arXiv subjects

Yingzhen Li

Publications and source records attributed to Yingzhen Li.

At least 55 records · Page 3Linked to original sources

arXiv2024

On the Identifiability of Switching Dynamical Systems

The identifiability of latent variable models has received increasing attention due to its relevance in interpretability and out-of-distribution generalisation. In this work, we study the identifiability of Switching Dynamical Systems, taking an initial step toward extending identifiability analysis to sequential latent variable models. We first prove the identifiability of Markov Switching Models, which commonly serve as the prior distribution for the continuous latent variables in Switching Dynamical Systems. We present identification conditions for first-order Markov dependency structures, whose transition distribution is parametrised via non-linear Gaussians. We then establish the identifiability of the latent variables and non-linear mappings in Switching Dynamical Systems up to affine transformations, by leveraging identifiability analysis techniques from identifiable deep latent variable models. We finally develop estimation algorithms for identifiable Switching Dynamical Systems. Throughout empirical studies, we demonstrate the practicality of identifiable Switching Dynamical Systems for segmenting high-dimensional time series such as videos, and showcase the use of identifiable Markov Switching Models for regime-dependent causal discovery in climate data.

stat.ML↗

arXiv2024

C-TPT: Calibrated Test-Time Prompt Tuning for Vision-Language Models via Text Feature Dispersion

In deep learning, test-time adaptation has gained attention as a method for model fine-tuning without the need for labeled data. A prime exemplification is the recently proposed test-time prompt tuning for large-scale vision-language models such as CLIP. Unfortunately, these prompts have been mainly developed to improve accuracy, overlooking the importance of calibration, which is a crucial aspect for quantifying prediction uncertainty. However, traditional calibration methods rely on substantial amounts of labeled data, making them impractical for test-time scenarios. To this end, this paper explores calibration during test-time prompt tuning by leveraging the inherent properties of CLIP. Through a series of observations, we find that the prompt choice significantly affects the calibration in CLIP, where the prompts leading to higher text feature dispersion result in better-calibrated predictions. Introducing the Average Text Feature Dispersion (ATFD), we establish its relationship with calibration error and present a novel method, Calibrated Test-time Prompt Tuning (C-TPT), for optimizing prompts during test-time with enhanced calibration. Through extensive experiments on different CLIP architectures and datasets, we show that C-TPT can effectively improve the calibration of test-time prompt tuning without needing labeled data. The code is publicly accessible at https://github.com/hee-suk-yoon/C-TPT.

cs.CV↗

arXiv2024

ESD: Expected Squared Difference as a Tuning-Free Trainable Calibration Measure

Studies have shown that modern neural networks tend to be poorly calibrated due to over-confident predictions. Traditionally, post-processing methods have been used to calibrate the model after training. In recent years, various trainable calibration measures have been proposed to incorporate them directly into the training process. However, these methods all incorporate internal hyperparameters, and the performance of these calibration objectives relies on tuning these hyperparameters, incurring more computational costs as the size of neural networks and datasets become larger. As such, we present Expected Squared Difference (ESD), a tuning-free (i.e., hyperparameter-free) trainable calibration objective loss, where we view the calibration error from the perspective of the squared difference between the two expectations. With extensive experiments on several architectures (CNNs, Transformers) and datasets, we demonstrate that (1) incorporating ESD into the training improves model calibration in various batch size settings without the need for internal hyperparameter tuning, (2) ESD yields the best-calibrated results compared with previous approaches, and (3) ESD drastically improves the computational costs required for calibration during training due to the absence of internal hyperparameter. The code is publicly accessible at https://github.com/hee-suk-yoon/ESD.

cs.LG↗

arXiv2023

Energy Discrepancies: A Score-Independent Loss for Energy-Based Models

Energy-based models are a simple yet powerful class of probabilistic models, but their widespread adoption has been limited by the computational burden of training them. We propose a novel loss function called Energy Discrepancy (ED) which does not rely on the computation of scores or expensive Markov chain Monte Carlo. We show that ED approaches the explicit score matching and negative log-likelihood loss under different limits, effectively interpolating between both. Consequently, minimum ED estimation overcomes the problem of nearsightedness encountered in score-based estimation methods, while also enjoying theoretical guarantees. Through numerical experiments, we demonstrate that ED learns low-dimensional data distributions faster and more accurately than explicit score matching or contrastive divergence. For high-dimensional image data, we describe how the manifold hypothesis puts limitations on our approach and demonstrate the effectiveness of energy discrepancy by training the energy-based model as a prior of a variational decoder model.

stat.ML↗

arXiv2023

Markovian Gaussian Process Variational Autoencoders

Sequential VAEs have been successfully considered for many high-dimensional time series modelling problems, with many variant models relying on discrete-time mechanisms such as recurrent neural networks (RNNs). On the other hand, continuous-time methods have recently gained attraction, especially in the context of irregularly-sampled time series, where they can better handle the data than discrete-time methods. One such class are Gaussian process variational autoencoders (GPVAEs), where the VAE prior is set as a Gaussian process (GP). However, a major limitation of GPVAEs is that it inherits the cubic computational cost as GPs, making it unattractive to practioners. In this work, we leverage the equivalent discrete state space representation of Markovian GPs to enable linear time GPVAE training via Kalman filtering and smoothing. For our model, Markovian GPVAE (MGPVAE), we show on a variety of high-dimensional temporal and spatiotemporal tasks that our method performs favourably compared to existing approaches whilst being computationally highly scalable.

cs.LG↗

arXiv2023

Training Discrete Energy-Based Models with Energy Discrepancy

Training energy-based models (EBMs) on discrete spaces is challenging because sampling over such spaces can be difficult. We propose to train discrete EBMs with energy discrepancy (ED), a novel type of contrastive loss functional which only requires the evaluation of the energy function at data points and their perturbed counter parts, thus not relying on sampling strategies like Markov chain Monte Carlo (MCMC). Energy discrepancy offers theoretical guarantees for a broad class of perturbation processes of which we investigate three types: perturbations based on Bernoulli noise, based on deterministic transforms, and based on neighbourhood structures. We demonstrate their relative performance on lattice Ising models, binary synthetic data, and discrete image data sets.

stat.ML↗

arXiv2023

Learning Neural Set Functions Under the Optimal Subset Oracle

Learning neural set functions becomes increasingly more important in many applications like product recommendation and compound selection in AI-aided drug discovery. The majority of existing works study methodologies of set function learning under the function value oracle, which, however, requires expensive supervision signals. This renders it impractical for applications with only weak supervisions under the Optimal Subset (OS) oracle, the study of which is surprisingly overlooked. In this work, we present a principled yet practical maximum likelihood learning framework, termed as EquiVSet, that simultaneously meets the following desiderata of learning set functions under the OS oracle: i) permutation invariance of the set mass function being modeled; ii) permission of varying ground set; iii) minimum prior; and iv) scalability. The main components of our framework involve: an energy-based treatment of the set mass function, DeepSet-style architectures to handle permutation invariance, mean-field variational inference, and its amortized variants. Thanks to the elegant combination of these advanced architectures, empirical studies on three real-world applications (including Amazon product recommendation, set anomaly detection, and compound selection for virtual screening) demonstrate that EquiVSet outperforms the baselines by a large margin.

cs.LG↗

arXiv2023

Scalable Infomin Learning

The task of infomin learning aims to learn a representation with high utility while being uninformative about a specified target, with the latter achieved by minimising the mutual information between the representation and the target. It has broad applications, ranging from training fair prediction models against protected attributes, to unsupervised learning with disentangled representations. Recent works on infomin learning mainly use adversarial training, which involves training a neural network to estimate mutual information or its proxy and thus is slow and difficult to optimise. Drawing on recent advances in slicing techniques, we propose a new infomin learning approach, which uses a novel proxy metric to mutual information. We further derive an accurate and analytically computable approximation to this proxy metric, thereby removing the need of constructing neural network-based mutual information estimators. Experiments on algorithmic fairness, disentangled representation learning and domain adaptation verify that our method can effectively remove unwanted information with limited time budget.

cs.LG↗

arXiv2022

Repairing Neural Networks by Leaving the Right Past Behind

Prediction failures of machine learning models often arise from deficiencies in training data, such as incorrect labels, outliers, and selection biases. However, such data points that are responsible for a given failure mode are generally not known a priori, let alone a mechanism for repairing the failure. This work draws on the Bayesian view of continual learning, and develops a generic framework for both, identifying training examples that have given rise to the target failure, and fixing the model through erasing information about them. This framework naturally allows leveraging recent advances in continual learning to this new problem of model repairment, while subsuming the existing works on influence functions and data deletion as specific instances. Experimentally, the proposed approach outperforms the baselines for both identification of detrimental training data and fixing model failures in a generalisable manner.

cs.LG↗

arXiv2022

Aggregated Gaussian Processes with Multiresolution Earth Observation Covariates

For many survey-based spatial modelling problems, responses are observed as spatially aggregated over survey regions due to limited resources. Covariates, from weather models and satellite imageries, can be observed at many different spatial resolutions, making the pre-processing of covariates a key challenge for any spatial modelling task. We propose a Gaussian process regression model to flexibly handle multiresolution covariates by employing an additive kernel that can efficiently aggregate features across resolutions. Compared to existing approaches that rely on resolution matching, our approach better maintains distributional information across resolutions, leading to better performance and interpretability. Our model yields stronger predictive performance and interpretability on both simulated and crop yield datasets.

stat.AP↗

arXiv2021

Sparse Uncertainty Representation in Deep Learning with Inducing Weights

Bayesian neural networks and deep ensembles represent two modern paradigms of uncertainty quantification in deep learning. Yet these approaches struggle to scale mainly due to memory inefficiency issues, since they require parameter storage several times higher than their deterministic counterparts. To address this, we augment the weight matrix of each layer with a small number of inducing weights, thereby projecting the uncertainty quantification into such low dimensional spaces. We further extend Matheron's conditional Gaussian sampling rule to enable fast weight sampling, which enables our inference method to maintain reasonable run-time as compared with ensembles. Importantly, our approach achieves competitive performance to the state-of-the-art in prediction and uncertainty estimation tasks with fully connected neural networks and ResNets, while reducing the parameter size to $\leq 24.3\%$ of that of a $single$ neural network.

stat.ML↗

arXiv2021

A Principled Approach to Failure Analysis and Model Repairment: Demonstration in Medical Imaging

Machine learning models commonly exhibit unexpected failures post-deployment due to either data shifts or uncommon situations in the training environment. Domain experts typically go through the tedious process of inspecting the failure cases manually, identifying failure modes and then attempting to fix the model. In this work, we aim to standardise and bring principles to this process through answering two critical questions: (i) how do we know that we have identified meaningful and distinct failure types?; (ii) how can we validate that a model has, indeed, been repaired? We suggest that the quality of the identified failure types can be validated through measuring the intra- and inter-type generalisation after fine-tuning and introduce metrics to compare different subtyping methods. Furthermore, we argue that a model can be considered repaired if it achieves high accuracy on the failure types while retaining performance on the previously correct data. We combine these two ideas into a principled framework for evaluating the quality of both the identified failure subtypes and model repairment. We evaluate its utility on a classification and an object detection tasks. Our code is available at https://github.com/Rokken-lab6/Failure-Analysis-and-Model-Repairment

cs.LG↗

arXiv2021

Active Slices for Sliced Stein Discrepancy

Sliced Stein discrepancy (SSD) and its kernelized variants have demonstrated promising successes in goodness-of-fit tests and model learning in high dimensions. Despite their theoretical elegance, their empirical performance depends crucially on the search of optimal slicing directions to discriminate between two distributions. Unfortunately, previous gradient-based optimisation approaches for this task return sub-optimal results: they are computationally expensive, sensitive to initialization, and they lack theoretical guarantees for convergence. We address these issues in two steps. First, we provide theoretical results stating that the requirement of using optimal slicing directions in the kernelized version of SSD can be relaxed, validating the resulting discrepancy with finite random slicing directions. Second, given that good slicing directions are crucial for practical performance, we propose a fast algorithm for finding such slicing directions based on ideas of active sub-space construction and spectral decomposition. Experiments on goodness-of-fit tests and model learning show that our approach achieves both improved performance and faster convergence. Especially, we demonstrate a 14-80x speed-up in goodness-of-fit tests when comparing with gradient-based alternatives.

cs.LG↗

arXiv2021

Interpreting diffusion score matching using normalizing flow

Scoring matching (SM), and its related counterpart, Stein discrepancy (SD) have achieved great success in model training and evaluations. However, recent research shows their limitations when dealing with certain types of distributions. One possible fix is incorporating the original score matching (or Stein discrepancy) with a diffusion matrix, which is called diffusion score matching (DSM) (or diffusion Stein discrepancy (DSD)). However, the lack of interpretation of the diffusion limits its usage within simple distributions and manually chosen matrix. In this work, we plan to fill this gap by interpreting the diffusion matrix using normalizing flows. Specifically, we theoretically prove that DSM (or DSD) is equivalent to the original score matching (or Stein discrepancy) evaluated in the transformed space defined by the normalizing flow, where the diffusion matrix is the inverse of the flow's Jacobian matrix. In addition, we also build its connection to Riemannian manifolds and further extend it to continuous flows, where the change of DSM is characterized by an ODE.

cs.LG↗

arXiv2021

Meta-Learning Divergences of Variational Inference

Variational inference (VI) plays an essential role in approximate Bayesian inference due to its computational efficiency and broad applicability. Crucial to the performance of VI is the selection of the associated divergence measure, as VI approximates the intractable distribution by minimizing this divergence. In this paper we propose a meta-learning algorithm to learn the divergence metric suited for the task of interest, automating the design of VI methods. In addition, we learn the initialization of the variational parameters without additional cost when our method is deployed in the few-shot learning scenarios. We demonstrate our approach outperforms standard VI on Gaussian mixture distribution approximation, Bayesian neural network regression, image generation with variational autoencoders and recommender systems with a partial variational autoencoder.

cs.LG↗

arXiv2021

Learning Sparse Sentence Encoding without Supervision: An Exploration of Sparsity in Variational Autoencoders

It has been long known that sparsity is an effective inductive bias for learning efficient representation of data in vectors with fixed dimensionality, and it has been explored in many areas of representation learning. Of particular interest to this work is the investigation of the sparsity within the VAE framework which has been explored a lot in the image domain, but has been lacking even a basic level of exploration in NLP. Additionally, NLP is also lagging behind in terms of learning sparse representations of large units of text e.g., sentences. We use the VAEs that induce sparse latent representations of large units of text to address the aforementioned shortcomings. First, we move in this direction by measuring the success of unsupervised state-of-the-art (SOTA) and other strong VAE-based sparsification baselines for text and propose a hierarchical sparse VAE model to address the stability issue of SOTA. Then, we look at the implications of sparsity on text classification across 3 datasets, and highlight a link between performance of sparse latent representations on downstream tasks and its ability to encode task-related information.

cs.CL↗

arXiv2021

Contextual HyperNetworks for Novel Feature Adaptation

While deep learning has obtained state-of-the-art results in many applications, the adaptation of neural network architectures to incorporate new output features remains a challenge, as neural networks are commonly trained to produce a fixed output dimension. This issue is particularly severe in online learning settings, where new output features, such as items in a recommender system, are added continually with few or no associated observations. As such, methods for adapting neural networks to novel features which are both time and data-efficient are desired. To address this, we propose the Contextual HyperNetwork (CHN), an auxiliary model which generates parameters for extending the base model to a new feature, by utilizing both existing data as well as any observations and/or metadata associated with the new feature. At prediction time, the CHN requires only a single forward pass through a neural network, yielding a significant speed-up when compared to re-training and fine-tuning approaches. To assess the performance of CHNs, we use a CHN to augment a partial variational autoencoder (P-VAE), a deep generative model which can impute the values of missing features in sparsely-observed data. We show that this system obtains improved few-shot learning performance for novel features over existing imputation and meta-learning baselines across recommender systems, e-learning, and healthcare tasks.

cs.LG↗

arXiv2021

Sliced Kernelized Stein Discrepancy

Kernelized Stein discrepancy (KSD), though being extensively used in goodness-of-fit tests and model learning, suffers from the curse-of-dimensionality. We address this issue by proposing the sliced Stein discrepancy and its scalable and kernelized variants, which employ kernel-based test functions defined on the optimal one-dimensional projections. When applied to goodness-of-fit tests, extensive experiments show the proposed discrepancy significantly outperforms KSD and various baselines in high dimensions. For model learning, we show its advantages over existing Stein discrepancy baselines by training independent component analysis models with different discrepancies. We further propose a novel particle inference method called sliced Stein variational gradient descent (S-SVGD) which alleviates the mode-collapse issue of SVGD in training variational autoencoders.

cs.LG↗