The resulting four modality representations are then mapped to the four orthogonal bases of a biquaternion (a hypercomplex extension of quaternion) for comprehensive modality interaction. Extensive experiments indicate its state-of-the-art performance, robustness, and computational efficiency.

cs.CL↗
arXiv2026

RLPO: Residual Listwise Preference Optimization for Long-Context Review Ranking

Review ranking is pivotal in e-commerce for prioritizing diagnostic and authentic feedback from the deluge of user-generated content. While large language models have improved semantic assessment, existing ranking paradigms face a persistent trade-off in long-context settings. Pointwise scoring is efficient but often fails to account for list-level interactions, leading to miscalibrated top-$k$ rankings. Listwise approaches can leverage global context, yet they are computationally expensive and become unstable as candidate lists grow. To address this, we propose Residual Listwise Preference Optimization (RLPO), which formulates ranking as listwise representation-level residual correction over a strong pointwise LLM scorer. RLPO first produces calibrated pointwise scores and item representations, then applies a lightweight encoder over the representations to predict listwise score residuals, avoiding full token-level listwise processing. We also introduce a large-scale benchmark for long-context review ranking with human verification. Experiments show RLPO improves NDCG@k over strong pointwise and listwise baselines and remains robust as list length increases.

cs.IR↗
arXiv2026

The Python Simulations of Chemistry Framework: 10 years of an open-source quantum chemistry project

Over the past decade, the Python-based Simulations of Chemistry Framework (PySCF) has developed into a widely used open-source platform for electronic structure theory and quantum chemical method development. This article reviews the major advances since the previous overview in 2020, covering new modules and methodology, infrastructure changes, and performance benchmarks.

physics.chem-ph↗
arXiv2026

Pixel Motion Diffusion is What We Need for Robot Control

We present DAWN (Diffusion is All We Need for robot control), a unified diffusion-based framework for language-conditioned robotic manipulation that bridges high-level motion intent and low-level robot action via structured pixel motion representation. In DAWN, both the high-level and low-level controllers are modeled as diffusion processes, yielding a fully trainable, end-to-end system with interpretable intermediate motion abstractions. DAWN achieves state-of-the-art results on the challenging CALVIN benchmark, demonstrating strong multi-task performance, and further validates its effectiveness on MetaWorld. Despite the substantial domain gap between simulation and reality and limited real-world data, we demonstrate reliable real-world transfer with only minimal finetuning, illustrating the practical viability of diffusion-based motion abstractions for robotic control. Our results show the effectiveness of combining diffusion modeling with motion-centric representations as a strong baseline for scalable and robust robot learning. Project page: https://eronguyen.github.io/DAWN/

cs.RO↗
arXiv2026

HippoCamp: Benchmarking Contextual Agents on Personal Computers

We present HippoCamp, a new benchmark designed to evaluate agents' capabilities on multimodal file management. Unlike existing agent benchmarks that focus on tasks like web interaction, tool use, or software automation in generic settings, HippoCamp evaluates agents in user-centric environments to model individual user profiles and search massive personal files for context-aware reasoning. Our benchmark instantiates device-scale file systems over real-world profiles spanning diverse modalities, comprising 42.4 GB of data across over 2K real-world files. Building upon the raw files, we construct 581 QA pairs to assess agents' capabilities in search, evidence perception, and multi-step reasoning. To facilitate fine-grained analysis, we provide 46.1K densely annotated structured trajectories for step-wise failure diagnosis. We evaluate a wide range of state-of-the-art multimodal large language models (MLLMs) and agentic methods on HippoCamp. Our comprehensive experiments reveal a significant performance gap: even the most advanced commercial models achieve only 48.3% accuracy in user profiling, struggling particularly with long-horizon retrieval and cross-modal reasoning within dense personal file systems. Furthermore, our step-wise failure diagnosis identifies multimodal perception and evidence grounding as the primary bottlenecks. Ultimately, HippoCamp exposes the critical limitations of current agents in realistic, user-centric environments and provides a robust foundation for developing next-generation personal AI assistants.

cs.AI↗
arXiv2026

An integrated photonic millimeter-wave receiver with sub-ambient noise

Decades of progress in radiofrequency (RF) transistors and receiver frontends have profoundly impacted wireless communications, remote sensing, navigation, and instrumentation. Growing demands for data throughput in 6G networks, timing precision in positioning systems, and resolution in atmospheric sensing and automotive radar have pushed receiver frontends into the millimeter-wave (mmW) and sub-mmW/THz regimes. At these frequencies, however, the noise performance of field-effect transistors (FETs) degrades rapidly due to parasitic effects, limited carrier mobility, hot electrons, and shot noise. Parametric transducers that couple electromagnetic signals to optical fields offer quantum-limited sensitivity at room temperature. Electro-optic materials enable receivers that convert RF signals into optical phase shifts. While early demonstrations used resonant devices and recent efforts have focused on cryogenic microwave-to-optical quantum transduction, room-temperature electro-optic receivers have yet to achieve noise figures comparable to their electronic counterparts. Here we demonstrate a room-temperature integrated cavity electro-optic mmW receiver on a lithium tantalate (LiTaO3) photonic integrated circuit with 2.5% on-chip photon-number transduction efficiency, achieving 250 K noise temperature at 59.33 GHz--matching state-of-the-art LNAs. We report the first direct resolution of thermal noise in cavity electro-optic transduction, showing the system is fundamentally limited by thermal photon occupation (~100) in the mmW cavity. Our work establishes integrated photonics as a path to surpass electronic LNAs while offering exceptional resilience to strong electromagnetic inputs and immunity to EMI, establishing cavity electro-optics as a low-noise, chip-scale, EMI-resilient receiver frontend for mmW applications and scalable analog processing in the optical domain.

physics.optics↗
arXiv2026

A Conditional Generative Framework for Synthetic Data Augmentation in Segmenting Thin and Elongated Structures in Biological Images

Thin and elongated filamentous structures, such as microtubules and actin filaments, often play important roles in biological systems. Segmenting these filaments in biological images is a fundamental step for quantitative analysis. Recent advances in deep learning have significantly improved the performance of filament segmentation. However, there is a big challenge in acquiring high quality pixel-level annotated dataset for filamentous structures, as the dense distribution and geometric properties of filaments making manual annotation extremely laborious and time-consuming. To address the data shortage problem, we propose a conditional generative framework based on the Pix2Pix architecture to generate realistic filaments in microscopy images from binary masks. We also propose a filament-aware structural loss to improve the structure similarity when generating synthetic images. Our experiments have demonstrated the effectiveness of our approach and outperformed existing model trained without synthetic data.

cs.CV↗
arXiv2026

FocusVLA: Focused Visual Utilization for Vision-Language-Action Models

Vision-Language-Action (VLA) models improve action generation by conditioning policies on rich vision-language information. However, current auto-regressive policies are constrained by three bottlenecks: (1) architectural bias drives models to overlook visual details, (2) an excessive number of visual tokens makes attention difficult to focus on the correct regions, and (3) task-irrelevant visual information introduces substantial noise - together severely impairing the quality of action. In this paper, we investigate how to effectively utilize different visual representations for action generation. To this end, we first empirically validate the above issues and show that VLA performance is primarily limited by how visual information is utilized, rather than by the quality of visual representations. Based on these insights, we introduce FocusVLA, a novel paradigm that directs the model's attention to task-relevant visual regions to effectively bridge vision to action. Specifically, we first propose Modality Cascaded Attention to eliminate shortcut pathways, thereby compelling VLA models to rely on task-relevant visual details for action generation. Furthermore, we propose Focus Attention, which dynamically selects task-relevant visual patches to control information quantity while explicitly modulating their influence to suppress task-irrelevant noise. Extensive experiments on both simulated and real-world robotic benchmarks demonstrate that FocusVLA not only effectively leverages visual details to perform dexterous manipulations, but also substantially improves performance and accelerates convergence across a variety of tasks.

cs.RO↗
arXiv2026

Stochastically Dominant Peer Prediction

Eliciting reliable human feedback is essential for many machine learning tasks, such as learning from noisy labels and aligning AI systems with human preferences. Peer prediction mechanisms incentivize truthful reporting without ground truth verification by scoring agents based on correlations with peers. Traditional mechanisms, which ensure that truth-telling maximizes the expected scores in equilibrium, can elicit honest information while assuming agents' utilities are linear functions of their scores. However, in practice, non-linear payment rules are usually preferred, or agents' utilities are inherently non-linear. We propose stochastically dominant truthfulness (SD-truthfulness) as a stronger guarantee: the score distribution of truth-telling stochastically dominates all other strategies, incentivizing truthful reporting for a wide range of monotone utility functions. Our first observation is that no existing peer prediction mechanism naturally satisfies this criterion without strong assumptions. A simple solution -- rounding scores into binary lotteries -- can enforce SD-truthfulness, but often degrades sensitivity, a key property related to fairness and statistical efficiency. We demonstrate how a more careful application of rounding can better preserve sensitivity. Furthermore, we introduce a new enforced agreement (EA) mechanism that is theoretically guaranteed to be SD-truthful in binary-signal settings under mild assumptions, and empirically achieves the highest sensitivity among all known SD-truthful mechanisms.

cs.GT↗
arXiv2026

From emission to absorption: the FAST observation of the OH 18-cm lines from the Comet C2025/A6

We observed comet C/2025 A6 with the Five-hundred-meter Aperture Spherical radio Telescope (FAST) equipped with the ultra-wideband receiver from 2025 October 23 to November 8, and it was the first detection for this comet with FAST.Through trapezoidal fitting of the OH line profiles, we derived the expansion velocities of the water which showed an increase from 1.5$\pm$0.3 km s$^{-1}$ at the heliocentric distance of 0.65 AU to 3.0$\pm$0.9 km s$^{-1}$ at 0.54 AU. Based on these results, we estimated the OH production rates of C/2025 A6 for October 23, October 26, November 4 and November 5 which were (1.0$\pm$0.1)$\times$10$^{29}$, (1.2$\pm$0.1)$\times$10$^{29}$, (1.4$\pm$0.3)$\times$10$^{29}$, and (1.5$\pm$0.4)$\times$10$^{29}$ s$^{-1}$ respectively. The results show a significant upward trend.

astro-ph.EP↗
arXiv2026

Embodied Science: Closing the Discovery Loop with Agentic Embodied AI

Artificial intelligence has demonstrated remarkable capability in predicting scientific properties, yet scientific discovery remains an inherently physical, long-horizon pursuit governed by experimental cycles. Most current computational approaches are misaligned with this reality, framing discovery as isolated, task-specific predictions rather than continuous interaction with the physical world. Here, we argue for embodied science, a paradigm that reframes scientific discovery as a closed loop tightly coupling agentic reasoning with physical execution. We propose a unified Perception-Language-Action-Discovery (PLAD) framework, wherein embodied agents perceive experimental environments, reason over scientific knowledge, execute physical interventions, and internalize outcomes to drive subsequent exploration. By grounding computational reasoning in robust physical feedback, this approach bridges the gap between digital prediction and empirical validation, offering a roadmap for autonomous discovery systems in the life and chemical sciences.

cs.AI↗
arXiv2026

Understanding by Reconstruction: Reversing the Software Development Process for LLM Pretraining

While Large Language Models (LLMs) have achieved remarkable success in code generation, they often struggle with the deep, long-horizon reasoning required for complex software engineering. We attribute this limitation to the nature of standard pre-training data: static software repositories represent only the terminal state of an intricate intellectual process, abstracting away the intermediate planning, debugging, and iterative refinement. To bridge this gap, we propose a novel paradigm: understanding via reconstruction. We hypothesize that reverse-engineering the latent agentic trajectories -- the planning, reasoning, and debugging steps -- behind static repositories provides a far richer supervision signal than raw code alone. To operationalize this, we introduce a framework that synthesizes these trajectories using a multi-agent simulation. This process is grounded in the structural realities of the source repositories (e.g., dependency graphs and file hierarchies) to ensure fidelity. Furthermore, to guarantee the logical rigor of the synthetic data, we employ a search-based optimization technique that iteratively refines the Chain-of-Thought (CoT) reasoning to maximize the likelihood of the ground-truth code. Empirical results demonstrate that continuous pre-training on these reconstructed trajectories significantly enhances Llama-3-8B's performance across diverse benchmarks, including long-context understanding, coding proficiency, and agentic capabilities.

cs.SE↗
arXiv2026

Unveiling the Basin-Like Loss Landscape in Large Language Models

We discover the emergence of \textit{basins} in the loss landscape of large language models. As model scale increases, LLMs become progressively more resilient to random perturbations in the parameter space, giving rise to expansive stability regions where models exhibit nearly identical performance, but outside of which their capabilities collapse. We observe that pre-training creates a \textit{basic capability} basin, and subsequent alignment fine-tuning forms \textit{specific capability} basins (e.g., safety, math, coding). Thus, we argue that benign fine-tuning confined to the basin should preserve prior capabilities. Besides, we also analyze the loss landscape for worst-case directions, which is consistently sharp and detrimental. We find that adversarial fine-tuning moves along the nearly worst-case directions, thus rapidly degrading model capabilities. Finally, we provide a theoretical analysis demonstrating that the basin size bounds the performance degradation of any fine-tuning, including the adversarial ones, while also guaranteeing the model robustness w.r.t. input perturbations, suggesting the benefit of enlarging basins.

cs.LG↗
arXiv2026

SegAnyPET: Universal Promptable Segmentation from Positron Emission Tomography Images

Positron Emission Tomography (PET) is a powerful molecular imaging tool that plays a crucial role in modern medical diagnostics by visualizing radio-tracer distribution to reveal physiological processes. Accurate organ segmentation from PET images is essential for comprehensive multi-systemic analysis of interactions between different organs and pathologies. Existing segmentation methods are limited by insufficient annotation data and varying levels of annotation, resulting in weak generalization ability and difficulty in clinical application. Recent developments in segmentation foundation models have shown superior versatility across diverse segmentation tasks. Despite the efforts of medical adaptations, these works primarily focus on structural medical images with detailed physiological structural information and exhibit limited generalization performance on molecular PET imaging. In this paper, we collect and construct PETS-5k, the largest PET segmentation dataset to date, comprising 5,731 three-dimensional whole-body PET images and encompassing over 1.3M 2D images. Based on the established dataset, we develop SegAnyPET, a modality-specific 3D foundation model for universal promptable segmentation from PET images. To issue the challenge of discrepant annotation quality, we adopt a cross prompting confident learning (CPCL) strategy with an uncertainty-guided self-rectification process to robustly learn segmentation from high-quality labeled data and low-quality noisy labeled data for promptable segmentation. Experimental results demonstrate that SegAnyPET can segment seen and unseen target organs using only one or a few prompt points, outperforming state-of-the-art foundation models and task-specific fully supervised models with higher accuracy and strong generalization ability for universal segmentation.

cs.CV↗
arXiv2026

Developing Foundation Models for Universal Segmentation from 3D Whole-Body Positron Emission Tomography

Positron emission tomography (PET) is a key nuclear medicine imaging modality that visualizes radiotracer distributions to quantify in vivo physiological and metabolic processes, playing an irreplaceable role in disease management. Despite its clinical importance, the development of deep learning models for quantitative PET image analysis remains severely limited, driven by both the inherent segmentation challenge from PET's paucity of anatomical contrast and the high costs of data acquisition and annotation. To bridge this gap, we develop generalist foundational models for universal segmentation from 3D whole-body PET imaging. We first build the largest and most comprehensive PET dataset to date, comprising 11041 3D whole-body PET scans with 59831 segmentation masks for model development. Based on this dataset, we present SegAnyPET, an innovative foundational model with general-purpose applicability to diverse segmentation tasks. Built on a 3D architecture with a prompt engineering strategy for mask generation, SegAnyPET enables universal and scalable organ and lesion segmentation, supports efficient human correction with minimal effort, and enables a clinical human-in-the-loop workflow. Extensive evaluations on multi-center, multi-tracer, multi-disease datasets demonstrate that SegAnyPET achieves strong zero-shot performance across a wide range of segmentation tasks, highlighting its potential to advance the clinical applications of molecular imaging.

cs.CV↗
arXiv2026

PET-F2I: A Comprehensive Benchmark and Parameter-Efficient Fine-Tuning of LLMs for PET/CT Report Impression Generation

PET/CT imaging is pivotal in oncology and nuclear medicine, yet summarizing complex findings into precise diagnostic impressions is labor-intensive. While LLMs have shown promise in medical text generation, their capability in the highly specialized domain of PET/CT remains underexplored. We introduce PET-F2I-41K (PET Findings-to-Impression Benchmark), a large-scale benchmark for PET/CT impression generation using LLMs, constructed from over 41k real-world reports. Using PET-F2I-41K, we conduct a comprehensive evaluation of 27 models across proprietary frontier LLMs, open-source generalist models, and medical-domain LLMs, and we develop a domain-adapted 7B model (PET-F2I-7B) fine-tuned from Qwen2.5-7B-Instruct via LoRA. Beyond standard NLG metrics (e.g., BLEU-4, ROUGE-L, BERTScore), we propose three clinically grounded metrics - Entity Coverage Rate (ECR), Uncovered Entity Rate (UER), and Factual Consistency Rate (FCR) - to assess diagnostic completeness and factual reliability. Experiments reveal that neither frontier nor medical-domain LLMs perform adequately in zero-shot settings. In contrast, PET-F2I-7B achieves substantial gains (e.g., 0.708 BLEU-4) and a 3.0x improvement in entity coverage over the strongest baseline, while offering advantages in cost, latency, and privacy. Beyond this modeling contribution, PET-F2I-41K establishes a standardized evaluation framework to accelerate the development of reliable and clinically deployable reporting systems for PET/CT.

cs.CV↗