arXiv subjects

Ying Nian Wu

Publications and source records attributed to Ying Nian Wu.

At least 91 records · Page 5Linked to original sources

arXiv2024

Triple Regression for Camera Agnostic Sim2Real Robot Grasping and Manipulation Tasks

Sim2Real (Simulation to Reality) techniques have gained prominence in robotic manipulation and motion planning due to their ability to enhance success rates by enabling agents to test and evaluate various policies and trajectories. In this paper, we investigate the advantages of integrating Sim2Real into robotic frameworks. We introduce the Triple Regression Sim2Real framework, which constructs a real-time digital twin. This twin serves as a replica of reality to simulate and evaluate multiple plans before their execution in real-world scenarios. Our triple regression approach addresses the reality gap by: (1) mitigating projection errors between real and simulated camera perspectives through the first two regression models, and (2) detecting discrepancies in robot control using the third regression model. Experiments on 6-DoF grasp and manipulation tasks (where the gripper can approach from any direction) highlight the effectiveness of our framework. Remarkably, with only RGB input images, our method achieves state-of-the-art success rates. This research advances efficient robot training methods and sets the stage for rapid advancements in robotics and automation.

cs.RO↗

arXiv2024

Molecule Design by Latent Prompt Transformer

This work explores the challenging problem of molecule design by framing it as a conditional generative modeling task, where target biological properties or desired chemical constraints serve as conditioning variables. We propose the Latent Prompt Transformer (LPT), a novel generative model comprising three components: (1) a latent vector with a learnable prior distribution modeled by a neural transformation of Gaussian white noise; (2) a molecule generation model based on a causal Transformer, which uses the latent vector as a prompt; and (3) a property prediction model that predicts a molecule's target properties and/or constraint values using the latent prompt. LPT can be learned by maximum likelihood estimation on molecule-property pairs. During property optimization, the latent prompt is inferred from target properties and constraints through posterior sampling and then used to guide the autoregressive molecule generation. After initial training on existing molecules and their properties, we adopt an online learning algorithm to progressively shift the model distribution towards regions that support desired target properties. Experiments demonstrate that LPT not only effectively discovers useful molecules across single-objective, multi-objective, and structure-constrained optimization tasks, but also exhibits strong sample efficiency.

cs.LG↗

arXiv2024

DODT: Enhanced Online Decision Transformer Learning through Dreamer's Actor-Critic Trajectory Forecasting

Advancements in reinforcement learning have led to the development of sophisticated models capable of learning complex decision-making tasks. However, efficiently integrating world models with decision transformers remains a challenge. In this paper, we introduce a novel approach that combines the Dreamer algorithm's ability to generate anticipatory trajectories with the adaptive learning strengths of the Online Decision Transformer. Our methodology enables parallel training where Dreamer-produced trajectories enhance the contextual decision-making of the transformer, creating a bidirectional enhancement loop. We empirically demonstrate the efficacy of our approach on a suite of challenging benchmarks, achieving notable improvements in sample efficiency and reward maximization over existing methods. Our results indicate that the proposed integrated framework not only accelerates learning but also showcases robustness in diverse and dynamic scenarios, marking a significant step forward in model-based reinforcement learning.

cs.LG↗

arXiv2024

Inertial Confinement Fusion Forecasting via Large Language Models

Controlled fusion energy is deemed pivotal for the advancement of human civilization. In this study, we introduce $\textbf{LPI-LLM}$, a novel integration of Large Language Models (LLMs) with classical reservoir computing paradigms tailored to address a critical challenge, Laser-Plasma Instabilities ($\texttt{LPI}$), in Inertial Confinement Fusion ($\texttt{ICF}$). Our approach offers several key contributions: Firstly, we propose the $\textit{LLM-anchored Reservoir}$, augmented with a $\textit{Fusion-specific Prompt}$, enabling accurate forecasting of $\texttt{LPI}$-generated-hot electron dynamics during implosion. Secondly, we develop $\textit{Signal-Digesting Channels}$ to temporally and spatially describe the driver laser intensity across time, capturing the unique characteristics of $\texttt{ICF}$ inputs. Lastly, we design the $\textit{Confidence Scanner}$ to quantify the confidence level in forecasting, providing valuable insights for domain experts to design the $\texttt{ICF}$ process. Extensive experiments demonstrate the superior performance of our method, achieving 1.90 CAE, 0.14 $\texttt{top-1}$ MAE, and 0.11 $\texttt{top-5}$ MAE in predicting Hard X-ray ($\texttt{HXR}$) energies emitted by the hot electrons in $\texttt{ICF}$ implosions, which presents state-of-the-art comparisons against concurrent best systems. Additionally, we present $\textbf{LPI4AI}$, the first $\texttt{LPI}$ benchmark based on physical experiments, aimed at fostering novel ideas in $\texttt{LPI}$ research and enhancing the utility of LLMs in scientific exploration. Overall, our work strives to forge an innovative synergy between AI and $\texttt{ICF}$ for advancing fusion energy.

cs.LG↗

arXiv2024

Diff-PIC: Revolutionizing Particle-In-Cell Nuclear Fusion Simulation with Diffusion Models

The rapid development of AI highlights the pressing need for sustainable energy, a critical global challenge for decades. Nuclear fusion, generally seen as an ultimate solution, has been the focus of intensive research for nearly a century, with investments reaching hundreds of billions of dollars. Recent advancements in Inertial Confinement Fusion have drawn significant attention to fusion research, in which Laser-Plasma Interaction (LPI) is critical for ensuring fusion stability and efficiency. However, the complexity of LPI upon fusion ignition makes analytical approaches impractical, leaving researchers depending on extremely computation-demanding Particle-in-Cell (PIC) simulations to generate data, presenting a significant bottleneck to advancing fusion research. In response, this work introduces Diff-PIC, a novel framework that leverages conditional diffusion models as a computationally efficient alternative to PIC simulations for generating high-fidelity scientific LPI data. In this work, physical patterns captured by PIC simulations are distilled into diffusion models associated with two tailored enhancements: (1) To effectively capture the complex relationships between physical parameters and corresponding outcomes, the parameters are encoded in a physically-informed manner. (2) To further enhance efficiency while maintaining high fidelity and physical validity, the rectified flow technique is employed to transform our model into a one-step conditional diffusion model. Experimental results show that Diff-PIC achieves 16,200$\times$ speedup compared to traditional PIC on a 100 picosecond simulation, with an average reduction in MAE / RMSE / FID of 59.21% / 57.15% / 39.46% with respect to two other SOTA data generation approaches.

physics.comp-ph↗

arXiv2024

Long-range gene expression prediction with token alignment of large language model

Gene expression is a cellular process that plays a fundamental role in human phenotypical variations and diseases. Despite advances of deep learning models for gene expression prediction, recent benchmarks have revealed their inability to learn distal regulatory grammar. Here, we address this challenge by leveraging a pretrained large language model to enhance gene expression prediction. We introduce Genetic sequence Token Alignment (GTA), which aligns genetic sequence features with natural language tokens, allowing for symbolic reasoning of genomic sequence features via the frozen language model. This cross-modal adaptation learns the regulatory grammar and allows us to further incorporate gene-specific human annotations as prompts, enabling in-context learning that is not possible with existing models. Trained on lymphoblastoid cells, GTA was evaluated on cells from the Geuvadis consortium and outperforms state-of-the-art models such as Enformer, achieving a Spearman correlation of 0.65, a 10\% improvement. Additionally, GTA offers improved interpretation of long-range interactions through the identification of the most meaningful sections of the input genetic context. GTA represents a powerful and novel cross-modal approach to gene expression prediction by utilizing a pretrained language model, in a paradigm shift from conventional gene expression models trained only on sequence data.

q-bio.CB↗

arXiv2024

Object-Conditioned Energy-Based Attention Map Alignment in Text-to-Image Diffusion Models

Text-to-image diffusion models have shown great success in generating high-quality text-guided images. Yet, these models may still fail to semantically align generated images with the provided text prompts, leading to problems like incorrect attribute binding and/or catastrophic object neglect. Given the pervasive object-oriented structure underlying text prompts, we introduce a novel object-conditioned Energy-Based Attention Map Alignment (EBAMA) method to address the aforementioned problems. We show that an object-centric attribute binding loss naturally emerges by approximately maximizing the log-likelihood of a $z$-parameterized energy-based model with the help of the negative sampling technique. We further propose an object-centric intensity regularizer to prevent excessive shifts of objects attention towards their attributes. Extensive qualitative and quantitative experiments, including human evaluation, on several challenging benchmarks demonstrate the superior performance of our method over previous strong counterparts. With better aligned attention maps, our approach shows great promise in further enhancing the text-controlled image editing ability of diffusion models.

cs.CV↗

arXiv2024

Think Twice Before You Act: Improving Inverse Problem Solving With MCMC

Recent studies demonstrate that diffusion models can serve as a strong prior for solving inverse problems. A prominent example is Diffusion Posterior Sampling (DPS), which approximates the posterior distribution of data given the measure using Tweedie's formula. Despite the merits of being versatile in solving various inverse problems without re-training, the performance of DPS is hindered by the fact that this posterior approximation can be inaccurate especially for high noise levels. Therefore, we propose \textbf{D}iffusion \textbf{P}osterior \textbf{MC}MC (\textbf{DPMC}), a novel inference algorithm based on Annealed MCMC to solve inverse problems with pretrained diffusion models. We define a series of intermediate distributions inspired by the approximated conditional distributions used by DPS. Through annealed MCMC sampling, we encourage the samples to follow each intermediate distribution more closely before moving to the next distribution at a lower noise level, and therefore reduce the accumulated error along the path. We test our algorithm in various inverse problems, including super resolution, Gaussian deblurring, motion deblurring, inpainting, and phase retrieval. Our algorithm outperforms DPS with less number of evaluations across nearly all tasks, and is competitive among existing approaches.

stat.ML↗

arXiv2024

LLM3:Large Language Model-based Task and Motion Planning with Motion Failure Reasoning

Conventional Task and Motion Planning (TAMP) approaches rely on manually crafted interfaces connecting symbolic task planning with continuous motion generation. These domain-specific and labor-intensive modules are limited in addressing emerging tasks in real-world settings. Here, we present LLM^3, a novel Large Language Model (LLM)-based TAMP framework featuring a domain-independent interface. Specifically, we leverage the powerful reasoning and planning capabilities of pre-trained LLMs to propose symbolic action sequences and select continuous action parameters for motion planning. Crucially, LLM^3 incorporates motion planning feedback through prompting, allowing the LLM to iteratively refine its proposals by reasoning about motion failure. Consequently, LLM^3 interfaces between task planning and motion planning, alleviating the intricate design process of handling domain-specific messages between them. Through a series of simulations in a box-packing domain, we quantitatively demonstrate the effectiveness of LLM^3 in solving TAMP problems and the efficiency in selecting action parameters. Ablation studies underscore the significant contribution of motion failure reasoning to the success of LLM^3. Furthermore, we conduct qualitative experiments on a physical manipulator, demonstrating the practical applicability of our approach in real-world settings.

cs.RO↗

arXiv2024

InterPreT: Interactive Predicate Learning from Language Feedback for Generalizable Task Planning

Learning abstract state representations and knowledge is crucial for long-horizon robot planning. We present InterPreT, an LLM-powered framework for robots to learn symbolic predicates from language feedback of human non-experts during embodied interaction. The learned predicates provide relational abstractions of the environment state, facilitating the learning of symbolic operators that capture action preconditions and effects. By compiling the learned predicates and operators into a PDDL domain on-the-fly, InterPreT allows effective planning toward arbitrary in-domain goals using a PDDL planner. In both simulated and real-world robot manipulation domains, we demonstrate that InterPreT reliably uncovers the key predicates and operators governing the environment dynamics. Although learned from simple training tasks, these predicates and operators exhibit strong generalization to novel tasks with significantly higher complexity. In the most challenging generalization setting, InterPreT attains success rates of 73% in simulation and 40% in the real world, substantially outperforming baseline methods.

cs.RO↗

arXiv2024

Neural-Symbolic Recursive Machine for Systematic Generalization

Current learning models often struggle with human-like systematic generalization, particularly in learning compositional rules from limited data and extrapolating them to novel combinations. We introduce the Neural-Symbolic Recursive Machine (NSR), whose core is a Grounded Symbol System (GSS), allowing for the emergence of combinatorial syntax and semantics directly from training data. The NSR employs a modular design that integrates neural perception, syntactic parsing, and semantic reasoning. These components are synergistically trained through a novel deduction-abduction algorithm. Our findings demonstrate that NSR's design, imbued with the inductive biases of equivariance and compositionality, grants it the expressiveness to adeptly handle diverse sequence-to-sequence tasks and achieve unparalleled systematic generalization. We evaluate NSR's efficacy across four challenging benchmarks designed to probe systematic generalization capabilities: SCAN for semantic parsing, PCFG for string manipulation, HINT for arithmetic reasoning, and a compositional machine translation task. The results affirm NSR's superiority over contemporary neural and hybrid models in terms of generalization and transferability.

cs.LG↗

arXiv2024

Learning Concept-Based Causal Transition and Symbolic Reasoning for Visual Planning

Visual planning simulates how humans make decisions to achieve desired goals in the form of searching for visual causal transitions between an initial visual state and a final visual goal state. It has become increasingly important in egocentric vision with its advantages in guiding agents to perform daily tasks in complex environments. In this paper, we propose an interpretable and generalizable visual planning framework consisting of i) a novel Substitution-based Concept Learner (SCL) that abstracts visual inputs into disentangled concept representations, ii) symbol abstraction and reasoning that performs task planning via the self-learned symbols, and iii) a Visual Causal Transition model (ViCT) that grounds visual causal transitions to semantically similar real-world actions. Given an initial state, we perform goal-conditioned visual planning with a symbolic reasoning method fueled by the learned representations and causal transitions to reach the goal state. To verify the effectiveness of the proposed model, we collect a large-scale visual planning dataset based on AI2-THOR, dubbed as CCTP. Extensive experiments on this challenging dataset demonstrate the superior performance of our method in visual task planning. Empirically, we show that our framework can generalize to unseen task trajectories, unseen object categories, and real-world data. Further details of this work are provided at https://fqyqc.github.io/ConTranPlan/.

cs.AI↗

arXiv2024

Learning for Transductive Threshold Calibration in Open-World Recognition

In deep metric learning for visual recognition, the calibration of distance thresholds is crucial for achieving desired model performance in the true positive rates (TPR) or true negative rates (TNR). However, calibrating this threshold presents challenges in open-world scenarios, where the test classes can be entirely disjoint from those encountered during training. We define the problem of finding distance thresholds for a trained embedding model to achieve target performance metrics over unseen open-world test classes as open-world threshold calibration. Existing posthoc threshold calibration methods, reliant on inductive inference and requiring a calibration dataset with a similar distance distribution as the test data, often prove ineffective in open-world scenarios. To address this, we introduce OpenGCN, a Graph Neural Network-based transductive threshold calibration method with enhanced adaptability and robustness. OpenGCN learns to predict pairwise connectivity for the unlabeled test instances embedded in a graph to determine its TPR and TNR at various distance thresholds, allowing for transductive inference of the distance thresholds which also incorporates test-time information. Extensive experiments across open-world visual recognition benchmarks validate OpenGCN's superiority over existing posthoc calibration methods for open-world threshold calibration.

cs.CV↗

arXiv2024

Threshold-Consistent Margin Loss for Open-World Deep Metric Learning

Existing losses used in deep metric learning (DML) for image retrieval often lead to highly non-uniform intra-class and inter-class representation structures across test classes and data distributions. When combined with the common practice of using a fixed threshold to declare a match, this gives rise to significant performance variations in terms of false accept rate (FAR) and false reject rate (FRR) across test classes and data distributions. We define this issue in DML as threshold inconsistency. In real-world applications, such inconsistency often complicates the threshold selection process when deploying commercial image retrieval systems. To measure this inconsistency, we propose a novel variance-based metric called Operating-Point-Inconsistency-Score (OPIS) that quantifies the variance in the operating characteristics across classes. Using the OPIS metric, we find that achieving high accuracy levels in a DML model does not automatically guarantee threshold consistency. In fact, our investigation reveals a Pareto frontier in the high-accuracy regime, where existing methods to improve accuracy often lead to degradation in threshold consistency. To address this trade-off, we introduce the Threshold-Consistent Margin (TCM) loss, a simple yet effective regularization technique that promotes uniformity in representation structures across classes by selectively penalizing hard sample pairs. Extensive experiments demonstrate TCM's effectiveness in enhancing threshold consistency while preserving accuracy, simplifying the threshold selection process in practical DML settings.

cs.CV↗

arXiv2024

Emergence of Grid-like Representations by Training Recurrent Networks with Conformal Normalization

Grid cells in the entorhinal cortex of mammalian brains exhibit striking hexagon grid firing patterns in their response maps as the animal (e.g., a rat) navigates in a 2D open environment. In this paper, we study the emergence of the hexagon grid patterns of grid cells based on a general recurrent neural network (RNN) model that captures the navigation process. The responses of grid cells collectively form a high dimensional vector, representing the 2D self-position of the agent. As the agent moves, the vector is transformed by an RNN that takes the velocity of the agent as input. We propose a simple yet general conformal normalization of the input velocity of the RNN, so that the local displacement of the position vector in the high-dimensional neural space is proportional to the local displacement of the agent in the 2D physical space, regardless of the direction of the input velocity. We apply this mechanism to both a linear RNN and nonlinear RNNs. Theoretically, we provide an understanding that explains the connection between conformal normalization and the emergence of hexagon grid patterns. Empirically, we conduct extensive experiments to verify that conformal normalization is crucial for the emergence of hexagon grid patterns, across various types of RNNs. The learned patterns share similar profiles to biological grid cells, and the topological properties of the patterns also align with our theoretical understanding.

q-bio.NC↗

arXiv2024

Efficient and Scalable Fine-Tune of Language Models for Genome Understanding

Although DNA foundation models have advanced the understanding of genomes, they still face significant challenges in the limited scale and diversity of genomic data. This limitation starkly contrasts with the success of natural language foundation models, which thrive on substantially larger scales. Furthermore, genome understanding involves numerous downstream genome annotation tasks with inherent data heterogeneity, thereby necessitating more efficient and robust fine-tuning methods tailored for genomics. Here, we present \textsc{Lingo}: \textsc{L}anguage prefix f\textsc{In}e-tuning for \textsc{G}en\textsc{O}mes. Unlike DNA foundation models, \textsc{Lingo} strategically leverages natural language foundation models' contextual cues, recalibrating their linguistic knowledge to genomic sequences. \textsc{Lingo} further accommodates numerous, heterogeneous downstream fine-tune tasks by an adaptive rank sampling method that prunes and stochastically reintroduces pruned singular vectors within small computational budgets. Adaptive rank sampling outperformed existing fine-tuning methods on all benchmarked 14 genome understanding tasks, while requiring fewer than 2\% of trainable parameters as genomic-specific adapters. Impressively, applying these adapters on natural language foundation models matched or even exceeded the performance of DNA foundation models. \textsc{Lingo} presents a new paradigm of efficient and scalable genome understanding via genomic-specific adapters on language models.

q-bio.GN↗

arXiv2024

Molecule Design by Latent Prompt Transformer

This paper proposes a latent prompt Transformer model for solving challenging optimization problems such as molecule design, where the goal is to find molecules with optimal values of a target chemical or biological property that can be computed by an existing software. Our proposed model consists of three components. (1) A latent vector whose prior distribution is modeled by a Unet transformation of a Gaussian white noise vector. (2) A molecule generation model that generates the string-based representation of molecule conditional on the latent vector in (1). We adopt the causal Transformer model that takes the latent vector in (1) as prompt. (3) A property prediction model that predicts the value of the target property of a molecule based on a non-linear regression on the latent vector in (1). We call the proposed model the latent prompt Transformer model. After initial training of the model on existing molecules and their property values, we then gradually shift the model distribution towards the region that supports desired values of the target property for the purpose of molecule design. Our experiments show that our proposed model achieves state of the art performances on several benchmark molecule design tasks.

cs.LG↗

arXiv2024

Image Translation as Diffusion Visual Programmers

We introduce the novel Diffusion Visual Programmer (DVP), a neuro-symbolic image translation framework. Our proposed DVP seamlessly embeds a condition-flexible diffusion model within the GPT architecture, orchestrating a coherent sequence of visual programs (i.e., computer vision models) for various pro-symbolic steps, which span RoI identification, style transfer, and position manipulation, facilitating transparent and controllable image translation processes. Extensive experiments demonstrate DVP's remarkable performance, surpassing concurrent arts. This success can be attributed to several key features of DVP: First, DVP achieves condition-flexible translation via instance normalization, enabling the model to eliminate sensitivity caused by the manual guidance and optimally focus on textual descriptions for high-quality content generation. Second, the framework enhances in-context reasoning by deciphering intricate high-dimensional concepts in feature spaces into more accessible low-dimensional symbols (e.g., [Prompt], [RoI object]), allowing for localized, context-free editing while maintaining overall coherence. Last but not least, DVP improves systemic controllability and explainability by offering explicit symbolic representations at each programming stage, empowering users to intuitively interpret and modify results. Our research marks a substantial step towards harmonizing artificial image translation processes with cognitive intelligence, promising broader applications.

cs.CV↗