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Yoshio Okamoto

Publications and source records attributed to Yoshio Okamoto.

At least 37 records · Page 2Linked to original sources

Linear-Time Recognition of Double-Threshold Graphs

A graph $G = (V,E)$ is a double-threshold graph if there exist a vertex-weight function $w \colon V \to \mathbb{R}$ and two real numbers $\mathtt{lb}, \mathtt{ub} \in \mathbb{R}$ such that $uv \in E$ if and only if $\mathtt{lb} \le \mathtt{w}(u) + \mathtt{w}(v) \le \mathtt{ub}$. In the literature, those graphs are studied also as the pairwise compatibility graphs that have stars as their underlying trees. We give a new characterization of double-threshold graphs that relates them to bipartite permutation graphs. Using the new characterization, we present a linear-time algorithm for recognizing double-threshold graphs. Prior to our work, the fastest known algorithm by Xiao and Nagamochi [Algorithmica 2020] ran in $O(n^{3} m)$ time, where $n$ and $m$ are the numbers of vertices and edges, respectively.

cs.DS↗

Monotone edge flips to an orientation of maximum edge-connectivity à la Nash-Williams

We initiate the study of $k$-edge-connected orientations of undirected graphs through edge flips for $k \geq 2$. We prove that in every orientation of an undirected $2k$-edge-connected graph, there exists a sequence of edges such that flipping their directions one by one does not decrease the edge-connectivity, and the final orientation is $k$-edge-connected. This yields an ``edge-flip based'' new proof of Nash-Williams' theorem: an undirected graph $G$ has a $k$-edge-connected orientation if and only if $G$ is $2k$-edge-connected. As another consequence of the theorem, we prove that the edge-flip graph of $k$-edge-connected orientations of an undirected graph $G$ is connected if $G$ is $(2k+2)$-edge-connected. This has been known to be true only when $k=1$.

math.CO↗

Rectilinear Link Diameter and Radius in a Rectilinear Polygonal Domain

We study the computation of the diameter and radius under the rectilinear link distance within a rectilinear polygonal domain of $n$ vertices and $h$ holes. We introduce a \emph{graph of oriented distances} to encode the distance between pairs of points of the domain. This helps us transform the problem so that we can search through the candidates more efficiently. Our algorithm computes both the diameter and the radius in $\min \{\,O(n^ω), O(n^2 + nh \log h + χ^2)\,\}$ time, where $ω<2.373$ denotes the matrix multiplication exponent and $χ\in Ω(n)\cap O(n^2)$ is the number of edges of the graph of oriented distances. We also provide a faster algorithm for computing the diameter that runs in $O(n^2 \log n)$ time.

cs.CG↗

Variants of the Segment Number of a Graph

The \emph{segment number} of a planar graph is the smallest number of line segments whose union represents a crossing-free straight-line drawing of the given graph in the plane. The segment number is a measure for the visual complexity of a drawing; it has been studied extensively. In this paper, we study three variants of the segment number: for planar graphs, we consider crossing-free polyline drawings in 2D; for arbitrary graphs, we consider crossing-free straight-line drawings in 3D and straight-line drawings with crossings in 2D. We first construct an infinite family of planar graphs where the classical segment number is asymptotically twice as large as each of the new variants of the segment number. Then we establish the $\exists\mathbb{R}$-completeness (which implies the NP-hardness) of all variants. Finally, for cubic graphs, we prove lower and upper bounds on the new variants of the segment number, depending on the connectivity of the given graph.

cs.CG↗

Balanced Line Separators of Unit Disk Graphs

We prove a geometric version of the graph separator theorem for the unit disk intersection graph: for any set of $n$ unit disks in the plane there exists a line $\ell$ such that $\ell$ intersects at most $O(\sqrt{(m+n)\log{n}})$ disks and each of the halfplanes determined by $\ell$ contains at most $2n/3$ unit disks from the set, where $m$ is the number of intersecting pairs of disks. We also show that an axis-parallel line intersecting $O(\sqrt{m+n})$ disks exists, but each halfplane may contain up to $4n/5$ disks. We give an almost tight lower bound (up to sublogarithmic factors) for our approach, and also show that no line-separator of sublinear size in $n$ exists when we look at disks of arbitrary radii, even when $m=0$. Proofs are constructive and suggest simple algorithms that run in linear time. Experimental evaluation has also been conducted, which shows that for random instances our method outperforms the method by Fox and Pach (whose separator has size $O(\sqrt{m})$).

cs.CG↗

Shortest Reconfiguration of Perfect Matchings via Alternating Cycles

Motivated by adjacency in perfect matching polytopes, we study the shortest reconfiguration problem of perfect matchings via alternating cycles. Namely, we want to find a shortest sequence of perfect matchings which transforms one given perfect matching to another given perfect matching such that the symmetric difference of each pair of consecutive perfect matchings is a single cycle. The problem is equivalent to the combinatorial shortest path problem in perfect matching polytopes. We prove that the problem is NP-hard even when a given graph is planar or bipartite, but it can be solved in polynomial time when the graph is outerplanar.

cs.DS↗

Subgraph Isomorphism on Graph Classes that Exclude a Substructure

We study Subgraph Isomorphism on graph classes defined by a fixed forbidden graph. Although there are several ways for forbidding a graph, we observe that it is reasonable to focus on the minor relation since other well-known relations lead to either trivial or equivalent problems. When the forbidden minor is connected, we present a near dichotomy of the complexity of Subgraph Isomorphism with respect to the forbidden minor, where the only unsettled case is $P_{5}$, the path of five vertices. We then also consider the general case of possibly disconnected forbidden minors. We show fixed-parameter tractable cases and randomized XP-time solvable cases parameterized by the size of the forbidden minor $H$. We also show that by slightly generalizing the tractable cases, the problem becomes NP-complete. All unsettle cases are equivalent to $P_{5}$ or the disjoint union of two $P_{5}$'s. As a byproduct, we show that Subgraph Isomorphism is fixed-parameter tractable parameterized by vertex integrity. Using similar techniques, we also observe that Subgraph Isomorphism is fixed-parameter tractable parameterized by neighborhood diversity.

cs.DS↗

Orthogonal and Smooth Orthogonal Layouts of 1-Planar Graphs with Low Edge Complexity

While orthogonal drawings have a long history, smooth orthogonal drawings have been introduced only recently. So far, only planar drawings or drawings with an arbitrary number of crossings per edge have been studied. Recently, a lot of research effort in graph drawing has been directed towards the study of beyond-planar graphs such as 1-planar graphs, which admit a drawing where each edge is crossed at most once. In this paper, we consider graphs with a fixed embedding. For 1-planar graphs, we present algorithms that yield orthogonal drawings with optimal curve complexity and smooth orthogonal drawings with small curve complexity. For the subclass of outer-1-planar graphs, which can be drawn such that all vertices lie on the outer face, we achieve optimal curve complexity for both, orthogonal and smooth orthogonal drawings.

cs.DS↗

Computing the $L_1$ Geodesic Diameter and Center of a Polygonal Domain

For a polygonal domain with $h$ holes and a total of $n$ vertices, we present algorithms that compute the $L_1$ geodesic diameter in $O(n^2+h^4)$ time and the $L_1$ geodesic center in $O((n^4+n^2 h^4)α(n))$ time, respectively, where $α(\cdot)$ denotes the inverse Ackermann function. No algorithms were known for these problems before. For the Euclidean counterpart, the best algorithms compute the geodesic diameter in $O(n^{7.73})$ or $O(n^7(h+\log n))$ time, and compute the geodesic center in $O(n^{11}\log n)$ time. Therefore, our algorithms are significantly faster than the algorithms for the Euclidean problems. Our algorithms are based on several interesting observations on $L_1$ shortest paths in polygonal domains.

cs.CG↗

Approximation and Hardness for Token Swapping

Given a graph $G=(V,E)$ with $V=\{1,\ldots,n\}$, we place on every vertex a token $T_1,\ldots,T_n$. A swap is an exchange of tokens on adjacent vertices. We consider the algorithmic question of finding a shortest sequence of swaps such that token $T_i$ is on vertex $i$. We are able to achieve essentially matching upper and lower bounds, for exact algorithms and approximation algorithms. For exact algorithms, we rule out any $2^{o(n)}$ algorithm under the ETH. This is matched with a simple $2^{O(n\log n)}$ algorithm based on a breadth-first search in an auxiliary graph. We show one general $4$-approximation and show APX-hardness. Thus, there is a small constant $δ>1$ such that every polynomial time approximation algorithm has approximation factor at least $δ$. Our results also hold for a generalized version, where tokens and vertices are colored. In this generalized version each token must go to a vertex with the same color.

cs.CC↗

Computing the Geodesic Centers of a Polygonal Domain

We present an algorithm that computes the geodesic center of a given polygonal domain. The running time of our algorithm is $O(n^{12+ε})$ for any $ε>0$, where $n$ is the number of corners of the input polygonal domain. Prior to our work, only the very special case where a simple polygon is given as input has been intensively studied in the 1980s, and an $O(n \log n)$-time algorithm is known by Pollack et al. Our algorithm is the first one that can handle general polygonal domains having one or more polygonal holes.

cs.CG↗

Polynomial-time approximability of the k-Sink Location problem

A dynamic network ${\cal N} = (G,c,τ,S)$ where $G=(V,E)$ is a graph, integers $τ(e)$ and $c(e)$ represent, for each edge $e\in E$, the time required to traverse edge $e$ and its nonnegative capacity, and the set $S\subseteq V$ is a set of sources. In the $k$-{\sc Sink Location} problem, one is given as input a dynamic network ${\cal N}$ where every source $u\in S$ is given a nonnegative supply value $σ(u)$. The task is then to find a set of sinks $X = \{x_1,\ldots,x_k\}$ in $G$ that minimizes the routing time of all supply to $X$. Note that, in the case where $G$ is an undirected graph, the optimal position of the sinks in $X$ needs not be at vertices, and can be located along edges. Hoppe and Tardos showed that, given an instance of $k$-{\sc Sink Location} and a set of $k$ vertices $X\subseteq V$, one can find an optimal routing scheme of all the supply in $G$ to $X$ in polynomial time, in the case where graph $G$ is directed. Note that when $G$ is directed, this suffices to obtain polynomial-time solvability of the $k$-{\sc Sink Location} problem, since any optimal position will be located at vertices of $G$. However, the computational complexity of the $k$-{\sc Sink Location} problem on general undirected graphs is still open. In this paper, we show that the $k$-{\sc Sink Location} problem admits a fully polynomial-time approximation scheme (FPTAS) for every fixed $k$, and that the problem is $W[1]$-hard when parameterized by $k$.

cs.DS↗

Computing the $L_1$ Geodesic Diameter and Center of a Simple Polygon in Linear Time

In this paper, we show that the $L_1$ geodesic diameter and center of a simple polygon can be computed in linear time. For the purpose, we focus on revealing basic geometric properties of the $L_1$ geodesic balls, that is, the metric balls with respect to the $L_1$ geodesic distance. More specifically, in this paper we show that any family of $L_1$ geodesic balls in any simple polygon has Helly number two, and the $L_1$ geodesic center consists of midpoints of shortest paths between diametral pairs. These properties are crucial for our linear-time algorithms, and do not hold for the Euclidean case.

cs.CG↗

Extended Formulations for Sparsity Matroids

We show the existence of a polynomial-size extended formulation for the base polytope of a $(k,\ell)$-sparsity matroid. For an undirected graph $G=(V,E)$, the size of the formulation is $O(|V||E|)$ when $k \geq \ell$ and $O(|V|^2 |E|)$ when $k \leq \ell$. To this end, we employ the technique developed by Faenza et al. recently that uses a randomized communication protocol.

math.CO↗

On Problems as Hard as CNFSAT

The field of exact exponential time algorithms for NP-hard problems has thrived over the last decade. While exhaustive search remains asymptotically the fastest known algorithm for some basic problems, difficult and non-trivial exponential time algorithms have been found for a myriad of problems, including Graph Coloring, Hamiltonian Path, Dominating Set and 3-CNF-Sat. In some instances, improving these algorithms further seems to be out of reach. The CNF-Sat problem is the canonical example of a problem for which the trivial exhaustive search algorithm runs in time O(2^n), where n is the number of variables in the input formula. While there exist non-trivial algorithms for CNF-Sat that run in time o(2^n), no algorithm was able to improve the growth rate 2 to a smaller constant, and hence it is natural to conjecture that 2 is the optimal growth rate. The strong exponential time hypothesis (SETH) by Impagliazzo and Paturi [JCSS 2001] goes a little bit further and asserts that, for every epsilon<1, there is a (large) integer k such that that k-CNF-Sat cannot be computed in time 2^{epsilon n}. In this paper, we show that, for every epsilon < 1, the problems Hitting Set, Set Splitting, and NAE-Sat cannot be computed in time O(2^{epsilon n}) unless SETH fails. Here n is the number of elements or variables in the input. For these problems, we actually get an equivalence to SETH in a certain sense. We conjecture that SETH implies a similar statement for Set Cover, and prove that, under this assumption, the fastest known algorithms for Steinter Tree, Connected Vertex Cover, Set Partitioning, and the pseudo-polynomial time algorithm for Subset Sum cannot be significantly improved. Finally, we justify our assumption about the hardness of Set Cover by showing that the parity of the number of set covers cannot be computed in time O(2^{epsilon n}) for any epsilon<1 unless SETH fails.

cs.DS↗

Semantic Word Cloud Representations: Hardness and Approximation Algorithms

We study a geometric representation problem, where we are given a set $\cal R$ of axis-aligned rectangles with fixed dimensions and a graph with vertex set $\cal R$. The task is to place the rectangles without overlap such that two rectangles touch if and only if the graph contains an edge between them. We call this problem Contact Representation of Word Networks (CROWN). It formalizes the geometric problem behind drawing word clouds in which semantically related words are close to each other. Here, we represent words by rectangles and semantic relationships by edges. We show that CROWN is strongly NP-hard even restricted trees and weakly NP-hard if restricted stars. We consider the optimization problem Max-CROWN where each adjacency induces a certain profit and the task is to maximize the sum of the profits. For this problem, we present constant-factor approximations for several graph classes, namely stars, trees, planar graphs, and graphs of bounded degree. Finally, we evaluate the algorithms experimentally and show that our best method improves upon the best existing heuristic by 45%.

cs.CG↗

Exact and fixed-parameter algorithms for metro-line crossing minimization problems

A metro-line crossing minimization problem is to draw multiple lines on an underlying graph that models stations and rail tracks so that the number of crossings of lines becomes minimum. It has several variations by adding restrictions on how lines are drawn. Among those, there is one with a restriction that line terminals have to be drawn at a verge of a station, and it is known to be NP-hard even when underlying graphs are paths. This paper studies the problem in this setting, and propose new exact algorithms. We first show that a problem to decide if lines can be drawn without crossings is solved in polynomial time, and propose a fast exponential algorithm to solve a crossing minimization problem. We then propose a fixed-parameter algorithm with respect to the multiplicity of lines, which implies that the problem is FPT.

cs.DS↗

Efficient Enumeration of the Directed Binary Perfect Phylogenies from Incomplete Data

We study a character-based phylogeny reconstruction problem when an incomplete set of data is given. More specifically, we consider the situation under the directed perfect phylogeny assumption with binary characters in which for some species the states of some characters are missing. Our main object is to give an efficient algorithm to enumerate (or list) all perfect phylogenies that can be obtained when the missing entries are completed. While a simple branch-and-bound algorithm (B&B) shows a theoretically good performance, we propose another approach based on a zero-suppressed binary decision diagram (ZDD). Experimental results on randomly generated data exhibit that the ZDD approach outperforms B&B. We also prove that counting the number of phylogenetic trees consistent with a given data is #P-complete, thus providing an evidence that an efficient random sampling seems hard.

cs.DS↗