arXiv subjects

Yixin Chen

Publications and source records attributed to Yixin Chen.

At least 55 records · Page 3Linked to original sources

arXiv2026

Omni-Weather: A Unified Multimodal Model for Weather Radar Understanding and Generation

Weather modeling requires both accurate prediction and mechanistic interpretation, yet existing methods treat these goals in isolation, separating generation from understanding. To address this gap, we present Omni-Weather, the first multimodal foundation model that unifies weather generation and understanding within a single architecture. Omni-Weather integrates a radar encoder for weather generation tasks, followed by unified processing using a shared self-attention mechanism. Moreover, we construct a Chain-of-Thought dataset for causal reasoning in weather generation, enabling interpretable outputs and improved perceptual quality. Extensive experiments show Omni-Weather achieves state-of-the-art performance in both weather generation and understanding. Our findings further indicate that generative and understanding tasks in the weather domain can mutually enhance each other. Omni-Weather also demonstrates the feasibility and value of unifying weather generation and understanding.

cs.CV↗

arXiv2026

LEO-VL: Efficient Scene Representation for Scalable 3D Vision-Language Learning

Developing vision-language models (VLMs) capable of understanding 3D scenes has been a longstanding research goal. Despite recent progress, 3D VLMs still struggle with spatial reasoning and robustness. We identify three key obstacles hindering their progress: (1) scene representation is constrained by a capacity-efficiency trade-off, which impedes scalable learning; (2) training data lacks a comprehensive scheme, with limited diversity across tasks and scene domains; and (3) models exhibit robustness deficiencies and lack effective post-training. To address these challenges, we first propose condensed feature grid (CFG), an efficient scene representation that significantly reduces token overhead while preserving strong perceptual capacity. Building on CFG, we introduce LEO-VL, a 3D VLM trained on over 700k 3D vision-language (3D-VL) data spanning four real-world indoor domains and five tasks such as captioning and dialogue. To further improve robustness, we propose SceneDPO, a novel post-training objective that incorporates contrastive signals across both answers and scenes. LEO-VL achieves state-of-the-art performance on various 3D-VL benchmarks, such as SQA3D, Beacon3D, and Scan2Cap. Extensive analyses highlight the efficiency of CFG and provide key insights such as the importance of task and scene diversity, the priority of data quality for effective scaling, and the advantages of SceneDPO.

cs.CV↗

arXiv2026

Hyperbolic Multiview Pretraining for Robotic Manipulation

3D-aware visual pretraining has proven effective in improving the performance of downstream robotic manipulation tasks. However, existing methods are constrained to Euclidean embedding spaces, whose flat geometry limits their ability to model structural relations among embeddings. As a result, they struggle to learn structured embeddings that are essential for robust spatial perception in robotic applications. To this end, we propose HyperMVP, a self-supervised framework for \underline{Hyper}bolic \underline{M}ulti\underline{V}iew \underline{P}retraining. Hyperbolic space offers geometric properties well suited for capturing structural relations. Methodologically, we extend the masked autoencoder paradigm and design a GeoLink encoder to learn multiview hyperbolic representations. The pretrained encoder is then finetuned with visuomotor policies on manipulation tasks. In addition, we introduce 3D-MOV, a large-scale dataset comprising multiple types of 3D point clouds to support pretraining. We evaluate HyperMVP on COLOSSEUM, RLBench, and real-world scenarios, where it consistently outperforms strong baselines across diverse tasks and perturbation settings. Our results highlight the potential of 3D-aware pretraining in a non-Euclidean space for learning robust and generalizable robotic manipulation policies.

cs.RO↗

arXiv2026

Factorized Neural Implicit DMD for Parametric Dynamics

A data-driven, model-free approach to modeling the temporal evolution of physical systems mitigates the need for explicit knowledge of the governing equations. Even when physical priors such as partial differential equations are available, such systems often reside in high-dimensional state spaces and exhibit nonlinear dynamics, making traditional numerical solvers computationally expensive and ill-suited for real-time analysis and control. Consider the problem of learning a parametric flow of a dynamical system: with an initial field and a set of physical parameters, we aim to predict the system's evolution over time in a way that supports long-horizon rollouts, generalization to unseen parameters, and spectral analysis. We propose a physics-coded neural field parameterization of the Koopman operator's spectral decomposition. Unlike a physics-constrained neural field, which fits a single solution surface, and neural operators, which directly approximate the solution operator at fixed time horizons, our model learns a factorized flow operator that decouples spatial modes and temporal evolution. This structure exposes underlying eigenvalues, modes, and stability of the underlying physical process to enable stable long-term rollouts, interpolation across parameter spaces, and spectral analysis. We demonstrate the efficacy of our method on a range of dynamics problems, showcasing its ability to accurately predict complex spatiotemporal phenomena while providing insights into the system's dynamic behavior.

cs.LG↗

arXiv2026

RANGER: Sparsely-Gated Mixture-of-Experts with Adaptive Retrieval Re-ranking for Pathology Report Generation

Pathology report generation remains a relatively under-explored downstream task, primarily due to the gigapixel scale and complex morphological heterogeneity of Whole Slide Images (WSIs). Existing pathology report generation frameworks typically employ transformer architectures, relying on a homogeneous decoder architecture and static knowledge retrieval integration. Such architectures limit generative specialization and may introduce noisy external guidance during the report generation process. To address these limitations, we propose RANGER, a sparsely-gated Mixture-of-Experts (MoE) framework with adaptive retrieval re-ranking for pathology report generation. Specifically, we integrate a sparsely gated MoE into the decoder, along with noisy top-$k$ routing and load-balancing regularization, to enable dynamic expert specialization across various diagnostic patterns. Additionally, we introduce an adaptive retrieval re-ranking module that selectively refines retrieved memory from a knowledge base before integration, reducing noise and improving semantic alignment based on visual feature representations. We perform extensive experiments on the PathText-BRCA dataset and demonstrate consistent improvements over existing approaches across standard natural language generation metrics. Our full RANGER model achieves optimal performance on PathText dataset, reaching BLEU-1 to BLEU-4 scores of 0.4598, 0.3044, 0.2036, and 0.1435, respectively, with METEOR of 0.1883, and ROUGE-L of 0.3038, validating the effectiveness of dynamic expert routing and adaptive knowledge refinement for semantically grounded pathology report generation.

cs.CV↗

arXiv2026

PreSight: Preoperative Outcome Prediction for Parkinson's Disease via Region-Prior Morphometry and Patient-Specific Weighting

Preoperative improvement rate prediction for Parkinson's disease surgery is clinically important yet difficult because imaging signals are subtle and patients are heterogeneous. We address this setting, where only information available before surgery is used, and the goal is to predict patient-specific postoperative motor benefit. We present PreSight, a presurgical outcome model that fuses clinical priors with preoperative MRI and deformation-based morphometry (DBM) and adapts regional importance through a patient-specific weighting module. The model produces end-to-end, calibrated, decision-ready predictions with patient-level explanations. We evaluate PreSight on a real-world two-center cohort of 400 subjects with multimodal presurgical inputs and postoperative improvement labels. PreSight outperforms strong clinical, imaging-only, and multimodal baselines. It attains 88.89% accuracy on internal validation and 85.29% on an external-center test for responder classification and shows better probability calibration and higher decision-curve net benefit. Ablations and analyses confirm the contribution of DBM and the patient-specific weighting module and indicate that the model emphasizes disease-relevant regions in a patient-specific manner. These results demonstrate that integrating clinical prior knowledge with region-adaptive morphometry enables reliable presurgical decision support in routine practice.

cs.CV↗

arXiv2026

G4Splat: Geometry-Guided Gaussian Splatting with Generative Prior

Despite recent advances in leveraging generative prior from pre-trained diffusion models for 3D scene reconstruction, existing methods still face two critical limitations. First, due to the lack of reliable geometric supervision, they struggle to produce high-quality reconstructions even in observed regions, let alone in unobserved areas. Second, they lack effective mechanisms to mitigate multi-view inconsistencies in the generated images, leading to severe shape-appearance ambiguities and degraded scene geometry. In this paper, we identify accurate geometry as the fundamental prerequisite for effectively exploiting generative models to enhance 3D scene reconstruction. We first propose to leverage the prevalence of planar structures to derive accurate metric-scale depth maps, providing reliable supervision in both observed and unobserved regions. Furthermore, we incorporate this geometry guidance throughout the generative pipeline to improve visibility mask estimation, guide novel view selection, and enhance multi-view consistency when inpainting with video diffusion models, resulting in accurate and consistent scene completion. Extensive experiments on Replica, ScanNet++, DeepBlending and Mip-NeRF 360 show that our method consistently outperforms existing baselines in both geometry and appearance reconstruction, particularly for unobserved regions. Moreover, our method naturally supports single-view inputs and unposed videos, with strong generalizability in both indoor and outdoor scenarios with practical real-world applicability. The project page is available at https://dali-jack.github.io/g4splat-web/.

cs.CV↗

arXiv2026

Rethinking Flexible Graph Similarity Computation: One-step Alignment with Global Guidance

Graph Edit Distance (GED) is a widely used measure of graph similarity, valued for its flexibility in encoding domain knowledge through operation costs. However, existing learning-based approximation methods follow a modeling paradigm that decouples local candidate match selection from both operation costs and global dependencies between matches. This decoupling undermines their ability to capture the intrinsic flexibility of GED and often forces them to rely on costly iterative refinement to obtain accurate alignments. In this work, we revisit the formulation of GED and revise the prevailing paradigm, and propose Graph Edit Network (GEN), an implementation of the revised formulation that tightly integrates cost-aware expense estimation with globally guided one-step alignment. Specifically, GEN incorporates operation costs into node matching expenses estimation, ensuring match decisions respect the specified cost setting. Furthermore, GEN models match dependencies within and across graphs, capturing each match's impact on the overall alignment. These designs enable accurate GED approximation without iterative refinement. Extensive experiments on real-world and synthetic benchmarks demonstrate that GEN achieves up to a 37.8% reduction in GED predictive errors, while increasing inference throughput by up to 414x. These results highlight GEN's practical efficiency and the effectiveness of the revision. Beyond this implementation, our revision provides a principled framework for advancing learning-based GED approximation.

cs.LG↗

arXiv2026

ReFilter: Improving Robustness of Retrieval-Augmented Generation via Gated Filter

Retrieval-augmented generation (RAG) has become a dominant paradigm for grounding large language models (LLMs) with external evidence in knowledge-intensive question answering. A core design choice is how to fuse retrieved samples into the LLMs, where existing internal fusion approaches broadly fall into query-based fusion, parametric fusion, and latent-based fusion. Despite their effectiveness at modest retrieval scales, these methods often fail to scale gracefully as the number of retrieved candidates k increases: Larger k improves evidence coverage, yet realistic top-k retrieval inevitably contains irrelevant or redundant content and increases the inference cost. To address these limitations, we propose ReFilter, a novel latent-based fusion framework that performs token-level filtering and fusion. ReFilter consists of three key components: a context encoder for encoding context features, a gated filter for weighting each token, and a token fusion module for integrating the weighted token feature into the LLM's hidden states. Our experiments across four general-domain QA benchmarks show that ReFilter consistently achieves the best average performance under both in-domain adaptation and out-of-domain transfer. ReFilter further generalizes to five biomedical QA benchmarks in zero-shot transfer without domain fine-tuning, reaching 70.01% average accuracy with Qwen2.5-14B-Instruct.

cs.CL↗

arXiv2026

High-Performance Moment-Encoded Lattice Boltzmann Method with Stability-Guided Quantization

In this work, we present a memory-efficient, high-performance GPU framework for moment-based lattice Boltzmann methods (LBM) with fluid-solid coupling. We introduce a split-kernel scheme that decouples fluid updates from solid boundary handling, substantially reducing warp divergence and improving utilization on GPUs. We further perform the first von Neumann stability analysis of the high-order moment-encoded LBM (HOME-LBM) formulation, characterizing its spectral behavior and deriving stability bounds for individual moment components. These theoretical insights directly guide a practical 16-bit moment quantization without compromising numerical stability. Our framework achieves up to 6x speedup and reduces GPU memory footprint by up to 50% in fluid-only scenarios and 25% in scenes with complex solid boundaries compared to the state-of-the-art LBM solver, while preserving physical fidelity across a range of large-scale benchmarks and real-time demonstrations. The proposed approach enables scalable, stable, and high-resolution LBM simulation on a single GPU, bridging theoretical stability analysis with practical GPU algorithm design.

cs.GR↗

arXiv2026

OmniCellTOSG: The First Cell Text-Omic Signaling Graphs Dataset for Graph Language Foundation Modeling

With the rapid growth of large-scale single-cell omic datasets, omic foundation models (FMs) have emerged as powerful tools for advancing research in life sciences and precision medicine. However, most existing omic FMs rely primarily on numerical transcriptomic data by sorting genes as sequences, while lacking explicit integration of biomedical prior knowledge and signaling interactions that are critical for scientific discovery. Here, we introduce the Text-Omic Signaling Graph (TOSG), a novel data structure that unifies human-interpretable biomedical textual knowledge, quantitative omic data, and signaling network information. Using this framework, we construct OmniCellTOSG, a large-scale resource comprising approximately half million meta-cell TOSGs derived from around 80 million single-cell and single-nucleus RNA-seq profiles across organs and diseases. We further develop CellTOSG-FM, a multimodal graph language FM, to jointly analyze textual, omic and signaling network context. Across diverse downstream tasks, CellTOSG-FM outperforms existing omic FMs, and provides interpretable insights into disease-associated targets and signaling pathways.

cs.AI↗

arXiv2026

Bicriteria Algorithms for Submodular Cover with Partition and Fairness Constraints

In many submodular optimization applications, datasets are naturally partitioned into disjoint subsets. These scenarios give rise to submodular optimization problems with partition-based constraints, where the desired solution set should be in some sense balanced, fair, or resource-constrained across these partitions. While existing work on submodular cover largely overlooks this structure, we initiate a comprehensive study of the problem of Submodular Cover with Partition Constraints (SCP) and its key variants. Our main contributions are the development and analysis of scalable bicriteria approximation algorithms for these NP-hard optimization problems for both monotone and nonmonotone objectives. Notably, the algorithms proposed for the monotone case achieve optimal approximation guarantees while significantly reducing query complexity compared to existing methods. Finally, empirical evaluations on real-world and synthetic datasets further validate the efficiency and effectiveness of the proposed algorithms.

cs.DS↗

arXiv2026

GaussianFluent: Gaussian Simulation for Dynamic Scenes with Mixed Materials

3D Gaussian Splatting (3DGS) has emerged as a prominent 3D representation for high-fidelity and real-time rendering. Prior work has coupled physics simulation with Gaussians, but predominantly targets soft, deformable materials, leaving brittle fracture largely unresolved. This stems from two key obstacles: the lack of volumetric interiors with coherent textures in GS representation, and the absence of fracture-aware simulation methods for Gaussians. To address these challenges, we introduce GaussianFluent, a unified framework for realistic simulation and rendering of dynamic object states. First, it synthesizes photorealistic interiors by densifying internal Gaussians guided by generative models. Second, it integrates an optimized Continuum Damage Material Point Method (CD-MPM) to enable brittle fracture simulation at remarkably high speed. Our approach handles complex scenarios including mixed-material objects and multi-stage fracture propagation, achieving results infeasible with previous methods. Experiments clearly demonstrate GaussianFluent's capability for photo-realistic, real-time rendering with structurally consistent interiors, highlighting its potential for downstream application, such as VR and Robotics.

cs.CV↗

arXiv2026

SciEvalKit: An Open-source Evaluation Toolkit for Scientific General Intelligence

We introduce SciEvalKit, a unified benchmarking toolkit designed to evaluate AI models for science across a broad range of scientific disciplines and task capabilities. Unlike general-purpose evaluation platforms, SciEvalKit focuses on the core competencies of scientific intelligence, including Scientific Multimodal Perception, Scientific Multimodal Reasoning, Scientific Multimodal Understanding, Scientific Symbolic Reasoning, Scientific Code Generation, Science Hypothesis Generation and Scientific Knowledge Understanding. It supports six major scientific domains, spanning from physics and chemistry to astronomy and materials science. SciEvalKit builds a foundation of expert-grade scientific benchmarks, curated from real-world, domain-specific datasets, ensuring that tasks reflect authentic scientific challenges. The toolkit features a flexible, extensible evaluation pipeline that enables batch evaluation across models and datasets, supports custom model and dataset integration, and provides transparent, reproducible, and comparable results. By bridging capability-based evaluation and disciplinary diversity, SciEvalKit offers a standardized yet customizable infrastructure to benchmark the next generation of scientific foundation models and intelligent agents. The toolkit is open-sourced and actively maintained to foster community-driven development and progress in AI4Science.

cs.AI↗

arXiv2025

3D Scene Change Modeling With Consistent Multi-View Aggregation

Change detection plays a vital role in scene monitoring, exploration, and continual reconstruction. Existing 3D change detection methods often exhibit spatial inconsistency in the detected changes and fail to explicitly separate pre- and post-change states. To address these limitations, we propose SCaR-3D, a novel 3D scene change detection framework that identifies object-level changes from a dense-view pre-change image sequence and sparse-view post-change images. Our approach consists of a signed-distance-based 2D differencing module followed by multi-view aggregation with voting and pruning, leveraging the consistent nature of 3DGS to robustly separate pre- and post-change states. We further develop a continual scene reconstruction strategy that selectively updates dynamic regions while preserving the unchanged areas. We also contribute CCS3D, a challenging synthetic dataset that allows flexible combinations of 3D change types to support controlled evaluations. Extensive experiments demonstrate that our method achieves both high accuracy and efficiency, outperforming existing methods.

cs.CV↗

arXiv2025

Probing Scientific General Intelligence of LLMs with Scientist-Aligned Workflows

Despite advances in scientific AI, a coherent framework for Scientific General Intelligence (SGI)-the ability to autonomously conceive, investigate, and reason across scientific domains-remains lacking. We present an operational SGI definition grounded in the Practical Inquiry Model (PIM: Deliberation, Conception, Action, Perception) and operationalize it via four scientist-aligned tasks: deep research, idea generation, dry/wet experiments, and experimental reasoning. SGI-Bench comprises over 1,000 expert-curated, cross-disciplinary samples inspired by Science's 125 Big Questions, enabling systematic evaluation of state-of-the-art LLMs. Results reveal gaps: low exact match (10--20%) in deep research despite step-level alignment; ideas lacking feasibility and detail; high code executability but low execution result accuracy in dry experiments; low sequence fidelity in wet protocols; and persistent multimodal comparative-reasoning challenges. We further introduce Test-Time Reinforcement Learning (TTRL), which optimizes retrieval-augmented novelty rewards at inference, enhancing hypothesis novelty without reference answer. Together, our PIM-grounded definition, workflow-centric benchmark, and empirical insights establish a foundation for AI systems that genuinely participate in scientific discovery.

cs.AI↗

arXiv2025

GALAX: Graph-Augmented Language Model for Explainable Reinforcement-Guided Subgraph Reasoning in Precision Medicine

In precision medicine, quantitative multi-omic features, topological context, and textual biological knowledge play vital roles in identifying disease-critical signaling pathways and targets. Existing pipelines capture only part of these-numerical omics ignore topological context, text-centric LLMs lack quantitative grounded reasoning, and graph-only models underuse node semantics and the generalization of LLMs-limiting mechanistic interpretability. Although Process Reward Models (PRMs) aim to guide reasoning in LLMs, they remain limited by unreliable intermediate evaluation, and vulnerability to reward hacking with computational cost. These gaps motivate integrating quantitative multi-omic signals, topological structure with node annotations, and literature-scale text via LLMs, using subgraph reasoning as the principle bridge linking numeric evidence, topological knowledge and language context. Therefore, we propose GALAX (Graph Augmented LAnguage model with eXplainability), an innovative framework that integrates pretrained Graph Neural Networks (GNNs) into Large Language Models (LLMs) via reinforcement learning guided by a Graph Process Reward Model (GPRM), which generates disease-relevant subgraphs in a step-wise manner initiated by an LLM and iteratively evaluated by a pretrained GNN and schema-based rule check, enabling process-level supervision without explicit labels. As an application, we also introduced Target-QA, a benchmark combining CRISPR-identified targets, multi-omic profiles, and biomedical graph knowledge across diverse cancer cell lines, which enables GNN pretraining for supervising step-wise graph construction and supports long-context reasoning over text-numeric graphs (TNGs), providing a scalable and biologically grounded framework for explainable, reinforcement-guided subgraph reasoning toward reliable and interpretable target discovery in precision medicine.

cs.AI↗

arXiv2025

Fast Subspace Fluid Simulation with a Temporally-Aware Basis

We present a novel reduced-order fluid simulation technique leveraging Dynamic Mode Decomposition (DMD) to achieve fast, memory-efficient, and user-controllable subspace simulation. We demonstrate that our approach combines the strengths of both spatial reduced order models (ROMs) as well as spectral decompositions. By optimizing for the operator that evolves a system state from one timestep to the next, rather than the system state itself, we gain both the compressive power of spatial ROMs as well as the intuitive physical dynamics of spectral methods. The latter property is of particular interest in graphics applications, where user control of fluid phenomena is of high demand. We demonstrate this in various applications including spatial and temporal modulation tools and fluid upscaling with added turbulence. We adapt DMD for graphics applications by reducing computational overhead, incorporating user-defined force inputs, and optimizing memory usage with randomized SVD. The integration of OptDMD and DMD with Control (DMDc) facilitates noise-robust reconstruction and real-time user interaction. We demonstrate the technique's robustness across diverse simulation scenarios, including artistic editing, time-reversal, and super-resolution. Through experimental validation on challenging scenarios, such as colliding vortex rings and boundary-interacting plumes, our method also exhibits superior performance and fidelity with significantly fewer basis functions compared to existing spatial ROMs. The inherent linearity of the DMD operator enables unique application modes, such as time-reversible fluid simulation. This work establishes another avenue for developing real-time, high-quality fluid simulations, enriching the space of fluid simulation techniques in interactive graphics and animation.

cs.GR↗