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Yiming Gao

Publications and source records attributed to Yiming Gao.

At least 19 recordsLinked to original sources

Gaussian Difference Dynamics: Breaking the $2^{n/2}$ Barrier for the Shortest Vector Problem and Discrete Gaussian Sampling

We give classical randomized algorithms in a word RAM model that break the $2^{n/2}$ barrier for both discrete Gaussian sampling (DGS) and the Shortest Vector Problem (SVP). For every fixed $α>1$, shifted DGS on arbitrary lattices at width $σ\geαη_{1/2}(L)$ takes $$ (3/2)^{n/2+o(n)}\text{ time} \qquad\text{and}\qquad (4/3)^{n/2+o(n)}\text{ space}. $$ These bounds match the Becker--Ducas--Gama--Laarhoven (BDGL) heuristic sieving exponents. At widths at least $3η_{1/2}(L)/2$, the same total cost suffices for an entire batch of $\lfloor(4/3)^{n/2}\rfloor$ samples jointly close to independent target Gaussians. For SVP on arbitrary lattices, our algorithm returns a shortest nonzero vector with high probability in $$ 2^{0.4130n+o(n)}\text{ time} \qquad\text{and}\qquad 2^{0.3138n+o(n)}\text{ space}. $$ As a corollary, we obtain centered DGS at every width with the same exponents, answering a question of Stephens-Davidowitz (SODA 2016). We introduce Gaussian difference dynamics (GDD), a framework for tracking expected counts and pairwise clustering of vectors through repeated differencing. A closed recursion for the first two counting moments controls these quantities relative to a Gaussian reference, without requiring independence within intermediate lists. Accurate moment bounds let us extract a Gaussian sample by weighted selection, while the weaker bounds needed to establish a shortest vector representation allow us to retain more differences. We perform these transitions on thin spherical shells, where the Gaussian rejection weights can be renormalized at subexponential cost. For batch sampling, we combine this geometry with the double rejection technique of Doulgerakis and Laarhoven to control the joint distribution of outputs while reusing vectors.

cs.DS↗

$\ell_{\infty}$ norm SVP in $\widetilde{O}(3^n)$

We give a classical randomized algorithm for the Shortest Vector Problem in the infinity norm in $\widetilde O(3^n)$ time and space, improving the previous bound of $2^{2.443n+o(n)}$. We adapt Gaussian difference dynamics to the infinity norm by repeatedly taking differences of vectors from two lists, producing lists in successively smaller cubes. The key is to restrict the midpoint of each pair to a fixed inner cube, so that every allowed difference has the same region of possible midpoints. Using random lattice translates, this rule preserves equal expected counts at each point of the smaller cube. We analyze the dependencies created by repeated differencing through the counting moments of Gaussian difference dynamics, together with a weighted packing bound for cubes. Finally, two searches based on coordinate comparisons generate the intermediate lists and recover a shortest lattice vector within the claimed time bound.

cs.DS↗

Provable Subexponential Algorithms for NIST Third-Round Lattice Families

We give provable classical subexponential algorithms for secret recovery in growing parameter families associated with NIST third-round lattice candidates. For the Kyber/ML-KEM, FrodoKEM, SABER, NTRU LPRime, and Dilithium/ML-DSA families studied here, polynomial moduli and polylogarithmic coefficient scales yield recovery of the short secret component in expected time and space $2^{(1/2+o(1))n/\ln\ln n}$. For noisy or rounded linear relations, we exploit an exact gap in the squared Euclidean norm of a comparison vector defined by each coordinate guess. One Gaussian list suffices to identify every secret coordinate by binary search, without enumerating the others. We establish the required sampling guarantees through new geometric bounds for structured public operators over prime and power of two moduli. The construction builds on the Wagner-style Gaussian sampling framework of Ducas, Engelberts, and Loyer (CRYPTO 2025) and the low-error decision-LWE algorithm of Han, Gao, and Hu (2026). For quotient relations of NTRU type, we develop an affine slice search: fixing coordinates restricts candidate pairs to slices of the public lattice, and their estimated Gaussian masses guide the choice of each next coordinate. In the stated modulus window, Falcon's key generation quality condition supplies the required mass bound. The algorithm then recovers an equivalent signing key with high probability in time and space $2^{O(n/\ln\ln n)}$. The same search recovers the short key core for cyclic NTRU-HPS/HRSS. Together, these results give subexponential algorithms for problem families associated with all seven NIST third-round lattice candidates. Despite the subexponential complexity, our results do not establish a reduction in the concrete security of the currently specified parameter sets.

cs.CR↗

Senses Wide Shut: A Representation-Action Gap in Omnimodal LLMs

When an omnimodal large language model accepts a question whose textual premise contradicts what it actually sees or hears, does the failure lie in perception or in action? Recent omnimodal models are positioned as perception-grounded agents that jointly process video, audio, and text, yet a basic form of grounding remains untested: catching a textual claim that conflicts with the model's own sensory input. We introduce IMAVB, a curated 500-clip benchmark of long-form movies with a 2x2 design crossing target modality (vision, audio) and premise condition (standard, misleading), which lets us measure conflict detection separately from ordinary multimodal comprehension. Across eight open-source omnimodal LLMs and Gemini 3.1 Pro, we document a Representation-Action Gap: hidden states reliably encode premise-perception mismatches even when the same models almost never reject the false claim in their outputs. Behaviorally, models fall into two failure modes: under-rejection, in which they answer misleading questions as if the false premise were true; and over-rejection, in which they reject more often but also reject standard questions, sacrificing ordinary comprehension accuracy. The gap is modality-asymmetric (audio grounding underperforms vision) and prompt-resistant across seven variants. As an initial diagnostic intervention, a probe-guided logit adjustment (PGLA) re-injects the encoded mismatch signal into decoding and consistently improves rejection behavior. Together, these results suggest the bottleneck for omnimodal grounding lies in translation, not perception.

cs.AI↗

TACTIC: Temporal and Context-Aware LLM Tactical Planning for Roadside LiDAR Attacks

Physical LiDAR attacks are often evaluated using fixed primitives and manually selected parameters, despite their strong dependence on surrounding traffic. We present TACTIC, a scene-aware framework that uses a multimodal large language model (MLLM) to coordinate state-adaptive roadside LiDAR attacks. Under a gray-box threat model, TACTIC relies only on an attacker-operated roadside perception stack, without accessing the victim LiDAR's native point clouds or internal processing. Local perception provides metric vehicle states, while the MLLM combines these measurements with roadside imagery to infer relational traffic context and construct a semantic scene graph. Based on this representation, TACTIC selects and configures two complementary primitives: \emph{push-away}, which shifts the perceived range of a lead vehicle, and \emph{phantom-obstacle braking}, which triggers emergency braking through obstacle injection. Measured traffic states and empirically calibrated constraints ground the generated tactics in physically feasible operating regions. To accommodate MLLM latency, TACTIC overlaps reasoning and execution asynchronously while high-rate local perception detects scene changes and triggers replanning. Across 280 randomized CARLA trials, the full policy achieves a 100% collision rate, compared with 35% for a fixed rule, 60% for random selection, and 75% for a restricted LLM using mode selection with default parameters. Joint physical-and-image input achieves 100% success, versus 65% with physical measurements alone and 75% with imagery alone, while asynchronous $Δ$ refresh reduces scene-mutation response from 7.4 s to 2.0 s. These results show that scene-dependent tactical planning can expose context-sensitive LiDAR failure modes that fixed attack policies may miss.

cs.RO↗

Faster SVP in Polynomial Space

Kannan's algorithm, as analyzed by Hanrot and Stehlé in 2007, solves the exact Euclidean shortest vector problem in polynomial space and $n^{\frac{n}{2e}+o(n)}$ time. In the classical setting with polynomial space, we obtain the first improvement on this bound via a randomized algorithm that runs in $n^{\frac{n}{4e}+o(n)}$ time. The main idea is to represent a fixed shortest vector in many ways as a difference of samples, thereby enabling the low-space collision search of Lyu and Zhu (SODA 2023) to replace exhaustive enumeration in the original analysis.

cs.DS↗

HypoEvolve: Genetic Algorithms Enable Multi-Agent LLMs to Discover Scientific Hypotheses

Scientific agents contribute to hypothesis discovery by synthesizing evidence, assessing proposals, and developing new explanations. Recent systems combine scientific agents with evolutionary search through critique, comparison, and revision. However, how different forms of agent collaboration affect hypothesis quality remains an open question. Answering this question requires separating the effects of agents' scientific capabilities from those of their collaboration. A framework must therefore preserve agents' scientific roles and support rules for combining, revising, and retaining hypotheses. Building on this view, we introduce HypoEvolve, which makes collaboration explicit through successive updates to a hypothesis population. Specifically, we propose a generational genetic algorithm to coordinate specialized large language model (LLM) agents that integrate mechanistic arguments, reconsider assumptions, and assess evidence and testability. Each generation specifies how scientific judgments and new proposals reshape the population, making collaboration effects on hypothesis quality directly testable. Moreover, we design our evaluation around scientifically meaningful hypotheses that explain how a proposed intervention could work. Drug repurposing links these explanations to target-level biological claims assessed against external evidence. Specifically, we adapt DepMap and Open Targets into complementary external measures grounded in experimental, genetic, and clinical evidence. Across 34 cancer types, HypoEvolve achieves the highest scores against six baselines on both measures. DepMap selectivity reaches 0.171, versus 0.115 for the strongest baseline. Gains over single-pass generation also generalize to held-out cancer types. HypoEvolve advances a vision of autonomous science in which AI research teams achieve a capacity for discovery beyond that of individual models.

cs.CL↗

PertReason: A Knowledge-Grounded Benchmark and Framework for Cell-State-Conditioned Mechanistic Reasoning of Perturbation Effects

Evaluating machine learning in scientific domains requires separating correct predictions from correct reasons under realistic distribution shifts. We introduce PertReason, a knowledge-grounded benchmark and framework suite for cell-state--conditioned reasoning about perturbation effects. At its core, PertReasonQA is a benchmark that tests whether models can generate mechanistically faithful explanations while remaining robust to complex shifts, such as new cells and unseen perturbations. PertReasonQA combines single-cell genetic and chemical perturbation data across multiple cellular contexts with knowledge graphs, and dynamically conditions pathways on cell-specific basal states to avoid generic memorization. Evaluations on state-of-the-art models reveal systematic gaps between predictive accuracy and mechanistic reasoning. Specifically, these models exhibit failure modes largely invisible to standard benchmarks, such as deriving correct answers through flawed logic, ignoring cellular context, and generating directionally inconsistent mechanisms. As a reference probe of the benchmark, we present PertReasonLM, a large language model trained to align outcome predictions with context-specific mechanistic reasoning. Our model targets the identified failure modes by grounding rationales in context-specific pathways and tightening agreement between outcomes and mechanisms. Together, we provide a diagnostic framework for exposing and mitigating failures in faithful reasoning in data-rich scientific systems.

cs.LG↗

DiStash: A Disaggregated Multi-Stash Transactional Key-Value Store

A stash is a storage medium such as Dynamic Random Access Memory (DRAM), Solid State Disk (SSD), Hard Disk Drive (HDD), or Non-Volatile Memory (NVM). This paper presents a disaggregated transactional key-value (KV) store, DiStash, that governs KVs cross pools of stash types. It enables an application to use a single transaction to read and write different copies of one or more key-value pair across the different pools of stashes. It simplifies the application logic by (a) preventing undesirable race conditions that may cause copies of data across different stash pools to reflect different values and/or (b) failures that may result in loss of key-value pairs. A configuration of DiStash may use a pool of stashes as either ephemeral or durable storage. The application dictates whether the content of its participating stashes are inclusive (replicated) or exclusive (tiered). We implement a DiStash by extending FoundationDB. We quantify the tradeoffs with its design decisions using microbenchmarks and eBay's production workload. We open source our implementation at https://github.com/ebay-USC/DiStash.

cs.DB↗

L-PCN: A Point Cloud Accelerator Exploiting Spatial Locality through Octree-based Islandization

Existing Point Cloud Networks (PCNs) have proven to achieve great success in many point cloud tasks such as object part segmentation, shape classification, and so on. The most popular point-based PCNs are usually composed of two sequential steps: Data Structuring (DS) and Feature Computation (FC). In this paper, we first describe an important characteristic of the PCN-specific DS step that has not been addressed in existing PCN accelerators: the spatial locality resulting from overlapping points of the gathered point subsets. Using algorithm-hardware co-design, L-PCN (Locality-aware PCN) proposes two novel techniques to exploit this characteristic to reduce the large amount of repetitive operations in the overall PCN. The first of which is a point cloud partitioning technique, Octree-based Islandization. Using Octree-based adjacency gathering, a point cloud is partitioned into islands in L-PCN, where the point subsets inside the same island exhibit a strong spatial correlation. After partitioning, L-PCN performs the rest of PCN steps at the granularity of islands. The second method of L-PCN is scheduling the intra-island computation with a Hub-based Scheduling to exploit the intra-island data reuse by dynamically caching, updating, and reusing the repeated data. The two methods are implemented in an Islandization Unit, which can be seamlessly integrated into standard PCN workflow. Our evaluation shows that based on our methods for exploiting spatial locality, L-PCN achieves a theoretical reduction in feature fetching ranging from 55.2% to 93.8% and in feature computation ranging from 45.4% to 80.6% during the PCN process. For experimentation, prototype L-PCN accelerators are implemented on the Intel Arria 10 GX FPGA. Experimental results prove that with the Islandization Unit as a plug-in, state-of-the-art PCN accelerators can achieve an additional speedup ranging from 1.2x to 3.2x.

cs.AR↗

Subset Balancing and Generalized Subset Sum via Lattices

We study the Subset Balancing problem: given $x \in \mathbb{Z}^n$ and a coefficient set $C \subseteq \mathbb{Z}$, find a nonzero vector $c \in C^n$ such that $c\cdot x = 0$. The standard meet-in-the-middle algorithm runs in time $\tilde{O}(|C|^{n/2})$, and recent improvements (SODA 2022, Chen, Jin, Randolph, and Servedio; STOC 2026, Randolph and Węgrzycki) beyond this barrier apply mainly when $d$ is constant. We give a reduction from Subset Balancing with $C = \{-d, \dots, d\}$ to a single instance of SVP$_{\infty}$ in dimension $n+1$. Instantiating this reduction with the best known $\ell_\infty$-SVP algorithms yields a deterministic $\tilde{O}((6\sqrt{2πe})^n)$-time algorithm and a randomized $\tilde{O}(2^{2.443n})$-time algorithm. The exponent depends only on $n$, improving on meet-in-the-middle for all $d\ge 15$. For sufficiently large $d$ we also obtain a polynomial-time algorithm. The reduction extends from the box constraint $[-d,d]^n$ to any centrally symmetric convex body $K\subseteq\mathbb{R}^n$, giving deterministic time $\tilde{O}(2^{c_K n})$ for a constant $c_K$ depending only on the shape of $K$. We further study the Generalized Subset Sum problem of finding $c \in C^n$ such that $c \cdot x = τ$. For $C = \{-d, \dots, d\}$ or $C = \{-d,\dots,d\}\setminus\{0\}$, we reduce the worst-case problem to CVP$_{\infty}$ in dimension $n+1$. We observe that distances in our lattice take only integer values, so an approximate CVP$_{\infty}$ oracle still suffices, yielding a deterministic worst-case algorithm running in time $2^{O(n\log\log d)}$. In the average-case setting, we demonstrate that for both coefficient sets the embedded CVP$_{\infty}$ instance satisfies a bounded-distance promise with high probability, removing the $\log\log d$ factor altogether and obtaining a deterministic algorithm running in time $\tilde{O}((18\sqrt{2πe})^n)$.

cs.DS↗

UI-Voyager: A Self-Evolving GUI Agent Learning via Failed Experience

Autonomous mobile GUI agents have attracted increasing attention along with the advancement of Multimodal Large Language Models (MLLMs). However, existing methods still suffer from inefficient learning from failed trajectories and ambiguous credit assignment under sparse rewards for long-horizon GUI tasks. To that end, we propose UI-Voyager, a novel two-stage self-evolving mobile GUI agent. In the first stage, we employ Rejection Fine-Tuning (RFT), which enables the continuous co-evolution of data and models in a fully autonomous loop. The second stage introduces Group Relative Self-Distillation (GRSD), which identifies critical fork points in group rollouts and constructs dense step-level supervision from successful trajectories to correct failed ones. Extensive experiments on AndroidWorld show that our 4B model achieves an 81.0% Pass@1 success rate, outperforming numerous recent baselines and exceeding human-level performance. Ablation and case studies further verify the effectiveness of GRSD. Our method represents a significant leap toward efficient, self-evolving, and high-performance mobile GUI automation without expensive manual data annotation.

cs.LG↗

Multi-Task Genetic Algorithm with Multi-Granularity Encoding for Protein-Nucleotide Binding Site Prediction

Accurate identification of protein-nucleotide binding sites is fundamental to deciphering molecular mechanisms and accelerating drug discovery. However, current computational methods often struggle with suboptimal performance due to inadequate feature representation and rigid fusion mechanisms, which hinder the effective exploitation of cross-task information synergy. To bridge this gap, we propose MTGA-MGE, a framework that integrates a Multi-Task Genetic Algorithm with Multi-Granularity Encoding to enhance binding site prediction. Specifically, we develop a Multi-Granularity Encoding (MGE) network that synergizes multi-scale convolutions and self-attention mechanisms to distill discriminative signals from high-dimensional, redundant biological data. To overcome the constraints of static fusion, a genetic algorithm is employed to adaptively evolve task-specific fusion strategies, thereby effectively improving model generalization. Furthermore, to catalyze collaborative learning, we introduce an External-Neighborhood Mechanism (ENM) that leverages biological similarities to facilitate targeted information exchange across tasks. Extensive evaluations on fifteen nucleotide datasets demonstrate that MTGA-MGE not only establishes a new state-of-the-art in data-abundant, high-resource scenarios but also maintains a robust competitive edge in rare, low-resource regimes, presenting a highly adaptive scheme for decoding complex protein-ligand interactions in the post-genomic era.

cs.LG↗

scPilot: Large Language Model Reasoning Toward Automated Single-Cell Analysis and Discovery

We present scPilot, the first systematic framework to practice omics-native reasoning: a large language model (LLM) converses in natural language while directly inspecting single-cell RNA-seq data and on-demand bioinformatics tools. scPilot converts core single-cell analyses, i.e., cell-type annotation, developmental-trajectory reconstruction, and transcription-factor targeting, into step-by-step reasoning problems that the model must solve, justify, and, when needed, revise with new evidence. To measure progress, we release scBench, a suite of 9 expertly curated datasets and graders that faithfully evaluate the omics-native reasoning capability of scPilot w.r.t various LLMs. Experiments with o1 show that iterative omics-native reasoning lifts average accuracy by 11% for cell-type annotation and Gemini-2.5-Pro cuts trajectory graph-edit distance by 30% versus one-shot prompting, while generating transparent reasoning traces explain marker gene ambiguity and regulatory logic. By grounding LLMs in raw omics data, scPilot enables auditable, interpretable, and diagnostically informative single-cell analyses. Code, data, and package are available at https://github.com/maitrix-org/scPilot

cs.AI↗

CellMaster: Collaborative Cell Type Annotation in Single-Cell Analysis

Single-cell RNA-seq (scRNA-seq) enables atlas-scale profiling of complex tissues, revealing rare lineages and transient states. Yet, assigning biologically valid cell identities remains a bottleneck because markers are tissue- and state-dependent, and novel states lack references. We present CellMaster, an AI agent that mimics expert practice for zero-shot cell-type annotation. Unlike existing automated tools, CellMaster leverages LLM-encoded knowledge (e.g., GPT-4o) to perform on-the-fly annotation with interpretable rationales, without pre-training or fixed marker databases. Across 9 datasets spanning 8 tissues, CellMaster improved accuracy by 7.1% over best-performing baselines (including CellTypist and scTab) in automatic mode. With human-in-the-loop refinement, this advantage increased to 18.6%, with a 22.1% gain on subtype populations. The system demonstrates particular strength in rare and novel cell states where baselines often fail. Source code and the web application are available at \href{https://github.com/AnonymousGym/CellMaster}{https://github.com/AnonymousGym/CellMaster}.

q-bio.GN↗

Compendia: Automated Visual Storytelling Generation from Online Article Collection

In the digital age, readers value quantitative journalism that is clear, concise, analytical, and human-centred. To understand complex topics, they often piece together scattered facts from multiple articles. Visual storytelling can transform fragmented information into clear, engaging narratives, yet its use with unstructured online articles remains largely unexplored. To fill this gap, we present Compendia, an automated system that analyzes online articles in response to a user's query and generates a coherent data story tailored to the user's informational needs. Compendia addresses key challenges of storytelling from unstructured text through two modules covering: Online Article Retrieval, which gathers relevant articles; Data Fact Extraction, which identifies, validates, and refines quantitative facts; Fact Organization, which clusters and merges related facts into coherent thematic groups; and Visual Storytelling, which transforms the organized facts into narratives with visualizations in an interactive scrollytelling interface. We evaluated Compendia through a quantitative analysis, confirming the accuracy in fact extraction and organization, and through two user studies with 16 participants, demonstrating its usability, effectiveness, and ability to produce engaging visual stories for open-ended queries.

cs.HC↗

ProAct: Agentic Lookahead in Interactive Environments

Existing Large Language Model (LLM) agents struggle in interactive environments requiring long-horizon planning, primarily due to compounding errors when simulating future states. To address this, we propose ProAct, a framework that enables agents to internalize accurate lookahead reasoning through a two-stage training paradigm. First, we introduce Grounded LookAhead Distillation (GLAD), where the agent undergoes supervised fine-tuning on trajectories derived from environment-based search. By compressing complex search trees into concise, causal reasoning chains, the agent learns the logic of foresight without the computational overhead of inference-time search. Second, to further refine decision accuracy, we propose the Monte-Carlo Critic (MC-Critic), a plug-and-play auxiliary value estimator designed to enhance policy-gradient algorithms like PPO and GRPO. By leveraging lightweight environment rollouts to calibrate value estimates, MC-Critic provides a low-variance signal that facilitates stable policy optimization without relying on expensive model-based value approximation. Experiments on both stochastic (e.g., 2048) and deterministic (e.g., Sokoban) environments demonstrate that ProAct significantly improves planning accuracy. Notably, a 4B parameter model trained with ProAct outperforms all open-source baselines and rivals state-of-the-art closed-source models, while demonstrating robust generalization to unseen environments. The codes and models are available at https://github.com/GreatX3/ProAct

cs.AI↗

Artificial intelligence pioneers the double-strangeness factory

Artificial intelligence (AI) is transforming not only our daily experiences but also the technological development landscape and scientific research. In this study, we pioneered the application of AI in double-strangeness hypernuclear studies. These studies which investigate quantum systems with strangeness via hyperon interactions provide insights into fundamental baryon-baryon interactions and contribute to our understanding of the nuclear force and composition of neutron star cores. Specifically, we report the observation of a double hypernucleus in nuclear emulsion achieved via innovative integration of machine learning techniques. The proposed methodology leverages generative AI and Monte Carlo simulations to produce training datasets combined with object detection AI for effective event identification. Based on the kinematic analysis and charge identification, the observed event was uniquely identified as the production and decay of resulting from Ξ- capture by 14N in the nuclear emulsion. Assuming capture in the atomic 3D state, the binding energy of the two Λ hyperons in 13BΛΛ, BΛΛ, was determined as 25.57 +- 1.18(stat.) +- 0.07(syst.) MeV. The ΛΛ interaction energy obtained was 2.83 +- 1.18(stat.) +- 0.14(syst.) MeV. This study marks a new era in double-strangeness research.

nucl-ex↗